Cp4.1LG02g14950 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG02g14950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
LocationCp4.1LG02 : 13694170 .. 13696906 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGGAGAAGTGCGCGAGTAGGAGGATATAAGACTTTGCGAGTACCGGCACTCGCGCGTGGAAATTTCTGGATTTAAAAGTAAAATTGTTAGCGCGAGTCCATATGTAAAAGGAAAAACCTCCTCCATTGTGTAACGGTCCTCTCCTCTCTATTTGAAAGCTCAGAACCAACCAACAAACAAACTTCCCCGAAATCCCTCCATTTTTCTTCCCTCGTCTTTTCCGATTTCAAATTCTCGATCTCACTCGAACCCTAGCTGCTTCAGAGCCCTAGGATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTCCTCAAGCTCGACGGCTCTGTATTTGGTGATTCCTTTGCCATTTCTGTCCTCTTCTTTCATTCTTTCTTTTTTTACTCTGTTTCTTGCAAGAAACCAGAACTATATCATGTATGAACTTCGCTTTTGCTTCGAGATGAACTATCGTTTGCTATTTAGGTGGTCGAGATGAAACTTGAAAGCGGCATGGAAACGGAAAGTGCTTAAAGATAACCTGCTTAAGAATTAAGAGAATAGAATCGATTACTTTTATGAGAACACTGTAGTGGAAAGTGTTTGAAAAGAGTGACTAATTAAAGTGTAATGGCTTATCGCGAATATGACTAAGATAAATGCGATATCAAGAAAAGTAACTCTCCTTATTCCTTTACATTATTCCTCTTTTTTCCCCTGCTTTATAGCTGTGGAGAACGTGTACAGTAAAAATAACCAAATATTTGAAGCTACTCGTTCTTTGTATTGCTACAATTACAGTATTATTAACTATAATTTGAATGGATTTCGTATGGTTTGGCTATCCAGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTAGTATTGACCATCTTATGAGACTTGTGACTAATTTTACCACCTTGATTTTGTTTTTGTTCTTTTGGGAGGTTTGTAATTTTATTTGAGTTTTGCATGAATGCATGTGCTCGTAGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGGTGTGACAATGTAGTGATGTGTCTCTTGCTTGTTTATTGAGTTGAATACTGCTGCTCTGTAGCTTTTAATGTTTTGCCCTCGTATATTATGCAGCTTCAGTTTGTTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTGTAAGTTGTTCTTTCTTATGGATACAGTAGCACATGCGTCTGTTTCTTACAAAACGGTGTTGTTTGGTGTTGTTCTTTTTAGTGGCTGCACTTACACATGGCACATGCATGCGTATGCCAATCCACGGGCTGATACCATTCTAATTTCTGAATGCAATTGCTCAATTTGATGGTTTATTTACTCAGACATGAATTAGGGATTAGTTAGTTAATGAAATCTTATGTTTTATAAAATTCTCAATTAATATTATCAACTAATTAGAATGGTTCGTTATAAGACCCTGATATTTGATTCTTCAAATAGAGTATTATTGTATACTCTTTCCTAATGTATGGCACAGCTCCATCTTTTAAGTTTGTAATCTAATCTTTTGCCTCAAAATATTGAAAAAAAAAAAAAAAAAATCACATTGAGGGGAGTCAACAATTTGTTCAGAATCCTTTCCAAATAAAATTTCCATTGTTTCTATTTCACATTTTCAGTAATGCAGTTGTAATCTCTGTCGAATTTCTCATTTCTACAAATAAATAGCATCCATACTCATCATTAGACTAGCCTTTTATCATCTAGGACTAAACATCCTTAATTTCTATAGCGTAGTTCAATAGAAAACGAATTTCTCAATATTTGCTTCTTACTCTGTTCTACTAGATATTTAACTTTTACTTCCCATAAAGTCTGCCAGCAGAACCAAAATCTATTGAAGGGAATCAAGTAGCTGGTCAAGGCGATCCCGTGAATTATGAAGTTCACGAGGACGGTTCCAACCAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATATCTTTAGAGGACGGCTATTATATTCCAAGATATGGGGGTTTTTTAGAAGTGCATCAGAAGGCAGGAATAGGCCTTCTGCCGGTTTCTGCATTACTTGACTTAGCAAATGGACATGGAATAACACAAGCTGCAAGGTTAGCCTAGCCATTTGAAGTTATGAAACAATTTGTGTGCTATTCTCTGTCTTTTGTTTGCCATTAACTAAGTGGCCACCGGAACTAGGATGTGCAGAGATTGAAACTTTAGCATTTGATTTATGAACATGACAAGTTAGATTCTAGAATAAAGAAGTGAGAGAGAAAAGATTGACTCTGACATGTATATATCAGACTGGATTTGTTGTTGGATGTTTCTGTATAAAGTTCTTTTACTTCCCTTCCAACTCTCCTCTTTCAATCTCCTGTGGTTCCACTGAACTTAGAAGCAATTTTCTTAAGTTAATGTGGAGAGGAAGT

mRNA sequence

GCGGGAGAAGTGCGCGAGTAGGAGGATATAAGACTTTGCGAGTACCGGCACTCGCGCGTGGAAATTTCTGGATTTAAAAGTAAAATTGTTAGCGCGAGTCCATATGTAAAAGGAAAAACCTCCTCCATTGTGTAACGGTCCTCTCCTCTCTATTTGAAAGCTCAGAACCAACCAACAAACAAACTTCCCCGAAATCCCTCCATTTTTCTTCCCTCGTCTTTTCCGATTTCAAATTCTCGATCTCACTCGAACCCTAGCTGCTTCAGAGCCCTAGGATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTCCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGCTTCAGTTTGTTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTTCTGCCAGCAGAACCAAAATCTATTGAAGGGAATCAAGTAGCTGGTCAAGGCGATCCCGTGAATTATGAAGTTCACGAGGACGGTTCCAACCAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATATCTTTAGAGGACGGCTATTATATTCCAAGATATGGGGGTTTTTTAGAAGTGCATCAGAAGGCAGGAATAGGCCTTCTGCCGGTTTCTGCATTACTTGACTTAGCAAATGGACATGGAATAACACAAGCTGCAAGGTTAGCCTAGCCATTTGAAGTTATGAAACAATTTGTGTGCTATTCTCTGTCTTTTGTTTGCCATTAACTAAGTGGCCACCGGAACTAGGATGTGCAGAGATTGAAACTTTAGCATTTGATTTATGAACATGACAAGTTAGATTCTAGAATAAAGAAGTGAGAGAGAAAAGATTGACTCTGACATGTATATATCAGACTGGATTTGTTGTTGGATGTTTCTGTATAAAGTTCTTTTACTTCCCTTCCAACTCTCCTCTTTCAATCTCCTGTGGTTCCACTGAACTTAGAAGCAATTTTCTTAAGTTAATGTGGAGAGGAAGT

Coding sequence (CDS)

ATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTCCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGCTTCAGTTTGTTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTTCTGCCAGCAGAACCAAAATCTATTGAAGGGAATCAAGTAGCTGGTCAAGGCGATCCCGTGAATTATGAAGTTCACGAGGACGGTTCCAACCAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATATCTTTAGAGGACGGCTATTATATTCCAAGATATGGGGGTTTTTTAGAAGTGCATCAGAAGGCAGGAATAGGCCTTCTGCCGGTTTCTGCATTACTTGA

Protein sequence

MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYEVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCIT
BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-10
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1

Query: 58  LFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASE--HCKITWSLVWGHFCLCYEG 117
           L V+KLDGS   V V  + T+ DLK  I++  +    +   H  I+W  VW +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLF 166
           EKL+DD A ++ VGI++  Q+ F+ ++      MK+ R   +   K  LF
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGRGRHSKRKKHRLF 157

BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1

Query: 60  VLKLDGSVFGVRVARNGTVADLKQAIEEVF----DSPGASEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V +N TV DLK+AI+       +  G  +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKAYIRVVGIKDGDQLQFVRHM 143
           EKL +D+  +R  GI++ D++ F++ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1

Query: 60  VLKLDGSVFGVRVARNGTVADLKQAIEEVF----DSPGASEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V +N TV DLK+AI+       +  G  +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKAYIRVVGIKDGDQLQFVRHM 143
           EKL +D+  +R  GI++ D++ F++ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1

