CSPI04G02030 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G02030
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
Location	Chr4 : 1162147 .. 1164284 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACCACTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGTGATTCCTACTCCATTTTCTCCATTTTCTTTTTCTTCTGTTGTTTCTTGGAAGACGTGAGTAGAGAATCTGTGTTTCGGTGAAGTTTCTGTCGGTTTTCTGGTGGTTGAGAATCGATATGGAAAATGAATGATGAAAGATGGAAGGAAACTGTACTGGAAACTGTTTTAATATAACTTGCTTAAGAGAACAGAACGGAGTATGGTTTCTTGATAACGCTGTAGCGGTAAAATGCGTTTAGAAAAGAGTTGGTAATTAAGGTGTTTGGCGCTTATGGCTACAATGGCTAAGAAAAATGCAACGGCGATATGTTTAAATATCTCGATTCTTTAGTTTATGCAGTTTTTCTCTGCTTTAATTTGTAGGTGTGGAGATCATGTGAAAATAACTAAATATTTGATTTGAAGCTACTTGTTCTTTATATTGCGGGAATATGGTTACAGTGTCAACTACAAGTTAAACTGATTTTTGATTCTTTGGCTATCCAGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTAGTACTGACTATTTACGAGACTTATGGCTAATTTTACACTGGAGATTTTGTTTTTGTTCCTTTTAGGAGCTTTGAGATGCTATTGGGTTTTCTATGAACGTCGTTTTGTTTATTTTCACCACATTCAACATTGCTGAATGTACATGTTCTTAGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGGTGTGAGAATATTGTGATGTGTCTCTTGCTTGTTCGTTGAGTTAAACGTTAGGTGTTCTCTAGCTTTTAATGTTTTCCCCTGTTGTGATAATGCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTGTGAGTTTCTAAGTTGTTCTTTCTTATAGCTGATGTTGCACATGTGTCCGTTTCTTGCAAAACAGTGTCATTTCTTATCTGTTCTCTTTATAGGCTGCACTAGCACATGCATAAACATGCCAATGCACGGGCACATACCGTTATCTTTTCTGAACAAAATTGCTTGATTTGATGGCTTGTAAGAAGCAAAAGATGAATACAAGAGATGGATACAGCACGACACTGATATTGAGACACGTTCTTTTCTAAAAATTTAGGATATGATATGGCAATAACACCTTTATTAAAATATTTATCATTTTTATATAAATTTTTTTTTAGTAAATGAGATTTATATGCTTAAAAAGTTGATGTATTTTACGCTCAAAATTTATTAAAATTGTCACATGTGTTTTCTTAATCTAACTCAACAAGTGATTTATGCATGTACAATTCATTTGTTGTACAGATACACTAGCCAAACTAGCCAAACTAAAGTGTCCATAGATTTTAGATGGCTTGTTTTTTAGTCCCATTGTACAGTCTACAAACTATGCATACTTTCCCAATATTTTCTTTGTTCTGCAATGAACAGTTGATGGTTTATTCTTGAACTGTTCTATTAGACAGTAAACTGATATTTCCCATAAAAGTTTCTCGCCAGAATCAAAAGCTGTTGAAGAGAATCAAGCAGATGGTCAAGACGATTTCAAGGATTATCAAGTTCACAGGGACGATTCGAACCGAGAGGAGGTTGCTTCTGTGGCGAGAGCTGGATTTCAGCTGGCAAATTTGTTCAAAGGACGGGTATTGTATTCCAGGATATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCATCCTCTGCTTTTCGCATTGCTTGAGATTGGAAATGGACATGGAATCACACAAGCTGCAA

mRNA sequence

ATGCCAACCACTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTTTTCTCGCCAGAATCAAAAGCTGTTGAAGAGAATCAAGCAGATGGTCAAGACGATTTCAAGGATTATCAAGTTCACAGGGACGATTCGAACCGAGAGGAGGTTGCTTCTGTGGCGAGAGCTGGATTTCAGCTGGCAAATTTGTTCAAAGGACGGGTATTGTATTCCAGGATATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCATCCTCTGCTTTTCGCATTGCTTGA

Coding sequence (CDS)

ATGCCAACCACTTCTCCTCGCTCCGACCGGACCAAGATCGCTAACTTATGGCGTTTCACCCGCTTCATTGATTACCGGTGTTTTGCTCCGCCGACGCTCGACTTTGATCCTGACTCCGACGCTCTCAGTCGGAGGCCTTATCGCTTGCTTCCTCGTCAGGATCATATCGATCTTTTCGTCCTGAAGCTCGACGGTTCTGTTTTTGGCATTCGAGTATCGCGGAACAGTACAGTAGCAGATCTTAAACGAGCAATAGAGAAGGTTTTTGATTCCCCCGGGGGGAGTGAACACTACAAGATTACATGGTCACTTATCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGACATGCATTAAAGGTTATGGGATTAAGGATGGTGATCAGCTTCAGTTTATTAGGCACATGTCTATCAACTGTTTGTCGATGAAGAAAGACAGGAAGAACCAAACTGTTCCTTGCAAAGCAATGCTGTTTTTCTCGCCAGAATCAAAAGCTGTTGAAGAGAATCAAGCAGATGGTCAAGACGATTTCAAGGATTATCAAGTTCACAGGGACGATTCGAACCGAGAGGAGGTTGCTTCTGTGGCGAGAGCTGGATTTCAGCTGGCAAATTTGTTCAAAGGACGGGTATTGTATTCCAGGATATGGGGTTTCTGTAAGAGTGCATCAGAAGGCAGGAATAGGGCATCCTCTGCTTTTCGCATTGCTTGA

Homology

[Close]

BLAST of CSPI04G02030 vs. Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-11
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 60  VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIKGYGIKDGDQLQFIRHM 143
           EKL +D+  ++ YGI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of CSPI04G02030 vs. Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-11
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 60  VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  + V +N+TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKTCIKGYGIKDGDQLQFIRHM 143
           EKL +D+  ++ YGI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of CSPI04G02030 vs. Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-10
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1


Query: 58  LFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDS--PGGSEHYKITWSLIWGHFCLCYEG 117
           L V+KLDGS   + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFS 168
           EKL+DD   ++  GI++  Q+ F+ ++      MKK R   +   K  LF S
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGRGRHSKRKKHRLFRS 159

[Close]

BLAST of CSPI04G02030 vs. Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-10
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1


Query: 60  VLKLDGSVFGIRVSRNSTVADLKRAIEKVF----DSPGGSEHYKITWSLIWGHFCLCYEG 119
           V K+DG V  + V +++TV DLK+AI++      +  GG +H  I+WS +W  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKTCIKGYGIKDGDQLQFIRHM 143
           EKL +D+  ++ YGI++ D++ FI+ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of CSPI04G02030 vs. TrEMBL
Match: A0A0A0KTJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 5.7e-139
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 1


Query: 1   MPTTSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPT+SPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADG 180
           DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLF SPESKAVEENQADG
Sbjct: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADG 180

Query: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240
           QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF
Sbjct: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240

Query: 241 RIA 244
           RIA
Sbjct: 241 RIA 243

[Close]

BLAST of CSPI04G02030 vs. TrEMBL
Match: W9REE9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-41
Identity = 99/223 (44.39%), Postives = 139/223 (62.33%), Query Frame = 1


Query: 23  IDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLK 82
           I+ RC AP TL+     D +SR  Y+ LP+  H+ L VLKLDGSVF ++V +++TVA+LK
Sbjct: 22  IERRCLAPLTLN-----DDVSR--YQKLPQLQHLKLSVLKLDGSVFEVQVVKSATVAELK 81

Query: 83  RAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHM 142
            AIE+ F S       KI+WSL+WGHFCLCYEG+KLI+DK+ I+ YGIK+GDQLQFIRHM
Sbjct: 82  SAIEEFFSSLPKEGQDKISWSLVWGHFCLCYEGQKLINDKSNIRNYGIKEGDQLQFIRHM 141

