Cucsa.095980 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.095980
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa
Locationscaffold00919 : 1764717 .. 1765764 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCAGTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGTGATTCCTACTCCATTTTCTCCATTTTCTTTTtCTTCTGTTGTTTCTTGGAAGACGTGAGTAGAGAATCTGTGTTTCGGTGAAGTTTCTGTCGGTTTTCTGGTGGTTGAGAATCGATATGGAAAATGAATGATGAAAGATGGAAGGAAACTGTACTGGAAACTGTTTTAATATAACTTGCTTAAGAGAACAGAACGGAGTATGGTTTCTTGATAACGCTGTAGCGGTAAAATGCGTTTAGAAAAGAGTTGGTAATTAAGGTGTTTGGCGCTTATGGCTACAATGGCTAAGAAAAATGCAACGGCGATATGTTTAAATATCTCGATTCTTTAGTTTATGCAGCTTTTCTCTGCTTTAATTTGTAGGTGTGGAGATCATGTGAAAATAACTAAATATTTGATTTGAAGCTACTTGTTCTTTATATTGCGGGAATATGGTTACAGTGTCAACTACAAGTTAAACTGATTTCTGATTCTTTGGCTATTCAGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTAGTACTGACTATTTACGAGACTTGTGGCTAATTTTACACTGGAGATTTTGTTTTTGTTCCTTTTAGGAGCTTTGAGATGCTATTGGGTTTTCTATGAACGTCGTTTTGTTTATTTTCACCACATTCAACATTGCTGAATGTACATGTTCTTAGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAG

mRNA sequence

ATGCCAACCAGTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAG

Coding sequence (CDS)

ATGCCAACCAGTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAG

Protein sequence

MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQ
Homology
[Close]
BLAST of Cucsa.095980 vs. Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-06
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 60  VLKLDG----IRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG    + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIKGYGIKDGDQ 132
           EKL +D+  ++ YGI++ D+
Sbjct: 96  EKLTEDRKKLRDYGIRNRDE 113

[Close]
BLAST of Cucsa.095980 vs. Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-06
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 60  VLKLDG----IRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG    + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIKGYGIKDGDQ 132
           EKL +D+  ++ YGI++ D+
Sbjct: 96  EKLTEDRKKLRDYGIRNRDE 113

[Close]
BLAST of Cucsa.095980 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-06
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 1 

Query: 58  LFVLKLDG----IRVSRNSTVADLKRAIEKVFDS--PGGSEHYKITWSLIWGHFCLCYEG 117
           L V+KLDG    + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKTCIKGYGIKDGDQ 132
           EKL+DD   ++  GI++  Q
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQ 133

[Close]
BLAST of Cucsa.095980 vs. Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.6e-06
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 60  VLKLDG----IRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG    + V +++TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKTCIKGYGIKDGDQ 132
           EKL +D+  ++ YGI++ D+
Sbjct: 105 EKLTEDRKKLRDYGIRNRDE 122

[Close]
BLAST of Cucsa.095980 vs. TrEMBL
Match: A0A0A0KTJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.0e-70
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 1   MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLD----GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLD    GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKTCIKGYGIKDGDQ 132
           DKTCIKGYGIKDGDQ
Sbjct: 121 DKTCIKGYGIKDGDQ 135

[Close]
BLAST of Cucsa.095980 vs. TrEMBL
Match: W9REE9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-22
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1 

Query: 23  IDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDG----IRVSRNSTVADLK 82
           I+ RC AP TL+     D +SR  Y+ LP+  H+ L VLKLDG    ++V +++TVA+LK
Sbjct: 22  IERRCLAPLTLN-----DDVSR--YQKLPQLQHLKLSVLKLDGSVFEVQVVKSATVAELK 81

Query: 83  RAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQ 132
            AIE+ F S       KI+WSL+WGHFCLCYEG+KLI+DK+ I+ YGIK+GDQ
Sbjct: 82  SAIEEFFSSLPKEGQDKISWSLVWGHFCLCYEGQKLINDKSNIRNYGIKEGDQ 127

[Close]
BLAST of Cucsa.095980 vs. TrEMBL
Match: A0A061G7L5_THECC (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma cacao GN=TCM_027215 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.9e-21
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 1 