Query: 60  VLKLDGSVFGVRVARNGTVADLKQAIEEVF----DSPGASEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V ++ TV DLK+AI+       +  G  +H  I+WS VW  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKAYIRVVGIKDGDQLQFVRHM 143
           EKL +D+  +R  GI++ D++ F++ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: A0A0A0KTJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.9e-95
Identity = 169/234 (72.22%), Postives = 193/234 (82.48%), Query Frame = 1

Query: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD D D DAL RRPYRLLPR + IDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68

Query: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128
           G+RV+RN TVADLK+AIE+VFDSPG SEH KITWSL+WGHFCLCYEGEKLIDDK  I+  
Sbjct: 69  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 128

Query: 129 GIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYE 188
           GIKDGDQLQF+RHMSINCL MK+DRKNQ VPCK +LFL  E K++E NQ  GQ D  +Y+
Sbjct: 129 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADGQDDFKDYQ 188

Query: 189 VHEDGSNQEE---IPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCI 240
           VH D SN+EE   +  AGFQLAN+F+GR+LYS+IWGF +SASEGRNR S+ F I
Sbjct: 189 VHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAFRI 242

BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: B9RV86_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-44
Identity = 114/258 (44.19%), Postives = 152/258 (58.91%), Query Frame = 1

Query: 1   MRRIGGPRERSKIGNLWRFNR---------FIDNRC-LAPLTLDGDGDVDAL-------- 60
           MRRI G  +R    +    N           I+ RC L+PL+L  D D DA+        
Sbjct: 3   MRRIFGREQRKGNSDANHDNNNNNNTILKVIIERRCGLSPLSLKVDED-DAVNGNGGLVV 62

Query: 61  RRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITW 120
           RR  Y  LP+ +L+ L VLKLDGS F V + RN TVA+LKQA+EE+F S     H KI+W
Sbjct: 63  RRYSYLKLPQ-QLLKLTVLKLDGSSFDVNIGRNATVAELKQAVEEIFSSSPEEGHDKISW 122

Query: 121 SLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKT 180
           SLVWGHFCL YE +KLI+DK  IR  GIKDGDQLQF+RHMSIN    ++     AV  + 
Sbjct: 123 SLVWGHFCLSYENQKLINDKVCIRNFGIKDGDQLQFIRHMSINYSNSRQSTSQNAV--RK 182

Query: 181 VLFLPAEPKSIEGNQV-----AGQGDPVNYEVHEDGSNQEEIPMAGFQLANIFRGRLLYS 235
            L  P++  ++E  Q          +  +Y +++   +QEEIP++ F+LA+  RG L YS
Sbjct: 183 SLGPPSKDANVEKEQKTTEDHTSMNENQDYNLYDYCEDQEEIPISEFKLAHFLRGWLSYS 242

BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: A0A061G7L5_THECC (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma cacao GN=TCM_027215 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.9e-44
Identity = 105/233 (45.06%), Postives = 139/233 (59.66%), Query Frame = 1

Query: 11  SKIGNLWRFNRFIDNRCLAPLTLD----GDGD---VDALRRRPYRLLPRLELIDLFVLKL 70
           S+ G+L  FN  +D R LAPL  +    GDGD   V   R+  YR LP+     L VLKL
Sbjct: 11  SRGGSLRVFN-LLDRRRLAPLNFNSRGGGDGDDNDVIVARKLLYRKLPQQRNFKLSVLKL 70

Query: 71  DGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKA 130
           DGS+F V V RN TVA+LK AIEE+F +     H  I+WS VWGHFCL YEG+KL+++KA
Sbjct: 71  DGSLFDVNVGRNATVAELKVAIEELFATLPGDTHGSISWSHVWGHFCLSYEGQKLVNNKA 130

Query: 131 YIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGD 190
            IR  GIKDGDQLQF+RHMS+N LP++R  K+  VPCK +    +  +  + N V     
Sbjct: 131 CIRNFGIKDGDQLQFIRHMSVNQLPLRRRLKHHNVPCKWLSSGSSYHQEKQHNSVNFNNK 190

Query: 191 PVNYE---VHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRP 234
             N E     +    +EEIP+   +L ++ RG L  +++WG  R   EG + P
Sbjct: 191 DENQEDSSTSDHYEEEEEIPLPEVKLGHLLRGWLSCTRLWGASRKGPEGPSNP 242

BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: W9REE9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.6e-43
Identity = 108/233 (46.35%), Postives = 136/233 (58.37%), Query Frame = 1

Query: 3   RIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLK 62
           RI G  E     N       I+ RCLAPLTL+ D          Y+ LP+L+ + L VLK
Sbjct: 2   RINGVLEARHNSNGSNLKVLIERRCLAPLTLNDDVS-------RYQKLPQLQHLKLSVLK 61

Query: 63  LDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDK 122
           LDGSVF V+V ++ TVA+LK AIEE F S       KI+WSLVWGHFCLCYEG+KLI+DK
Sbjct: 62  LDGSVFEVQVVKSATVAELKSAIEEFFSSLPKEGQDKISWSLVWGHFCLCYEGQKLINDK 121

Query: 123 AYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPC-KTVLFLPAEPKSIEGNQVAGQ 182
           + IR  GIK+GDQLQF+RHMSIN  P K+  K +   C K +L L +   + E ++  G 
Sbjct: 122 SNIRNYGIKEGDQLQFIRHMSINYSPFKKRPKKENTSCKKDLLMLSSGSNACEESEQNGM 181

Query: 183 GDPVNYEVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPS 235
              V  E  E    +EE   A F++A+  RG L YSK+ GF R       R S
Sbjct: 182 N--VGKESKEI-DKEEENGAAQFKMAHFLRGLLSYSKLRGFSRGGGSSDCRTS 224

BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: A0A059BYH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03880 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.1e-41
Identity = 104/225 (46.22%), Postives = 129/225 (57.33%), Query Frame = 1

Query: 27  CLAPLTLDG---DGDVD---------ALRRRPYRLLPRLELIDLFVLKLDGSVFGVRVAR 86
           CL P  +DG   D D D          +R   YR LPR  L++L +LKLDGSVF V V R
Sbjct: 17  CLGPRKIDGEFPDDDEDEGGGRDAVGCVRSYTYRRLPR-HLLELSILKLDGSVFDVHVER 76

Query: 87  NGTVADLKQAIEEVFDS-PGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDG 146
           N TVA LKQAIE+VF S P      KI+WS VWGHFCL ++GEKL++D+AY++   I DG
Sbjct: 77  NATVAALKQAIEDVFSSSPMDGNLGKISWSHVWGHFCLSFDGEKLLNDRAYLKSFKINDG 136

Query: 147 DQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLP------AEPKSIEGNQVAGQGDPVNY 206
           DQL FVRH+SI+  P++R  KN  V  +    LP       E ++      A   D +NY
Sbjct: 137 DQLCFVRHLSIDYSPVERQPKNHNVSWRQHQMLPPYSNDCKEAEAANSEDDADDWDYINY 196

Query: 207 EVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNR 233
             HED     EIPM  F+LA+  RG L YSK+W   R  SE   R
Sbjct: 197 NNHED----HEIPMPEFRLAHFLRGWLSYSKLWRVKRKGSEAPRR 236

BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT1G80060.1 (AT1G80060.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37
Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 1

Query: 23  IDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLK 82
           ID R L+   L+  G +   RR  Y  LP    I L V+KL+GS+F V VA++ +VA+LK
Sbjct: 21  IDPRFLSSFALNDGGSISG-RRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 83  QAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHM 142
           +A+E+VF       H  I+WS VWGHFCLCY  ++L++DK  IR +G+ DGDQL FVRH+
Sbjct: 81  RAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHL 140

Query: 143 SINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYEVHED--GSNQEEIP 202
           SI+  PM  ++++++  CK  L L      +   Q+  Q      +V E      Q+E+P
Sbjct: 141 SIDHSPM--NKRSKSPSCKRYLELDVS-SIVNEIQIQNQNQNGVDDVAEKCYPGAQDELP 200

Query: 203 MAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPS 235
            A  +L N+ +G L Y+  WG  R   E R+ PS
Sbjct: 201 AAESRLVNLIKGWLPYAGRWGVSRKGPECRSGPS 230

BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-25
Identity = 74/195 (37.95%), Postives = 103/195 (52.82%), Query Frame = 1

Query: 28  LAPLTLDGDGDVDALRRRP---YRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQA 87
           L+PL L     +D L RR    Y  +P  E I L VLKLDGS FG++V +  TV +LK A
Sbjct: 13  LSPLRL-----IDGLPRRRSFNYNQMPE-EPIKLTVLKLDGSSFGIQVLKTATVGELKMA 72

Query: 88  IEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSI 147
           +E  F     S   KI+W  VWG FCL YE ++LI++  Y+   GIKDGDQL+F+RH+S 
Sbjct: 73  VEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISN 132

Query: 148 NCLPMKRDRKN--QAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYEVHEDGSNQEEIPMA 207
            C+ M + +    +    K +      P++ + N +         EV EDG   + IP +
Sbjct: 133 YCMLMVKHKSKTPRVSSFKQLKLFSTTPETRKKNVIR--------EVEEDGV-VDSIPRS 192

Query: 208 GFQ-LANIFRGRLLY 217
               LA +  G L Y
Sbjct: 193 QPSFLATVLGGLLSY 192

BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 7.3e-21
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 1

Query: 47  YRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVW 106
           Y  LP  E I L VLKLDGS F V V  + TV DLK AIE  F         KI+WS VW
Sbjct: 11  YDKLPN-EPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMK 151
           GHFCLC+ G+KLI D   I   G+KDGD+++F  H+S N +  K
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSK 113

BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1

Query: 58  LFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASE--HCKITWSLVWGHFCLCYEG 117
           L V+KLDGS   V V  + T+ DLK  I++  +    +   H  I+W  VW +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLF 166
           EKL+DD A ++ VGI++  Q+ F+ ++      MK+ R   +   K  LF
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGRGRHSKRKKHRLF 157

BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|449469242|ref|XP_004152330.1| (PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 4.2e-95
Identity = 169/234 (72.22%), Postives = 193/234 (82.48%), Query Frame = 1

Query: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD D D DAL RRPYRLLPR + IDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68

Query: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128
           G+RV+RN TVADLK+AIE+VFDSPG SEH KITWSL+WGHFCLCYEGEKLIDDK  I+  
Sbjct: 69  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 128

Query: 129 GIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYE 188
           GIKDGDQLQF+RHMSINCL MK+DRKNQ VPCK +LFL  E K++E NQ  GQ D  +Y+
Sbjct: 129 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADGQDDFKDYQ 188

Query: 189 VHEDGSNQEE---IPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCI 240
           VH D SN+EE   +  AGFQLAN+F+GR+LYS+IWGF +SASEGRNR S+ F I
Sbjct: 189 VHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAFRI 242

BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|659108389|ref|XP_008454172.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94
Identity = 168/234 (71.79%), Postives = 191/234 (81.62%), Query Frame = 1

Query: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD + D DAL RRPYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68

Query: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128
           GVRV+RN TVADLK+AIEEVFDSPG SEH KITWSL+WGHFCLCYEGEKL DDKA IR  
Sbjct: 69  GVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128

Query: 129 GIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYE 188
            IKDGDQLQF+RHMSINCL MK+DRKNQ VPCKT+LF   E K++E NQ  G+ D  +Y+
Sbjct: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVEENQADGRDDIKDYQ 188

Query: 189 VHEDGSNQEEI---PMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCI 240
           VH D SNQEE+     A FQL+N F+GR+LYS++WGF +SASEGRNR S+ F I
Sbjct: 189 VHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAFRI 242

BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|659108391|ref|XP_008454174.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 8.0e-70
Identity = 126/158 (79.75%), Postives = 137/158 (86.71%), Query Frame = 1

Query: 9   ERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC AP TLD + D DAL RRPYRLLPR +LIDLFVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGSVF 68

Query: 69  GVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVV 128
           GVRV+RN TVADLK+AIEEVFDSPG SEH KITWSL+WGHFCLCYEGEKL DDKA IR  
Sbjct: 69  GVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIRGY 128

Query: 129 GIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFL 167
            IKDGDQLQF+RHMSINCL MK+DRKNQ VPCKT+L +
Sbjct: 129 SIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILLI 166

BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|255553225|ref|XP_002517655.1| (PREDICTED: uncharacterized protein LOC8282356 [Ricinus communis])

HSP 1 Score: 187.2 bits (474), Expect = 3.4e-44
Identity = 114/258 (44.19%), Postives = 152/258 (58.91%), Query Frame = 1

Query: 1   MRRIGGPRERSKIGNLWRFNR---------FIDNRC-LAPLTLDGDGDVDAL-------- 60
           MRRI G  +R    +    N           I+ RC L+PL+L  D D DA+        
Sbjct: 3   MRRIFGREQRKGNSDANHDNNNNNNTILKVIIERRCGLSPLSLKVDED-DAVNGNGGLVV 62

Query: 61  RRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITW 120
           RR  Y  LP+ +L+ L VLKLDGS F V + RN TVA+LKQA+EE+F S     H KI+W
Sbjct: 63  RRYSYLKLPQ-QLLKLTVLKLDGSSFDVNIGRNATVAELKQAVEEIFSSSPEEGHDKISW 122

Query: 121 SLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKT 180
           SLVWGHFCL YE +KLI+DK  IR  GIKDGDQLQF+RHMSIN    ++     AV  + 
Sbjct: 123 SLVWGHFCLSYENQKLINDKVCIRNFGIKDGDQLQFIRHMSINYSNSRQSTSQNAV--RK 182

Query: 181 VLFLPAEPKSIEGNQV-----AGQGDPVNYEVHEDGSNQEEIPMAGFQLANIFRGRLLYS 235
            L  P++  ++E  Q          +  +Y +++   +QEEIP++ F+LA+  RG L YS
Sbjct: 183 SLGPPSKDANVEKEQKTTEDHTSMNENQDYNLYDYCEDQEEIPISEFKLAHFLRGWLSYS 242

BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|590615459|ref|XP_007023228.1| (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative [Theobroma cacao])

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 105/233 (45.06%), Postives = 139/233 (59.66%), Query Frame = 1

Query: 11  SKIGNLWRFNRFIDNRCLAPLTLD----GDGD---VDALRRRPYRLLPRLELIDLFVLKL 70
           S+ G+L  FN  +D R LAPL  +    GDGD   V   R+  YR LP+     L VLKL
Sbjct: 11  SRGGSLRVFN-LLDRRRLAPLNFNSRGGGDGDDNDVIVARKLLYRKLPQQRNFKLSVLKL 70

Query: 71  DGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKA 130
           DGS+F V V RN TVA+LK AIEE+F +     H  I+WS VWGHFCL YEG+KL+++KA
Sbjct: 71  DGSLFDVNVGRNATVAELKVAIEELFATLPGDTHGSISWSHVWGHFCLSYEGQKLVNNKA 130

Query: 131 YIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGD 190
            IR  GIKDGDQLQF+RHMS+N LP++R  K+  VPCK +    +  +  + N V     
Sbjct: 131 CIRNFGIKDGDQLQFIRHMSVNQLPLRRRLKHHNVPCKWLSSGSSYHQEKQHNSVNFNNK 190