Query: 143 SINCLSMKKDRKNQTVPCKA-MLFFSPESKAVEENQADGQDDFKD-YQVHRDDSNREEVA 202
           SIN    KK  K +   CK  +L  S  S A EE++ +G +  K+  ++ +++ N     
Sbjct: 142 SINYSPFKKRPKKENTSCKKDLLMLSSGSNACEESEQNGMNVGKESKEIDKEEEN----- 201

Query: 203 SVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAFRIA 244
               A F++A+  +G + YS++ GF +       R S   R A
Sbjct: 202 --GAAQFKMAHFLRGLLSYSKLRGFSRGGGSSDCRTSRPTRFA 230

[Close]

BLAST of CSPI04G02030 vs. TrEMBL
Match: A0A061G7L5_THECC (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma cacao GN=TCM_027215 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.3e-38
Identity = 89/224 (39.73%), Postives = 133/224 (59.38%), Query Frame = 1


Query: 18  RFTRFIDYRCFAPPTLDFDP-------DSDALSRRP--YRLLPRQDHIDLFVLKLDGSVF 77
           R    +D R  AP  L+F+        D+D +  R   YR LP+Q +  L VLKLDGS+F
Sbjct: 17  RVFNLLDRRRLAP--LNFNSRGGGDGDDNDVIVARKLLYRKLPQQRNFKLSVLKLDGSLF 76

Query: 78  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 137
            + V RN+TVA+LK AIE++F +  G  H  I+WS +WGHFCL YEG+KL+++K CI+ +
Sbjct: 77  DVNVGRNATVAELKVAIEELFATLPGDTHGSISWSHVWGHFCLSYEGQKLVNNKACIRNF 136

Query: 138 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADGQDDFKDYQ 197
           GIKDGDQLQFIRHMS+N L +++  K+  VPCK +   S   +  + N  +  +  ++ +
Sbjct: 137 GIKDGDQLQFIRHMSVNQLPLRRRLKHHNVPCKWLSSGSSYHQEKQHNSVNFNNKDENQE 196

Query: 198 VHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEG 233
                 + EE   +     +L +L +G +  +R+WG  +   EG
Sbjct: 197 DSSTSDHYEEEEEIPLPEVKLGHLLRGWLSCTRLWGASRKGPEG 238

[Close]

BLAST of CSPI04G02030 vs. TrEMBL
Match: A0A0B0MCU7_GOSAR (U11/U12 small nuclear ribonucleoprotein 25 kDa OS=Gossypium arboreum GN=F383_18090 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.7e-37
Identity = 94/235 (40.00%), Postives = 137/235 (58.30%), Query Frame = 1


Query: 5   SPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRP--YRLLPRQDHIDLFVLK 64
           S RS   ++ NL    R    +     +   D + DAL  R   YR LP Q  ++L VLK
Sbjct: 10  STRSYNLRVLNLRERGRLCSLKFNRVRSGGGDDEDDALVERQLLYRKLPDQHLLNLSVLK 69

Query: 65  LDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDK 124
           LDGS+F + + RN+TVA+LK AIE++F    G     I+W+ +WGHFCL YEG+KL+++K
Sbjct: 70  LDGSLFDVNIGRNATVAELKVAIEELFTEMAGETQGCISWAHVWGHFCLAYEGQKLVNNK 129

Query: 125 TCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADGQD 184
            CIK +GIKDGDQL+FIRHMS+N   +K+  K+  VPCK    FSP S   +E Q +  +
Sbjct: 130 ACIKNFGIKDGDQLEFIRHMSMNQSPIKRRVKHHGVPCKC---FSPRSSHDQERQENPVN 189

Query: 185 DFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRAS 238
             K+    +D  + EE A ++   F+ A+  +  + ++R     +   EGRN +S
Sbjct: 190 HHKEEDEDQDYYHDEEHA-MSLPEFKFAHFLRRWLSHTRSQSASRRRLEGRNHSS 240

[Close]

BLAST of CSPI04G02030 vs. TrEMBL
Match: B9RV86_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.4e-36
Identity = 100/232 (43.10%), Postives = 143/232 (61.64%), Query Frame = 1


