Cp4.1LG02g14950 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCGGGAGAAGTGCGCGAGTAGGAGGATATAAGACTTTGCGAGTACCGGCACTCGCGCGTGGAAATTTCTGGATTTAAAAGTAAAATTGTTAGCGCGAGTCCATATGTAAAAGGAAAAACCTCCTCCATTGTGTAACGGTCCTCTCCTCTCTATTTGAAAGCTCAGAACCAACCAACAAACAAACTTCCCCGAAATCCCTCCATTTTTCTTCCCTCGTCTTTTCCGATTTCAAATTCTCGATCTCACTCGAACCCTAGCTGCTTCAGAGCCCTAGGATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTCCTCAAGCTCGACGGCTCTGTATTTGGTGATTCCTTTGCCATTTCTGTCCTCTTCTTTCATTCTTTCTTTTTTTACTCTGTTTCTTGCAAGAAACCAGAACTATATCATGTATGAACTTCGCTTTTGCTTCGAGATGAACTATCGTTTGCTATTTAGGTGGTCGAGATGAAACTTGAAAGCGGCATGGAAACGGAAAGTGCTTAAAGATAACCTGCTTAAGAATTAAGAGAATAGAATCGATTACTTTTATGAGAACACTGTAGTGGAAAGTGTTTGAAAAGAGTGACTAATTAAAGTGTAATGGCTTATCGCGAATATGACTAAGATAAATGCGATATCAAGAAAAGTAACTCTCCTTATTCCTTTACATTATTCCTCTTTTTTCCCCTGCTTTATAGCTGTGGAGAACGTGTACAGTAAAAATAACCAAATATTTGAAGCTACTCGTTCTTTGTATTGCTACAATTACAGTATTATTAACTATAATTTGAATGGATTTCGTATGGTTTGGCTATCCAGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTAGTATTGACCATCTTATGAGACTTGTGACTAATTTTACCACCTTGATTTTGTTTTTGTTCTTTTGGGAGGTTTGTAATTTTATTTGAGTTTTGCATGAATGCATGTGCTCGTAGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGGTGTGACAATGTAGTGATGTGTCTCTTGCTTGTTTATTGAGTTGAATACTGCTGCTCTGTAGCTTTTAATGTTTTGCCCTCGTATATTATGCAGCTTCAGTTTGTTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTGTAAGTTGTTCTTTCTTATGGATACAGTAGCACATGCGTCTGTTTCTTACAAAACGGTGTTGTTTGGTGTTGTTCTTTTTAGTGGCTGCACTTACACATGGCACATGCATGCGTATGCCAATCCACGGGCTGATACCATTCTAATTTCTGAATGCAATTGCTCAATTTGATGGTTTATTTACTCAGACATGAATTAGGGATTAGTTAGTTAATGAAATCTTATGTTTTATAAAATTCTCAATTAATATTATCAACTAATTAGAATGGTTCGTTATAAGACCCTGATATTTGATTCTTCAAATAGAGTATTATTGTATACTCTTTCCTAATGTATGGCACAGCTCCATCTTTTAAGTTTGTAATCTAATCTTTTGCCTCAAAATATTGAAAAAAAAAAAAAAAAAATCACATTGAGGGGAGTCAACAATTTGTTCAGAATCCTTTCCAAATAAAATTTCCATTGTTTCTATTTCACATTTTCAGTAATGCAGTTGTAATCTCTGTCGAATTTCTCATTTCTACAAATAAATAGCATCCATACTCATCATTAGACTAGCCTTTTATCATCTAGGACTAAACATCCTTAATTTCTATAGCGTAGTTCAATAGAAAACGAATTTCTCAATATTTGCTTCTTACTCTGTTCTACTAGATATTTAACTTTTACTTCCCATAAAGTCTGCCAGCAGAACCAAAATCTATTGAAGGGAATCAAGTAGCTGGTCAAGGCGATCCCGTGAATTATGAAGTTCACGAGGACGGTTCCAACCAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATATCTTTAGAGGACGGCTATTATATTCCAAGATATGGGGGTTTTTTAGAAGTGCATCAGAAGGCAGGAATAGGCCTTCTGCCGGTTTCTGCATTACTTGACTTAGCAAATGGACATGGAATAACACAAGCTGCAAGGTTAGCCTAGCCATTTGAAGTTATGAAACAATTTGTGTGCTATTCTCTGTCTTTTGTTTGCCATTAACTAAGTGGCCACCGGAACTAGGATGTGCAGAGATTGAAACTTTAGCATTTGATTTATGAACATGACAAGTTAGATTCTAGAATAAAGAAGTGAGAGAGAAAAGATTGACTCTGACATGTATATATCAGACTGGATTTGTTGTTGGATGTTTCTGTATAAAGTTCTTTTACTTCCCTTCCAACTCTCCTCTTTCAATCTCCTGTGGTTCCACTGAACTTAGAAGCAATTTTCTTAAGTTAATGTGGAGAGGAAGT GCGGGAGAAGTGCGCGAGTAGGAGGATATAAGACTTTGCGAGTACCGGCACTCGCGCGTGGAAATTTCTGGATTTAAAAGTAAAATTGTTAGCGCGAGTCCATATGTAAAAGGAAAAACCTCCTCCATTGTGTAACGGTCCTCTCCTCTCTATTTGAAAGCTCAGAACCAACCAACAAACAAACTTCCCCGAAATCCCTCCATTTTTCTTCCCTCGTCTTTTCCGATTTCAAATTCTCGATCTCACTCGAACCCTAGCTGCTTCAGAGCCCTAGGATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTCCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGCTTCAGTTTGTTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTTCTGCCAGCAGAACCAAAATCTATTGAAGGGAATCAAGTAGCTGGTCAAGGCGATCCCGTGAATTATGAAGTTCACGAGGACGGTTCCAACCAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATATCTTTAGAGGACGGCTATTATATTCCAAGATATGGGGGTTTTTTAGAAGTGCATCAGAAGGCAGGAATAGGCCTTCTGCCGGTTTCTGCATTACTTGACTTAGCAAATGGACATGGAATAACACAAGCTGCAAGGTTAGCCTAGCCATTTGAAGTTATGAAACAATTTGTGTGCTATTCTCTGTCTTTTGTTTGCCATTAACTAAGTGGCCACCGGAACTAGGATGTGCAGAGATTGAAACTTTAGCATTTGATTTATGAACATGACAAGTTAGATTCTAGAATAAAGAAGTGAGAGAGAAAAGATTGACTCTGACATGTATATATCAGACTGGATTTGTTGTTGGATGTTTCTGTATAAAGTTCTTTTACTTCCCTTCCAACTCTCCTCTTTCAATCTCCTGTGGTTCCACTGAACTTAGAAGCAATTTTCTTAAGTTAATGTGGAGAGGAAGT