CsaV3_4G001990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G001990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
Location	chr4 : 1164718 .. 1167666 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAAGTAAATAAGCCTCCTTCCATTGCAATTTGTAACGGTCCTCTCCTTTCCATTTCAAAGCTCAGAACCAAACCACCAAAACAAACTTCCCCTAAATCCCTCCATTTCTCTTCCTTCCCATTCCGAATCCCAAACCCTAAAACTCCTTCATCACACCTCTACAATGCCAACCAGTTCTCCTCGCCCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGTGATTCCTACTCCATTTTCTCCATTTTCTTTTTCTTCTGTTGTTTCTTGGAAGACGTGAGTAGAGAATCTGTGTTTCGGTGAAGTTTCTGTCGGTTTTCTGGTGGTTGAGAATCGATATGGAAAATGAATGATGAAAGATGGAAGGAAACTGTACTGGAAACTGTTTTAATATAACTTGCTTAAGAGAACAGAACGGAGTATGGTTTCTTGATAACGCTGTAGCGGTAAAATGCGTTTAGAAAATAGTTGGTAATTAAGGTGTTTGGCGCTTATGGCTACAATGGCTAAGAAAAATGCAACGGCGATATGTTTAAATATCTCGATTCTTTAGTTTATGCAGTTTTTCTCTGCTTTAATTTGTAGGTGTGGAGATCATGTGAAAATAACTAAATATTTGATTTGAAGCTACTTGTTCTTTATATTGCGGGAATATGGTTACAGTGTCAACTACAAGTTAAACTGATTTTTGATTCTTTGGCTATCCAGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTAGTACTGACTATTTACGAGACTTATGGCTAATTTTACACTGGAGATTTTGTTTTTGTTCCTTTTAGGAGCTTTGAGATGCTATTGGGTTTTCTATGAACGTCGTTTTGTTTATTTTCACCACATTCAACATTGCTGAATGTACATGTTCTTAGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGGTGTGAGAATATTGTGATGTGTCTCTTGCTTGTTCGTTGAGTTAAACGTTAGGTGTTCTCTAGCTTTTAATGTTTTCCCCTGTTGTGATAATGCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTGTGAGTTTCTAAGTTGTTCTTTCTTATAGCTGATGTTGCACATGTGTCCGTTTCTTGCAAAACAGTGTCATTTCTTATCTGTTCACTTTATAGGCTGCACTAGCACATGCATAAACATGCCAATGCACGGGCACATACCGTTATCTTTTCTGAACAAAATTGCTTGATTTGATGGCTTGTAAGAAGCAAAAGATGAATACAAGAGATGGATACAGCACGACACTGATATTGAGACACTTTCTTTTCTAAAAATTTAGGATATGATATGGCAATAACACCTTTATTAAAATATTTATCATTTTTATATAAATTTTTTTTAGTAAATGAGATTTATATGCTTAAAAAGTTGATGTATTTTACGCTCAAAATTTATTAAAATTGTCACATGTGTTTTCTTAATCTAACTCAACAAGTGATTTATGCATGTACAATTCATTTGTTGTACAGATACACTAGCCAAACTAGCCAAACTAAAGTGTCCATAGATTTTAGATGGCTTGTTTTTTAGTCCCATTGTACAGTCTACAAACTATGCATACTTTCCCAATATTTTATTTTTTCTGCAATGAACAGTTGATGGTTTATTCTTGAACTGTTCTATTAGACAGTAAACTGATATTTCCCATAAAAGTTTATCGCCAGAATCAAAAGCTGTTGAAGAGAATCAAGCAGATGGTCAAGACGATTTCAAGGATTATCAAGTTCACAGGGACGATTCGAACCGAGAGGAGGTTGCTTCTGTGGCGAGAGCTGGATTTCAGCTGGCAAATTTGTTCAAAGGACGGGTATTGTATTCCAGGATATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCTTCCTCTGCTTTTCGCATTGCTTGAGATTGGAAATGGGACATGGAATCACACAAGCTGCAAGGTAATGAACTTACTTAGCTAGGAAGTGTAGGGATTGAAACTTAAGCATTTGATTTATGAACAAGGCAAGTTAGATTGGAGTAGGCCTAGGAGGAAAGGAAATAGAGGGAAGATTTCTGAAATGTAAATATTAGCCTCCATTTGTTGTTGGATAGTTTTGTAAAAAGTTCTTTTGCTTCACTTCTCTTTTCATCTTTGGAGTTAGCAGTGAAGTTAGGTCATGTTTACAATAATAGTATGAAAATTGGCTTCATTTTATTACTTTTTTTTTCGTTGTTTCATGTGTTATGTAATTGTGTTATGACGTGTCCTTAAAAATTACATGGAAGTGGTTGCGGGAATTCAGGTTGATGGTGGAAGGTGGTATTCGAAGTTGTCAATGGAGGTGATTGCTAGAACACGGAGTTGGCCATGCGAATGTAGTCGTTGGAGTTGGTCACCAAAGTGTGACACTAGTAGTCGTCAACAAGGCTAATAGTTGGAGTTTTTGATTGTGGTGAGTTGGAGAATGAACTGGGATTAAGTTGGGTGAGTTGATGGACAAAACGTTAAGTTGATAATTTTTAACGACCGAATCCAACTTATTTTGATGAGCTAAATACCCTTGACCAAAACTAAATTTAAATAATAAAAAATGTAAATTTG

mRNA sequence

ATGCCAACCAGTTCTCCTCGCCCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTAATCAAAAGCTGTTGA

Coding sequence (CDS)

ATGCCAACCAGTTCTCCTCGCCCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTAATCAAAAGCTGTTGA

Protein sequence

MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLLIKSC

Homology

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BLAST of CsaV3_4G001990 vs. NCBI nr
Match: XP_004152330.1 (PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus] >XP_011652998.1 PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus] >KGN52940.1 hypothetical protein Csa_4G006470 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 9.9e-95
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLLI 167
           DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAML +
Sbjct: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFL 166

[Close]

BLAST of CsaV3_4G001990 vs. NCBI nr
Match: XP_008454174.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 340.9 bits (873), Expect = 2.5e-90
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSP  DRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLLIKSC 170
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +LLIKSC
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILLIKSC 169

[Close]

BLAST of CsaV3_4G001990 vs. NCBI nr
Match: XP_008454172.1 (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 2.0e-87
Identity = 152/164 (92.68%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSP  DRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAML 165
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +L
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 164

[Close]

BLAST of CsaV3_4G001990 vs. NCBI nr
Match: XP_022153473.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica charantia])

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 122/157 (77.71%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC APPTLD D D DALSR PYRLLPRQD IDLFVLKLDGSVF
Sbjct: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67

Query: 69  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 128
           G+RV+RN TVA+LKRAIE+VF SPGG EH KITWSL+WGHFCLCYEG+ LIDDK CI+ +
Sbjct: 68  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 127

Query: 129 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLL 166
           GIKDGDQLQFIRHMSI+CL +K+DRK+QTV C+ +LL
Sbjct: 128 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLL 164

[Close]

BLAST of CsaV3_4G001990 vs. NCBI nr
Match: XP_022153470.1 (uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153471.1 uncharacterized protein LOC111020973 isoform X1 [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 121/158 (76.58%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68
           +R+KI NLWRF RFID RC APPTLD D D DALSR PYRLLPRQD IDLFVLKLDGSVF
Sbjct: 8   ERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFVLKLDGSVF 67

Query: 69  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 128
           G+RV+RN TVA+LKRAIE+VF SPGG EH KITWSL+WGHFCLCYEG+ LIDDK CI+ +
Sbjct: 68  GVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLIDDKACIRVF 127