Query: 23  IDYRC-FAPPTLDFDPDSDALS--------RRPYRLLPRQDHIDLFVLKLDGSVFGIRVS 82
           I+ RC  +P +L  D D DA++        R  Y  LP+Q  + L VLKLDGS F + + 
Sbjct: 34  IERRCGLSPLSLKVDED-DAVNGNGGLVVRRYSYLKLPQQ-LLKLTVLKLDGSSFDVNIG 93

Query: 83  RNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDG 142
           RN+TVA+LK+A+E++F S     H KI+WSL+WGHFCL YE +KLI+DK CI+ +GIKDG
Sbjct: 94  RNATVAELKQAVEEIFSSSPEEGHDKISWSLVWGHFCLSYENQKLINDKVCIRNFGIKDG 153

Query: 143 DQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESK--AVEENQADGQD-----DFKD 202
           DQLQFIRHMSIN  S  +   +Q    K++    P SK   VE+ Q   +D     + +D
Sbjct: 154 DQLQFIRHMSIN-YSNSRQSTSQNAVRKSL---GPPSKDANVEKEQKTTEDHTSMNENQD 213

Query: 203 YQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFC-KSASEGRNRAS 238
           Y ++    ++EE+     + F+LA+  +G + YSR+WG   +  S+G+NR S
Sbjct: 214 YNLYDYCEDQEEIPI---SEFKLAHFLRGWLSYSRLWGTASRKGSQGQNRPS 256

[Close]

BLAST of CSPI04G02030 vs. TAIR10
Match: AT1G80060.1 (AT1G80060.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-30
Identity = 76/200 (38.00%), Postives = 111/200 (55.50%), Query Frame = 1


Query: 44  RRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWS 103
           R  Y  LP Q  I L V+KL+GS+F + V+++ +VA+LKRA+E+VF       H  I+WS
Sbjct: 41  RSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWS 100

Query: 104 LIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAM 163
            +WGHFCLCY  ++L++DKT I+  G+ DGDQL F+RH+SI+   M K  K+ +  CK  
Sbjct: 101 HVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLSIDHSPMNKRSKSPS--CKRY 160

Query: 164 LFFSPESKA----VEENQADGQDDF--KDYQVHRDDSNREEVASVARAGFQLANLFKGRV 223
           L     S      ++    +G DD   K Y   +D+        +  A  +L NL KG +
Sbjct: 161 LELDVSSIVNEIQIQNQNQNGVDDVAEKCYPGAQDE--------LPAAESRLVNLIKGWL 220

Query: 224 LYSRIWGFCKSASEGRNRAS 238
            Y+  WG  +   E R+  S
Sbjct: 221 PYAGRWGVSRKGPECRSGPS 230

[Close]

BLAST of CSPI04G02030 vs. TAIR10
Match: AT4G32270.1 (AT4G32270.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.7e-23
Identity = 64/154 (41.56%), Postives = 90/154 (58.44%), Query Frame = 1


Query: 40  DALSRRP---YRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSE 99
           D L RR    Y  +P ++ I L VLKLDGS FGI+V + +TV +LK A+E  F     S 
Sbjct: 20  DGLPRRRSFNYNQMP-EEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISG 79

Query: 100 HYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKN- 159
             KI+W  +WG FCL YE ++LI++   +  +GIKDGDQL+FIRH+S  C+ M K +   
Sbjct: 80  PGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKT 139

Query: 160 -QTVPCKAMLFFS--PESK---AVEENQADGQDD 184
            +    K +  FS  PE++    + E + DG  D
Sbjct: 140 PRVSSFKQLKLFSTTPETRKKNVIREVEEDGVVD 172

[Close]

BLAST of CSPI04G02030 vs. TAIR10
Match: AT5G25340.1 (AT5G25340.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-23
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 1


Query: 47  YRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIW 106
           Y  LP +  I L VLKLDGS F + V  ++TV DLK AIE  F         KI+WS +W
Sbjct: 11  YDKLPNEP-IRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHMSINCL-----SMKKDRKN 156
           GHFCLC+ G+KLI D  CI  YG+KDGD+++F  H+S N +     S K  +KN
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKN 123

[Close]

BLAST of CSPI04G02030 vs. TAIR10
Match: AT3G07860.1 (AT3G07860.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-12
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1


Query: 58  LFVLKLDGSVFGIRVSRNSTVADLKRAIEKVFDS--PGGSEHYKITWSLIWGHFCLCYEG 117
           L V+KLDGS   + V  ++T+ DLK  I+K  +        H  I+W  +W +FCL    
Sbjct: 54  LSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSCNN 113

Query: 118 EKLIDDKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFS 168
           EKL+DD   ++  GI++  Q+ F+ ++      MKK R   +   K  LF S
Sbjct: 114 EKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGRGRHSKRKKHRLFRS 159

[Close]

BLAST of CSPI04G02030 vs. NCBI nr
Match: gi|449469242|ref|XP_004152330.1| (PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus])

HSP 1 Score: 501.5 bits (1290), Expect = 8.2e-139
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 1


Query: 1   MPTTSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPT+SPR DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV
Sbjct: 1   MPTSSPRPDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADG 180
           DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLF SPESKAVEENQADG
Sbjct: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADG 180

Query: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240
           QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF
Sbjct: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240

Query: 241 RIA 244
           RIA
Sbjct: 241 RIA 243

[Close]

BLAST of CSPI04G02030 vs. NCBI nr
Match: gi|659108389|ref|XP_008454172.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo])

HSP 1 Score: 471.5 bits (1212), Expect = 9.1e-130
Identity = 222/242 (91.74%), Postives = 233/242 (96.28%), Query Frame = 1


Query: 1   MPTTSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPT+SP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADG 180
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +LFFSPESKAVEENQADG
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVEENQADG 180

Query: 181 QDDFKDYQVHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAF 240
           +DD KDYQVHRDDSN+EEVAS+ARA FQL+N FKGRVLYSR+WGFCKSASEGRNRASSAF
Sbjct: 181 RDDIKDYQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRASSAF 240

Query: 241 RI 243
           RI
Sbjct: 241 RI 242

[Close]

BLAST of CSPI04G02030 vs. NCBI nr
Match: gi|659108391|ref|XP_008454174.1| (PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo])

HSP 1 Score: 331.6 bits (849), Expect = 1.1e-87
Identity = 152/164 (92.68%), Postives = 158/164 (96.34%), Query Frame = 1


Query: 1   MPTTSPRSDRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFV 60
           MPT+SP SDRTKIANLWRFTRFIDYRCFAPPTLDF+PDSDALSRRPYRLLPRQD IDLFV
Sbjct: 1   MPTSSPHSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLID 120
           LKLDGSVFG+RVSRNSTVADLKRAIE+VFDSPGGSEHYKITWSLIWGHFCLCYEGEKL D
Sbjct: 61  LKLDGSVFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTD 120

Query: 121 DKTCIKGYGIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAML 165
           DK CI+GY IKDGDQLQFIRHMSINCLSMKKDRKNQTVPCK +L
Sbjct: 121 DKACIRGYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTIL 164

[Close]

BLAST of CSPI04G02030 vs. NCBI nr
Match: gi|703101520|ref|XP_010097209.1| (hypothetical protein L484_025757 [Morus notabilis])

HSP 1 Score: 177.2 bits (448), Expect = 3.5e-41
Identity = 99/223 (44.39%), Postives = 139/223 (62.33%), Query Frame = 1


Query: 23  IDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVFGIRVSRNSTVADLK 82
           I+ RC AP TL+     D +SR  Y+ LP+  H+ L VLKLDGSVF ++V +++TVA+LK
Sbjct: 22  IERRCLAPLTLN-----DDVSR--YQKLPQLQHLKLSVLKLDGSVFEVQVVKSATVAELK 81

Query: 83  RAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQLQFIRHM 142
            AIE+ F S       KI+WSL+WGHFCLCYEG+KLI+DK+ I+ YGIK+GDQLQFIRHM
Sbjct: 82  SAIEEFFSSLPKEGQDKISWSLVWGHFCLCYEGQKLINDKSNIRNYGIKEGDQLQFIRHM 141

Query: 143 SINCLSMKKDRKNQTVPCKA-MLFFSPESKAVEENQADGQDDFKD-YQVHRDDSNREEVA 202
           SIN    KK  K +   CK  +L  S  S A EE++ +G +  K+  ++ +++ N     
Sbjct: 142 SINYSPFKKRPKKENTSCKKDLLMLSSGSNACEESEQNGMNVGKESKEIDKEEEN----- 201

Query: 203 SVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRASSAFRIA 244
               A F++A+  +G + YS++ GF +       R S   R A
Sbjct: 202 --GAAQFKMAHFLRGLLSYSKLRGFSRGGGSSDCRTSRPTRFA 230

[Close]

BLAST of CSPI04G02030 vs. NCBI nr
Match: gi|590615459|ref|XP_007023228.1| (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative [Theobroma cacao])

HSP 1 Score: 166.8 bits (421), Expect = 4.8e-38
Identity = 89/224 (39.73%), Postives = 133/224 (59.38%), Query Frame = 1


Query: 18  RFTRFIDYRCFAPPTLDFDP-------DSDALSRRP--YRLLPRQDHIDLFVLKLDGSVF 77
           R    +D R  AP  L+F+        D+D +  R   YR LP+Q +  L VLKLDGS+F
Sbjct: 17  RVFNLLDRRRLAP--LNFNSRGGGDGDDNDVIVARKLLYRKLPQQRNFKLSVLKLDGSLF 76

Query: 78  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 137
            + V RN+TVA+LK AIE++F +  G  H  I+WS +WGHFCL YEG+KL+++K CI+ +
Sbjct: 77  DVNVGRNATVAELKVAIEELFATLPGDTHGSISWSHVWGHFCLSYEGQKLVNNKACIRNF 136

Query: 138 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFFSPESKAVEENQADGQDDFKDYQ 197
           GIKDGDQLQFIRHMS+N L +++  K+  VPCK +   S   +  + N  +  +  ++ +
Sbjct: 137 GIKDGDQLQFIRHMSVNQLPLRRRLKHHNVPCKWLSSGSSYHQEKQHNSVNFNNKDENQE 196

Query: 198 VHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEG 233
                 + EE   +     +L +L +G +  +R+WG  +   EG
Sbjct: 197 DSSTSDHYEEEEEIPLPEVKLGHLLRGWLSCTRLWGASRKGPEG 238

The following BLAST results are available for this feature:

BLAST of CSPI04G02030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SNR25_BOVIN	5.0e-11	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 ...	[more]
SNR25_MOUSE	5.0e-11	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp2...	[more]
U1125_ARATH	1.5e-10	33.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana G...	[more]
SNR25_HUMAN	1.9e-10	36.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP2...	[more]

BLAST of CSPI04G02030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTJ1_CUCSA	5.7e-139	98.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006470 PE=4 SV=1	[more]
W9REE9_9ROSA	2.5e-41	44.39	Uncharacterized protein OS=Morus notabilis GN=L484_025757 PE=4 SV=1	[more]
A0A061G7L5_THECC	3.3e-38	39.73	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative OS=Theobroma ca...	[more]
A0A0B0MCU7_GOSAR	3.7e-37	40.00	U11/U12 small nuclear ribonucleoprotein 25 kDa OS=Gossypium arboreum GN=F383_180...	[more]
B9RV86_RICCO	1.4e-36	43.10	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0900820 PE=4 SV=1	[more]

BLAST of CSPI04G02030 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80060.1	1.8e-30	38.00	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	2.7e-23	41.56	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	4.6e-23	48.25	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	8.2e-12	33.93	Ubiquitin-like superfamily protein	[more]

BLAST of CSPI04G02030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469242\|ref\|XP_004152330.1\|	8.2e-139	98.77	PREDICTED: uncharacterized protein LOC101206096 [Cucumis sativus]	[more]
gi\|659108389\|ref\|XP_008454172.1\|	9.1e-130	91.74	PREDICTED: uncharacterized protein LOC103494657 isoform X1 [Cucumis melo]	[more]
gi\|659108391\|ref\|XP_008454174.1\|	1.1e-87	92.68	PREDICTED: uncharacterized protein LOC103494657 isoform X2 [Cucumis melo]	[more]
gi\|703101520\|ref\|XP_010097209.1\|	3.5e-41	44.39	hypothetical protein L484_025757 [Morus notabilis]	[more]
gi\|590615459\|ref\|XP_007023228.1\|	4.8e-38	39.73	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative [Theobroma caca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G02030.1	CSPI04G02030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 53..145 score: 4.1
None	No IPR available	PANTHER	PTHR14942	FAMILY NOT NAMED	coord: 47..241 score: 8.9
None	No IPR available	PANTHER	PTHR14942:SF2	SUBFAMILY NOT NAMED	coord: 47..241 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G02030	Cla012750	Watermelon (97103) v1	cpiwmB307
CSPI04G02030	Csa4G006470	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G02030	ClCG07G012170	Watermelon (Charleston Gray)	cpiwcgB343
CSPI04G02030	MELO3C032858.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G02030	CsaV3_4G001990	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G02030	Cla97C07G138910	Watermelon (97103) v2	cpiwmbB333
CSPI04G02030	Bhi01G002812	Wax gourd	cpiwgoB368
CSPI04G02030	Cucsa.095980	Cucumber (Gy14) v1	cgycpiB103
CSPI04G02030	CmaCh01G001540	Cucurbita maxima (Rimu)	cmacpiB480
CSPI04G02030	CmoCh01G001610	Cucurbita moschata (Rifu)	cmocpiB470
CSPI04G02030	Cp4.1LG02g14950	Cucurbita pepo (Zucchini)	cpecpiB570
CSPI04G02030	CsGy4G001960	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G02030	Carg04221	Silver-seed gourd	carcpiB0232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G02030	Wild cucumber (PI 183967)	cpicpiB072
CSPI04G02030	Cucurbita moschata (Rifu)	cmocpiB250
CSPI04G02030	Wild cucumber (PI 183967)	cpicpiB172
CSPI04G02030	Cucumber (Gy14) v1	cgycpiB125
CSPI04G02030	Cucumber (Gy14) v1	cgycpiB245
CSPI04G02030	Cucurbita maxima (Rimu)	cmacpiB263
CSPI04G02030	Cucurbita maxima (Rimu)	cmacpiB470
CSPI04G02030	Cucurbita moschata (Rifu)	cmocpiB460
CSPI04G02030	Cucumber (Chinese Long) v2	cpicuB174
CSPI04G02030	Melon (DHL92) v3.5.1	cpimeB273
CSPI04G02030	Melon (DHL92) v3.5.1	cpimeB284
CSPI04G02030	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G02030	Watermelon (Charleston Gray)	cpiwcgB275
CSPI04G02030	Watermelon (Charleston Gray)	cpiwcgB351
CSPI04G02030	Watermelon (97103) v1	cpiwmB301
CSPI04G02030	Cucurbita pepo (Zucchini)	cpecpiB576
CSPI04G02030	Cucurbita pepo (Zucchini)	cpecpiB617
CSPI04G02030	Bottle gourd (USVL1VR-Ls)	cpilsiB268
CSPI04G02030	Bottle gourd (USVL1VR-Ls)	cpilsiB311
CSPI04G02030	Bottle gourd (USVL1VR-Ls)	cpilsiB317
CSPI04G02030	Melon (DHL92) v3.6.1	cpimedB271
CSPI04G02030	Melon (DHL92) v3.6.1	cpimedB279
CSPI04G02030	Cucumber (Gy14) v2	cgybcpiB325
CSPI04G02030	Silver-seed gourd	carcpiB0133
CSPI04G02030	Silver-seed gourd	carcpiB0233
CSPI04G02030	Cucumber (Chinese Long) v3	cpicucB205
CSPI04G02030	Cucumber (Chinese Long) v3	cpicucB249
CSPI04G02030	Watermelon (97103) v2	cpiwmbB340
CSPI04G02030	Watermelon (97103) v2	cpiwmbB344