Query: 18  RFTRFIDYRCFAPPTLDFDP-------DSDALSRRP--YRLLPRQDHIDLFVLKLDG--- 77
           R    +D R  AP  L+F+        D+D +  R   YR LP+Q +  L VLKLDG   
Sbjct: 17  RVFNLLDRRRLAP--LNFNSRGGGDGDDNDVIVARKLLYRKLPQQRNFKLSVLKLDGSLF 76

Query: 78  -IRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 132
            + V RN+TVA+LK AIE++F +  G  H  I+WS +WGHFCL YEG+KL+++K CI+ +
Sbjct: 77  DVNVGRNATVAELKVAIEELFATLPGDTHGSISWSHVWGHFCLSYEGQKLVNNKACIRNF 136

[Close]
BLAST of Cucsa.095980 vs. TrEMBL
Match: B9RV86_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 1 

Query: 23  IDYRC-FAPPTLDFDPDSDALS--------RRPYRLLPRQDHIDLFVLKLDG----IRVS 82
           I+ RC  +P +L  D D DA++        R  Y  LP+Q  + L VLKLDG    + + 
Sbjct: 34  IERRCGLSPLSLKVDED-DAVNGNGGLVVRRYSYLKLPQQ-LLKLTVLKLDGSSFDVNIG 93

Query: 83  RNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDG 132
           RN+TVA+LK+A+E++F S     H KI+WSL+WGHFCL YE +KLI+DK CI+ +GIKDG
Sbjct: 94  RNATVAELKQAVEEIFSSSPEEGHDKISWSLVWGHFCLSYENQKLINDKVCIRNFGIKDG 153

[Close]
BLAST of Cucsa.095980 vs. TrEMBL
Match: A0A0B0MCU7_GOSAR (U11/U12 small nuclear ribonucleoprotein 25 kDa OS=Gossypium arboreum GN=F383_18090 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1 

Query: 5   SPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRP--YRLLPRQDHIDLFVLK 64
           S RS   ++ NL    R    +     +   D + DAL  R   YR LP Q  ++L VLK
Sbjct: 10  STRSYNLRVLNLRERGRLCSLKFNRVRSGGGDDEDDALVERQLLYRKLPDQHLLNLSVLK 69

Query: 65  LDG----IRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDK 124
           LDG    + + RN+TVA+LK AIE++F    G     I+W+ +WGHFCL YEG+KL+++K
Sbjct: 70  LDGSLFDVNIGRNATVAELKVAIEELFTEMAGETQGCISWAHVWGHFCLAYEGQKLVNNK 129

Query: 125 TCIKGYGIKDGDQ 132
            CIK +GIKDGDQ
Sbjct: 130 ACIKNFGIKDGDQ 142

[Close]
BLAST of Cucsa.095980 vs. TAIR10
Match: AT1G80060.1 (AT1G80060.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-18
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 44  RRPYRLLPRQDHIDLFVLKLDG----IRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWS 103
           R  Y  LP Q  I L V+KL+G    + V+++ +VA+LKRA+E+VF       H  I+WS
Sbjct: 41  RSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWS 100

Query: 104 LIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQ 132
            +WGHFCLCY  ++L++DKT I+  G+ DGDQ
Sbjct: 101 HVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQ 132

[Close]
BLAST of Cucsa.095980 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 47  YRLLPRQDHIDLFVLKLDG----IRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIW 106
           Y  LP +  I L VLKLDG    + V  ++TV DLK AIE  F         KI+WS +W
Sbjct: 11  YDKLPNEP-IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLIDDKTCIKGYGIKDGDQ 132
           GHFCLC+ G+KLI D  CI  YG+KDGD+
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDE 98

[Close]
BLAST of Cucsa.095980 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 1 

Query: 40  DALSRRP---YRLLPRQDHIDLFVLKLDG----IRVSRNSTVADLKRAIEKVFDSPGGSE 99
           D L RR    Y  +P ++ I L VLKLDG    I+V + +TV +LK A+E  F     S 
Sbjct: 20  DGLPRRRSFNYNQMP-EEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISG 79

Query: 100 HYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQ 132
             KI+W  +WG FCL YE ++LI++   +  +GIKDGDQ
Sbjct: 80  PGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQ 117

[Close]
BLAST of Cucsa.095980 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 28/80 (35.00%), Postives = 43/80 (53.75%), Query Frame = 1 

Query: 58  LFVLKLDG----IRVSRNSTVADLKRAIEKVFDS--PGGSEHYKITWSLIWGHFCLCYEG 117
           L V+KLDG    + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKTCIKGYGIKDGDQ 132
           EKL+DD   ++  GI++  Q
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQ 133

[Close]
BLAST of Cucsa.095980 vs. NCBI nr
Match: gi|449469242|ref|XP_004152330.1| (PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 4.3e-70
Identity = 130/135 (96.30%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 1   MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLD----GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLD    GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKTCIKGYGIKDGDQ 132
           DKTCIKGYGIKDGDQ
Sbjct: 121 DKTCIKGYGIKDGDQ 135

[Close]
BLAST of Cucsa.095980 vs. NCBI nr
Match: gi|659108389|ref|XP_008454172.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 122/135 (90.37%), Postives = 126/135 (93.33%), Query Frame = 1 

Query: 1   MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLD----GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLD    G+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQ 132
           DK CI+GY IKDGDQ
Sbjct: 121 DKACIRGYSIKDGDQ 135

[Close]
BLAST of Cucsa.095980 vs. NCBI nr
Match: gi|659108391|ref|XP_008454174.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 122/135 (90.37%), Postives = 126/135 (93.33%), Query Frame = 1 

Query: 1   MPTSSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLD----GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLD    G+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQ 132
           DK CI+GY IKDGDQ
Sbjct: 121 DKACIRGYSIKDGDQ 135

[Close]
BLAST of Cucsa.095980 vs. NCBI nr
Match: gi|703101520|ref|XP_010097209.1| (hypothetical protein L484_025757 [Morus notabilis])

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1 

Query: 23  IDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDG----IRVSRNSTVADLK 82
           I+ RC AP TL+     D +SR  Y+ LP+  H+ L VLKLDG    ++V +++TVA+LK
Sbjct: 22  IERRCLAPLTLN-----DDVSR--YQKLPQLQHLKLSVLKLDGSVFEVQVVKSATVAELK 81

Query: 83  RAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQ 132
            AIE+ F S       KI+WSL+WGHFCLCYEG+KLI+DK+ I+ YGIK+GDQ
Sbjct: 82  SAIEEFFSSLPKEGQDKISWSLVWGHFCLCYEGQKLINDKSNIRNYGIKEGDQ 127

[Close]
BLAST of Cucsa.095980 vs. NCBI nr
Match: gi|1009112930|ref|XP_015870817.1| (PREDICTED: uncharacterized protein LOC107407983 [Ziziphus jujuba])

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 1 

Query: 3   TSSPRSDRTKIANLWRFTRFIDYRCFAPPTL-DFDPDSDALSRRPYRLLPRQDHIDLFVL 62
           +S+ RS  TK   +      I+ R  AP TL D   D +  +   Y+ LP+   + L VL
Sbjct: 15  SSTSRSRGTKNLRV-----LIERRFLAPLTLNDNVGDGNVRNYSSYQKLPQLHLLKLSVL 74

Query: 63  KLDG----IRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDD 122
           KLDG    + V+RN+T+++LK+AIE+VF S    E + I WSL+WGHFCLCYEG KLI+D
Sbjct: 75  KLDGSAFEVLVARNATISELKQAIEEVFTSVSKEEGHGIAWSLVWGHFCLCYEGHKLIND 134

Query: 123 KTCIKGYGIKDGDQ 132
           K+ I+ YGIK+GDQ
Sbjct: 135 KSYIRNYGIKEGDQ 143

The following BLAST results are available for this feature:
BLAST of Cucsa.095980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SNR25_BOVIN2.0e-0637.50U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 ... [more]
SNR25_MOUSE2.0e-0637.50U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp2... [more]
U1125_ARATH5.8e-0635.00U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana G... [more]
SNR25_HUMAN7.6e-0636.25U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP2... [more]
BLAST of Cucsa.095980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTJ1_CUCSA3.0e-7096.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1[more]
W9REE9_9ROSA3.1e-2253.10Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1[more]
A0A061G7L5_THECC9.9e-2147.24U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma ca... [more]
B9RV86_RICCO1.3e-2049.18Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1[more]
A0A0B0MCU7_GOSAR1.7e-2044.36U11/U12 small nuclear ribonucleoprotein 25 kDa OS=Gossypium arboreum GN=F383_180... [more]
BLAST of Cucsa.095980 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80060.12.4e-1846.74 Ubiquitin-like superfamily protein[more]
AT5G25340.11.3e-1650.56 Ubiquitin-like superfamily protein[more]
AT4G32270.12.3e-1343.43 Ubiquitin-like superfamily protein[more]
AT3G07860.13.3e-0735.00 Ubiquitin-like superfamily protein[more]
BLAST of Cucsa.095980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469242|ref|XP_004152330.1|4.3e-7096.30PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus][more]
gi|659108389|ref|XP_008454172.1|1.9e-6590.37PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo][more]
gi|659108391|ref|XP_008454174.1|1.9e-6590.37PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo][more]
gi|703101520|ref|XP_010097209.1|4.4e-2253.10hypothetical protein L484_025757 [Morus notabilis][more]
gi|1009112930|ref|XP_015870817.1|2.2e-2147.01PREDICTED: uncharacterized protein LOC107407983 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.095980.1Cucsa.095980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 53..131
score: 7.1
NoneNo IPR availablePANTHERPTHR14942FAMILY NOT NAMEDcoord: 47..131
score: 4.4
NoneNo IPR availablePANTHERPTHR14942:SF2SUBFAMILY NOT NAMEDcoord: 47..131
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.095980Cla012750Watermelon (97103) v1cgywmB119
Cucsa.095980Csa4G006470Cucumber (Chinese Long) v2cgycuB102
Cucsa.095980ClCG07G012170Watermelon (Charleston Gray)cgywcgB117
Cucsa.095980CSPI04G02030Wild cucumber (PI 183967)cgycpiB103
Cucsa.095980CmaCh01G001540Cucurbita maxima (Rimu)cgycmaB0200
Cucsa.095980CmoCh01G001610Cucurbita moschata (Rifu)cgycmoB0193
Cucsa.095980Lsi07G004120Bottle gourd (USVL1VR-Ls)cgylsiB113
Cucsa.095980Cp4.1LG02g14950Cucurbita pepo (Zucchini)cgycpeB0195
Cucsa.095980MELO3C032858.2Melon (DHL92) v3.6.1cgymedB109
Cucsa.095980CsaV3_4G001990Cucumber (Chinese Long) v3cgycucB102
Cucsa.095980Cla97C07G138910Watermelon (97103) v2cgywmbB110
Cucsa.095980Bhi01G002812Wax gourdcgywgoB130
Cucsa.095980Carg04221Silver-seed gourdcarcgyB0236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.095980Cucurbita pepo (Zucchini)cgycpeB0193
Cucsa.095980Cucurbita pepo (Zucchini)cgycpeB0197
Cucsa.095980Bottle gourd (USVL1VR-Ls)cgylsiB109
Cucsa.095980Bottle gourd (USVL1VR-Ls)cgylsiB116
Cucsa.095980Melon (DHL92) v3.6.1cgymedB107
Cucsa.095980Melon (DHL92) v3.6.1cgymedB108
Cucsa.095980Silver-seed gourdcarcgyB0141
Cucsa.095980Silver-seed gourdcarcgyB0235
Cucsa.095980Cucumber (Chinese Long) v3cgycucB101
Cucsa.095980Cucumber (Chinese Long) v3cgycucB107
Cucsa.095980Watermelon (97103) v2cgywmbB114
Cucsa.095980Watermelon (97103) v2cgywmbB116
Cucsa.095980Cucumber (Gy14) v1cgycgyB034
Cucsa.095980Cucumber (Gy14) v1cgycgyB032
Cucsa.095980Cucurbita maxima (Rimu)cgycmaB0193
Cucsa.095980Cucurbita maxima (Rimu)cgycmaB0201
Cucsa.095980Cucurbita moschata (Rifu)cgycmoB0186
Cucsa.095980Cucurbita moschata (Rifu)cgycmoB0194
Cucsa.095980Wild cucumber (PI 183967)cgycpiB101
Cucsa.095980Wild cucumber (PI 183967)cgycpiB105
Cucsa.095980Cucumber (Chinese Long) v2cgycuB100
Cucsa.095980Melon (DHL92) v3.5.1cgymeB109
Cucsa.095980Melon (DHL92) v3.5.1cgymeB110
Cucsa.095980Melon (DHL92) v3.5.1cgymeB111
Cucsa.095980Watermelon (Charleston Gray)cgywcgB111
Cucsa.095980Watermelon (Charleston Gray)cgywcgB121
Cucsa.095980Watermelon (97103) v1cgywmB114
Cucsa.095980Watermelon (97103) v1cgywmB116