Query: 129 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLLI 167
           GIKDGDQLQFIRHMSI+CL +K+DRK+QTV C+ +L +
Sbjct: 128 GIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFL 165

[Close]

BLAST of CsaV3_4G001990 vs. TAIR10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-28
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 44  RRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWS 103
           R  Y  LP Q  I L V+KL+GS+F + V+++ +VA+LKRA+E+VF       H  I+WS
Sbjct: 41  RSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWS 100

Query: 104 LIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAM 163
            +WGHFCLCY  ++L++DKT I+  G+ DGDQL F+RH+SI+   M K  K+ +  CK  
Sbjct: 101 HVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLSIDHSPMNKRSKSPS--CKRY 159

Query: 164 L 165
           L
Sbjct: 161 L 159

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BLAST of CsaV3_4G001990 vs. TAIR10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-23
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 40  DALSRR---PYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSE 99
           D L RR    Y  +P ++ I L VLKLDGS FGI+V + +TV +LK A+E  F     S 
Sbjct: 20  DGLPRRRSFNYNQMP-EEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISG 79

Query: 100 HYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDR 154
             KI+W  +WG FCL YE ++LI++   +  +GIKDGDQL+FIRH+S  C+ M K +
Sbjct: 80  PGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHK 135

[Close]

BLAST of CsaV3_4G001990 vs. TAIR10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 47  YRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIW 106
           Y  LP +  I L VLKLDGS F + V  ++TV DLK AIE  F         KI+WS +W
Sbjct: 11  YDKLPNEP-IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCL-----SMKKDRKN 156
           GHFCLC+ G+KLI D  CI  YG+KDGD+++F  H+S N +     S K  +KN
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKN 123

[Close]

BLAST of CsaV3_4G001990 vs. TAIR10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 58  LFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFD--SPGGSEHYKITWSLIWGHFCLCYEG 117
           L V+KLDGS   + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDR 154
           EKL+DD   ++  GI++  Q+ F+ ++      MKK R
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGR 145

[Close]

BLAST of CsaV3_4G001990 vs. Swiss-Prot
Match: sp|Q3ZBQ4|SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-11
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 60  VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIKGYGIKDGDQLQFIRHM 143
           EKL +D+  ++ YGI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of CsaV3_4G001990 vs. Swiss-Prot
Match: sp|Q8VIK1|SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-11
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 60  VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIKGYGIKDGDQLQFIRHM 143
           EKL +D+  ++ YGI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of CsaV3_4G001990 vs. Swiss-Prot
Match: sp|Q9BV90|SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 60  VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  + V +++TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKTCIKGYGIKDGDQLQFIRHM 143
           EKL +D+  ++ YGI++ D++ FI+ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of CsaV3_4G001990 vs. Swiss-Prot
Match: sp|Q84WS8|U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-10
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 58  LFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFD--SPGGSEHYKITWSLIWGHFCLCYEG 117
           L V+KLDGS   + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDR 154
           EKL+DD   ++  GI++  Q+ F+ ++      MKK R
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGR 145

[Close]

BLAST of CsaV3_4G001990 vs. TrEMBL
Match: tr|A0A0A0KTJ1|A0A0A0KTJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 6.5e-95
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLLI 167
           DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAML +
Sbjct: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFL 166

[Close]

BLAST of CsaV3_4G001990 vs. TrEMBL
Match: tr|A0A1S3BYS1|A0A1S3BYS1_CUCME (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.7e-90
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSP  DRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLLIKSC 170
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +LLIKSC
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILLIKSC 169

[Close]

BLAST of CsaV3_4G001990 vs. TrEMBL
Match: tr|A0A1S3BY00|A0A1S3BY00_CUCME (uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.3e-87
Identity = 152/164 (92.68%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPTSSP  DRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAML 165
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +L
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 164

[Close]

BLAST of CsaV3_4G001990 vs. TrEMBL
Match: tr|W9REE9|W9REE9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025757 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.3e-36
Identity = 81/146 (55.48%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 23  IDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLK 82
           I+ RC AP TL     +D +SR  Y+ LP+  H+ L VLKLDGSVF ++V +++TVA+LK
Sbjct: 22  IERRCLAPLTL-----NDDVSR--YQKLPQLQHLKLSVLKLDGSVFEVQVVKSATVAELK 81

Query: 83  RAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHM 142
            AIE+ F S       KI+WSL+WGHFCLCYEG+KLI+DK+ I+ YGIK+GDQLQFIRHM
Sbjct: 82  SAIEEFFSSLPKEGQDKISWSLVWGHFCLCYEGQKLINDKSNIRNYGIKEGDQLQFIRHM 141

Query: 143 SINCLSMKKDRKNQTVPCKAMLLIKS 169
           SIN    KK  K +   CK  LL+ S
Sbjct: 142 SINYSPFKKRPKKENTSCKKDLLMLS 160

[Close]

BLAST of CsaV3_4G001990 vs. TrEMBL
Match: tr|A0A061G7L5|A0A061G7L5_THECC (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma cacao OX=3641 GN=TCM_027215 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 77/153 (50.33%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 18  RFTRFIDYRCFAPPTLDFD-------PDSDALSRRP--YRLLPRQDHIDLFVLKLDGSVF 77
           R    +D R  AP  L+F+        D+D +  R   YR LP+Q +  L VLKLDGS+F
Sbjct: 17  RVFNLLDRRRLAP--LNFNSRGGGDGDDNDVIVARKLLYRKLPQQRNFKLSVLKLDGSLF 76

Query: 78  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 137
            + V RN+TVA+LK AIE++F +  G  H  I+WS +WGHFCL YEG+KL+++K CI+ +
Sbjct: 77  DVNVGRNATVAELKVAIEELFATLPGDTHGSISWSHVWGHFCLSYEGQKLVNNKACIRNF 136

Query: 138 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK 162
           GIKDGDQLQFIRHMS+N L +++  K+  VPCK
Sbjct: 137 GIKDGDQLQFIRHMSVNQLPLRRRLKHHNVPCK 167

The following BLAST results are available for this feature:

BLAST of CsaV3_4G001990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152330.1	9.9e-95	98.80	PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus] >XP_011652998....	[more]
XP_008454174.1	2.5e-90	92.90	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Cu...	[more]
XP_008454172.1	2.0e-87	92.68	PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo]	[more]
XP_022153473.1	1.2e-68	77.71	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica cha...	[more]
XP_022153470.1	1.6e-68	76.58	uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153...	[more]

BLAST of CsaV3_4G001990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80060.1	5.7e-28	47.11	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	1.9e-23	47.01	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	3.2e-23	48.25	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	2.8e-11	34.69	Ubiquitin-like superfamily protein	[more]

BLAST of CsaV3_4G001990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3ZBQ4\|SNR25_BOVIN	3.5e-11	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
sp\|Q8VIK1\|SNR25_MOUSE	3.5e-11	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
sp\|Q9BV90\|SNR25_HUMAN	1.3e-10	36.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
sp\|Q84WS8\|U1125_ARATH	5.1e-10	34.69	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_4G001990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTJ1\|A0A0A0KTJ1_CUCSA	6.5e-95	98.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1	[more]
tr\|A0A1S3BYS1\|A0A1S3BYS1_CUCME	1.7e-90	92.90	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Cucumis mel...	[more]
tr\|A0A1S3BY00\|A0A1S3BY00_CUCME	1.3e-87	92.68	uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|W9REE9\|W9REE9_9ROSA	5.3e-36	55.48	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025757 PE=4 SV=1	[more]
tr\|A0A061G7L5\|A0A061G7L5_THECC	1.3e-34	50.33	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma ca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G001990.1	CsaV3_4G001990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 51..150 e-value: 1.0E-31 score: 110.7
None	No IPR available	PANTHER	PTHR14942	FAMILY NOT NAMED	coord: 46..160
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 52..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G001990	CSPI04G02030	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G001990	Cucsa.095980	Cucumber (Gy14) v1	cgycucB102
CsaV3_4G001990	CmaCh01G001540	Cucurbita maxima (Rimu)	cmacucB0569
CsaV3_4G001990	CmoCh01G001610	Cucurbita moschata (Rifu)	cmocucB0556
CsaV3_4G001990	Cp4.1LG02g14950	Cucurbita pepo (Zucchini)	cpecucB0705
CsaV3_4G001990	CsGy4G001960	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G001990	Carg04221	Silver-seed gourd	carcucB0229
CsaV3_4G001990	Cla012750	Watermelon (97103) v1	cucwmB316
CsaV3_4G001990	ClCG07G012170	Watermelon (Charleston Gray)	cucwcgB345
CsaV3_4G001990	MELO3C032858.2	Melon (DHL92) v3.6.1	cucmedB307
CsaV3_4G001990	Cla97C07G138910	Watermelon (97103) v2	cucwmbB331
CsaV3_4G001990	Bhi01G002812	Wax gourd	cucwgoB371

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G001990	Cucumber (Chinese Long) v3	cuccucB080
CsaV3_4G001990	Cucumber (Chinese Long) v3	cuccucB189
CsaV3_4G001990	Silver-seed gourd	carcucB0137
CsaV3_4G001990	Silver-seed gourd	carcucB0230
CsaV3_4G001990	Cucumber (Gy14) v2	cgybcucB340
CsaV3_4G001990	Cucumber (Gy14) v1	cgycucB129
CsaV3_4G001990	Cucumber (Gy14) v1	cgycucB254
CsaV3_4G001990	Cucurbita maxima (Rimu)	cmacucB0298
CsaV3_4G001990	Cucurbita maxima (Rimu)	cmacucB0557
CsaV3_4G001990	Cucurbita maxima (Rimu)	cmacucB0987
CsaV3_4G001990	Cucurbita moschata (Rifu)	cmocucB0201
CsaV3_4G001990	Cucurbita moschata (Rifu)	cmocucB0291
CsaV3_4G001990	Cucurbita moschata (Rifu)	cmocucB0544
CsaV3_4G001990	Cucurbita pepo (Zucchini)	cpecucB0712
CsaV3_4G001990	Cucurbita pepo (Zucchini)	cpecucB0767
CsaV3_4G001990	Cucurbita pepo (Zucchini)	cpecucB1065
CsaV3_4G001990	Wild cucumber (PI 183967)	cpicucB102
CsaV3_4G001990	Wild cucumber (PI 183967)	cpicucB406
CsaV3_4G001990	Bottle gourd (USVL1VR-Ls)	cuclsiB289
CsaV3_4G001990	Bottle gourd (USVL1VR-Ls)	cuclsiB331
CsaV3_4G001990	Bottle gourd (USVL1VR-Ls)	cuclsiB337
CsaV3_4G001990	Melon (DHL92) v3.5.1	cucmeB278
CsaV3_4G001990	Melon (DHL92) v3.5.1	cucmeB291
CsaV3_4G001990	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G001990	Melon (DHL92) v3.6.1	cucmedB271
CsaV3_4G001990	Melon (DHL92) v3.6.1	cucmedB283
CsaV3_4G001990	Watermelon (Charleston Gray)	cucwcgB275
CsaV3_4G001990	Watermelon (Charleston Gray)	cucwcgB351
CsaV3_4G001990	Watermelon (97103) v1	cucwmB311
CsaV3_4G001990	Watermelon (97103) v2	cucwmbB337
CsaV3_4G001990	Watermelon (97103) v2	cucwmbB340