Cucsa.085870 (gene) Cucumber (Gy14) v1

NameCucsa.085870
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDUF4228 domain protein
Locationscaffold00870 : 233405 .. 234186 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTCTTTTTAAATATATTTTATTGGCCACCTAATTTTCTACCTGCGCCACGTAAGACCCCGTCGCGTCCACCGTGGCTCTTTCTCCGACGCGGTCTCTTTCCGTCCCTTCCCTTCCCCTTCCCCTTCCTTCTCTCTCTATTTAAACAAAAAATTTCCCCTAATTTCTAAATCCCAAAATCGAAATCATTTCGTAAACTCTCAAAAGAAGAAAAAGCAAGAAAGAAATCACAGTAATGGGCAACTGTTGCCGAAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGAATTGTGTGTAAAAAGAATCTATAGGGAAAGGAAATTTGTTGATTGGTTTTGTACAAAATTTGATCCCGCGTTGTTAGTTATATTGAGATTTGTTTTGGTTGTATATGAAAATTGGTTGCCGTATATTGTAAATTTTAGCGCAGATTTGCATTTATTGGAAGGTGGAGAATCATGTGAAGAAAGATTAAA

mRNA sequence

TCTTTCTTTTTAAATATATTTTATTGGCCACCTAATTTTCTACCTGCGCCACGTAAGACCCCGTCGCGTCCACCGTGGCTCTTTCTCCGACGCGGtctctttccgtcccttcccttccccttccccttccttctctCTCTATTTAAACAAAAAATTTCCCCTAATTTCTAAATCCCAAAATCGAAATCATTTCGTAAACTCTCAAAAGAAGAAAAAGCAAGAAAGAAATCACAGTAATGGGCAACTGTTGCCGAAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGAATTGTGTGTAAAAAGAATCTATAGGGAAAGGAAATTTGTTGATTGGTTTTGTACAAAATTTGATCCCGCGTTGTTAGTTATATTGAGATTTGTTTTGGTTGTATATGAAAATTGGTTGCCGTATATTGTAAATTTTAGCGCAGATTTGCATTTATTGGAAGGTGGAGAATCATGTGAAGAAAGATTAAA

Coding sequence (CDS)

ATGGGCAACTGTTGCCGAAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

Protein sequence

MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY*
BLAST of Cucsa.085870 vs. TrEMBL
Match: A0A0A0LRL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.6e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60

Query: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 119
           LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Sbjct: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

BLAST of Cucsa.085870 vs. TrEMBL
Match: B9RXL9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904870 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.9e-17
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 1

Query: 1   MGNCCR--SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGD---PEKHRLLGEK--- 60
           MGNCCR  S SS++V+AGDDWGS   +        +S++         E+ RLLGE    
Sbjct: 1   MGNCCRRVSSSSSVVWAGDDWGSVGQE-------KISSSDHSHHHDITERQRLLGEDLDM 60

Query: 61  -----EAGSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEE-----EFEIE 117
                 + S S   VKIK+TK+ELE L+ +++MQGLS+E+V+  ++         E E  
Sbjct: 61  MGGFMSSSSSSTREVKIKITKKELEELMARVDMQGLSMEEVLASLINSSSADKNLEMECH 120

BLAST of Cucsa.085870 vs. TrEMBL
Match: A0A061GFR6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030216 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 1

Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGR--GCGRNVSAATSGGDPEKHRLLGEKEAGSCS 60
           MGNC R   ++  +  DDWGS +S H +    G  ++        EK  LLG K   S S
Sbjct: 1   MGNCLRHGKAS--WDDDDWGSLASTHRQEDDDGEVINIT------EKESLLGAKRVASLS 60

Query: 61  QPL-----VKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQS 117
                   VKI ++K+ELE LV+K++MQGL+LEQV+  M+KG + +E+EHHR W+P LQS
Sbjct: 61  SSSPSTREVKITISKKELEQLVRKVDMQGLTLEQVLVSMVKGGDVYELEHHRPWKPVLQS 115

BLAST of Cucsa.085870 vs. TrEMBL
Match: B9H1B9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01580g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-16
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 1

Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSA---ATSGGDPEKHRLLGEKEAGSC 60
           MGNCC+S SS++V+A DDW S +            A      G + E+ RLLG     S 
Sbjct: 1   MGNCCKSASSSVVWADDDWASVAHHKHHHAAMFDGADDHEEHGTNMERQRLLGTGSLSSG 60

Query: 61  SQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEE-EFEIE-HHRSWRPSLQSIP 117
           S   VKI++TKRELE ++ ++ +QGLS+EQV+G ++   + +FE++ +H+ W+P+LQSIP
Sbjct: 61  STREVKIRITKRELEEIMARVSIQGLSMEQVLGMLVNSTDLKFEMDLNHKHWKPALQSIP 120

BLAST of Cucsa.085870 vs. TrEMBL
Match: I1M107_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G205200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-15
Identity = 60/135 (44.44%), Postives = 75/135 (55.56%), Query Frame = 1

Query: 1   MGNCCRS--QSSTMVFAGDDWGSFSSKHGRGCGRNVSA-----ATSGGDPEKHRLLGEKE 60
           MGNCC S  +SS+M + GDDWGSFSS   R   R           S G+ EK +LLG   
Sbjct: 1   MGNCCASATESSSMDWGGDDWGSFSSSKRRRSSRKNKVFDEVHGESLGNVEKEKLLGALR 60

Query: 61  AGSCSQPLVKIKMTKRELEVLVKKLE----MQG----LSLEQVIGRMMKGEE----EFEI 117
           A S +   VKIK++K+ELE L+   E     QG     S EQV+ R++   +    E+  
Sbjct: 61  ASSDANGKVKIKISKKELEKLLGGKENNSNKQGDHGHASAEQVLARLIHARDHASNEYHD 120

BLAST of Cucsa.085870 vs. TAIR10
Match: AT4G21920.1 (AT4G21920.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-11
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 1

Query: 1   MGNC-CRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGE-------K 60
           MGNC C ++ +T  ++GDD GS++ +  R   R+        D EK  LLGE        
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRR--RSTVVHDDNDDGEK--LLGETSNVTSTS 60

Query: 61  EAGSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMM-KGEEEFEI------EHHR 117
            + S  +  +KI++TK+ELE L++ + ++ L+ E+++ +++ +G ++          HH+
Sbjct: 61  SSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ 120

BLAST of Cucsa.085870 vs. NCBI nr
Match: gi|778658415|ref|XP_011652689.1| (PREDICTED: uncharacterized protein LOC105435046 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.2e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60
           MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60

Query: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 119
           LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Sbjct: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

BLAST of Cucsa.085870 vs. NCBI nr
Match: gi|659068809|ref|XP_008446374.1| (PREDICTED: uncharacterized protein LOC103489132 [Cucumis melo])

HSP 1 Score: 198.7 bits (504), Expect = 5.6e-48
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 1

Query: 12  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIKMTKRE 71
           MVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIKMTKRE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRE 60

Query: 72  LEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 119
           LEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 61  LEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

BLAST of Cucsa.085870 vs. NCBI nr
Match: gi|255554901|ref|XP_002518488.1| (PREDICTED: uncharacterized protein LOC8284205 [Ricinus communis])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = 1

Query: 1   MGNCCR--SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGD---PEKHRLLGEK--- 60
           MGNCCR  S SS++V+AGDDWGS   +        +S++         E+ RLLGE    
Sbjct: 1   MGNCCRRVSSSSSVVWAGDDWGSVGQE-------KISSSDHSHHHDITERQRLLGEDLDM 60

Query: 61  -----EAGSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEE-----EFEIE 117
                 + S S   VKIK+TK+ELE L+ +++MQGLS+E+V+  ++         E E  
Sbjct: 61  MGGFMSSSSSSTREVKIKITKKELEELMARVDMQGLSMEEVLASLINSSSADKNLEMECH 120

BLAST of Cucsa.085870 vs. NCBI nr
Match: gi|747095805|ref|XP_011095795.1| (PREDICTED: uncharacterized protein LOC105175147 [Sesamum indicum])

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 1

Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60
           MGNC R + S   + G+DWGSF+S    G   ++ + + G   +K  LLGE + G  S  
Sbjct: 1   MGNCIR-KGSAAEWGGEDWGSFASGDKTGTRGDLYSHSLG--VQKKSLLGESD-GVLSST 60

Query: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 117
            VKIK++K+ELE LVKK + QGLS++QV+ ++M   + FE  H RSWRP+LQSIPE
Sbjct: 61  EVKIKISKKELEQLVKKADAQGLSVQQVLAQLMDVGDRFE-AHQRSWRPALQSIPE 111

BLAST of Cucsa.085870 vs. NCBI nr
Match: gi|590626072|ref|XP_007026063.1| (Uncharacterized protein TCM_030216 [Theobroma cacao])

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 1

Query: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGR--GCGRNVSAATSGGDPEKHRLLGEKEAGSCS 60
           MGNC R   ++  +  DDWGS +S H +    G  ++        EK  LLG K   S S
Sbjct: 1   MGNCLRHGKAS--WDDDDWGSLASTHRQEDDDGEVINIT------EKESLLGAKRVASLS 60

Query: 61  QPL-----VKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQS 117
                   VKI ++K+ELE LV+K++MQGL+LEQV+  M+KG + +E+EHHR W+P LQS
Sbjct: 61  SSSPSTREVKITISKKELEQLVRKVDMQGLTLEQVLVSMVKGGDVYELEHHRPWKPVLQS 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LRL1_CUCSA3.6e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063490 PE=4 SV=1[more]
B9RXL9_RICCO7.9e-1742.54Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904870 PE=4 SV=1[more]
A0A061GFR6_THECC2.3e-1644.72Uncharacterized protein OS=Theobroma cacao GN=TCM_030216 PE=4 SV=1[more]
B9H1B9_POPTR3.9e-1642.15Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01580g PE=4 SV=1[more]
I1M107_SOYBN4.3e-1544.44Uncharacterized protein OS=Glycine max GN=GLYMA_13G205200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G21920.12.6e-1132.06 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778658415|ref|XP_011652689.1|5.2e-62100.00PREDICTED: uncharacterized protein LOC105435046 [Cucumis sativus][more]
gi|659068809|ref|XP_008446374.1|5.6e-4891.67PREDICTED: uncharacterized protein LOC103489132 [Cucumis melo][more]
gi|255554901|ref|XP_002518488.1|1.1e-1642.54PREDICTED: uncharacterized protein LOC8284205 [Ricinus communis][more]
gi|747095805|ref|XP_011095795.1|3.3e-1647.41PREDICTED: uncharacterized protein LOC105175147 [Sesamum indicum][more]
gi|590626072|ref|XP_007026063.1|3.3e-1644.72Uncharacterized protein TCM_030216 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.085870.1Cucsa.085870.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 61..81
scor
NoneNo IPR availablePANTHERPTHR33647FAMILY NOT NAMEDcoord: 2..116
score: 1.8
NoneNo IPR availablePANTHERPTHR33647:SF4SUBFAMILY NOT NAMEDcoord: 2..116
score: 1.8

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.085870Cucsa.045280Cucumber (Gy14) v1cgycgyB002