Query: 191 PVNYE---VHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRP 234
             N E     +    +EEIP+   +L ++ RG L  +++WG  R   EG + P
Sbjct: 191 DENQEDSSTSDHYEEEEEIPLPEVKLGHLLRGWLSCTRLWGASRKGPEGPSNP 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
U1125_ARATH4.2e-1035.45U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana G... [more]
SNR25_BOVIN2.7e-0937.93U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 ... [more]
SNR25_MOUSE2.7e-0937.93U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp2... [more]
SNR25_HUMAN1.0e-0836.78U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP2... [more]
Match NameE-valueIdentityDescription
A0A0A0KTJ1_CUCSA2.9e-9572.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1[more]
B9RV86_RICCO2.3e-4444.19Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1[more]
A0A061G7L5_THECC8.9e-4445.06U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma ca... [more]
W9REE9_9ROSA2.6e-4346.35Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1[more]
A0A059BYH1_EUCGR7.1e-4146.22Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G80060.14.2e-3740.19 Ubiquitin-like superfamily protein[more]
AT4G32270.16.3e-2537.95 Ubiquitin-like superfamily protein[more]
AT5G25340.17.3e-2150.96 Ubiquitin-like superfamily protein[more]
AT3G07860.12.3e-1135.45 Ubiquitin-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449469242|ref|XP_004152330.1|4.2e-9572.22PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus][more]
gi|659108389|ref|XP_008454172.1|2.7e-9471.79PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo][more]
gi|659108391|ref|XP_008454174.1|8.0e-7079.75PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo][more]
gi|255553225|ref|XP_002517655.1|3.4e-4444.19PREDICTED: uncharacterized protein LOC8282356 [Ricinus communis][more]
gi|590615459|ref|XP_007023228.1|1.3e-4345.06U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative [Theobroma caca... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g14950.1Cp4.1LG02g14950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 56..145
score: 4.0
NoneNo IPR availablePANTHERPTHR14942FAMILY NOT NAMEDcoord: 47..234
score: 4.5
NoneNo IPR availablePANTHERPTHR14942:SF2SUBFAMILY NOT NAMEDcoord: 47..234
score: 4.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g14950Cp4.1LG04g09350Cucurbita pepo (Zucchini)cpecpeB454
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g14950Cucumber (Gy14) v2cgybcpeB549
Cp4.1LG02g14950Cucumber (Gy14) v2cgybcpeB947
Cp4.1LG02g14950Melon (DHL92) v3.6.1cpemedB593
Cp4.1LG02g14950Melon (DHL92) v3.6.1cpemedB608
Cp4.1LG02g14950Melon (DHL92) v3.6.1cpemedB633
Cp4.1LG02g14950Silver-seed gourdcarcpeB0175
Cp4.1LG02g14950Silver-seed gourdcarcpeB0813
Cp4.1LG02g14950Silver-seed gourdcarcpeB1429
Cp4.1LG02g14950Cucumber (Chinese Long) v3cpecucB0677
Cp4.1LG02g14950Cucumber (Chinese Long) v3cpecucB0712
Cp4.1LG02g14950Cucumber (Chinese Long) v3cpecucB0728
Cp4.1LG02g14950Wax gourdcpewgoB0676
Cp4.1LG02g14950Wax gourdcpewgoB0682
Cp4.1LG02g14950Wax gourdcpewgoB0721
Cp4.1LG02g14950Cucurbita pepo (Zucchini)cpecpeB356
Cp4.1LG02g14950Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG02g14950Cucurbita pepo (Zucchini)cpecpeB332
Cp4.1LG02g14950Cucurbita pepo (Zucchini)cpecpeB451
Cp4.1LG02g14950Cucumber (Gy14) v1cgycpeB0193
Cp4.1LG02g14950Cucumber (Gy14) v1cgycpeB0439
Cp4.1LG02g14950Cucurbita maxima (Rimu)cmacpeB194
Cp4.1LG02g14950Cucurbita maxima (Rimu)cmacpeB282
Cp4.1LG02g14950Cucurbita maxima (Rimu)cmacpeB399
Cp4.1LG02g14950Cucurbita maxima (Rimu)cmacpeB923
Cp4.1LG02g14950Cucurbita moschata (Rifu)cmocpeB244
Cp4.1LG02g14950Cucurbita moschata (Rifu)cmocpeB361
Cp4.1LG02g14950Wild cucumber (PI 183967)cpecpiB544
Cp4.1LG02g14950Wild cucumber (PI 183967)cpecpiB576
Cp4.1LG02g14950Cucumber (Chinese Long) v2cpecuB541
Cp4.1LG02g14950Cucumber (Chinese Long) v2cpecuB575
Cp4.1LG02g14950Cucumber (Chinese Long) v2cpecuB588
Cp4.1LG02g14950Bottle gourd (USVL1VR-Ls)cpelsiB442
Cp4.1LG02g14950Bottle gourd (USVL1VR-Ls)cpelsiB472
Cp4.1LG02g14950Watermelon (Charleston Gray)cpewcgB483
Cp4.1LG02g14950Watermelon (Charleston Gray)cpewcgB524
Cp4.1LG02g14950Watermelon (Charleston Gray)cpewcgB535
Cp4.1LG02g14950Watermelon (97103) v1cpewmB536
Cp4.1LG02g14950Watermelon (97103) v1cpewmB545
Cp4.1LG02g14950Watermelon (97103) v1cpewmB557
Cp4.1LG02g14950Melon (DHL92) v3.5.1cpemeB509
Cp4.1LG02g14950Melon (DHL92) v3.5.1cpemeB533