ATGCGAAGGATTGGCGGTCCCCGAGAGAGGAGTAAGATCGGTAACTTATGGCGTTTCAACCGCTTCATTGATAACCGGTGCTTGGCTCCGCTTACGCTCGACGGAGACGGTGATGTTGACGCTCTCAGACGGCGGCCTTATCGGTTGCTTCCTCGGCTGGAGCTCATTGATCTCTTTGTCCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTAGCGCGCAATGGTACAGTAGCAGATCTCAAACAAGCGATAGAGGAAGTTTTTGATTCACCCGGGGCGAGCGAACACTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATACATTAGAGTTGTAGGCATCAAAGATGGTGATCAGCTTCAGTTTGTTAGGCATATGTCTATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAGCCGTTCCTTGCAAAACAGTGTTGTTTCTGCCAGCAGAACCAAAATCTATTGAAGGGAATCAAGTAGCTGGTCAAGGCGATCCCGTGAATTATGAAGTTCACGAGGACGGTTCCAACCAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATATCTTTAGAGGACGGCTATTATATTCCAAGATATGGGGGTTTTTTAGAAGTGCATCAGAAGGCAGGAATAGGCCTTCTGCCGGTTTCTGCATTACTTGA MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFVLKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAGQGDPVNYEVHEDGSNQEEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCIT
BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.2e-10 Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2) HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09 Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.7e-09 Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: A0A0A0KTJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 2.9e-95 Identity = 169/234 (72.22%), Postives = 193/234 (82.48%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: B9RV86_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.3e-44 Identity = 114/258 (44.19%), Postives = 152/258 (58.91%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: A0A061G7L5_THECC (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma cacao GN=TCM_027215 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 8.9e-44 Identity = 105/233 (45.06%), Postives = 139/233 (59.66%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: W9REE9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 2.6e-43 Identity = 108/233 (46.35%), Postives = 136/233 (58.37%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TrEMBL
Match: A0A059BYH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03880 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 7.1e-41 Identity = 104/225 (46.22%), Postives = 129/225 (57.33%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT1G80060.1 (AT1G80060.1 Ubiquitin-like superfamily protein) HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37 Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein) HSP 1 Score: 111.7 bits (278), Expect = 6.3e-25 Identity = 74/195 (37.95%), Postives = 103/195 (52.82%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein) HSP 1 Score: 98.2 bits (243), Expect = 7.3e-21 Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein) HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11 Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|449469242|ref|XP_004152330.1| (PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus]) HSP 1 Score: 356.3 bits (913), Expect = 4.2e-95 Identity = 169/234 (72.22%), Postives = 193/234 (82.48%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|659108389|ref|XP_008454172.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo]) HSP 1 Score: 353.6 bits (906), Expect = 2.7e-94 Identity = 168/234 (71.79%), Postives = 191/234 (81.62%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|659108391|ref|XP_008454174.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo]) HSP 1 Score: 272.3 bits (695), Expect = 8.0e-70 Identity = 126/158 (79.75%), Postives = 137/158 (86.71%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|255553225|ref|XP_002517655.1| (PREDICTED: uncharacterized protein LOC8282356 [Ricinus communis]) HSP 1 Score: 187.2 bits (474), Expect = 3.4e-44 Identity = 114/258 (44.19%), Postives = 152/258 (58.91%), Query Frame = 1
BLAST of Cp4.1LG02g14950 vs. NCBI nr
Match: gi|590615459|ref|XP_007023228.1| (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative [Theobroma cacao]) HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43 Identity = 105/233 (45.06%), Postives = 139/233 (59.66%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |