CmoCh03G005570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G005570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Expression of the gene is downregulated in the presence of paraquat, putative
Location	Cmo_Chr03 : 5527301 .. 5527675 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCTGTGGTGTCGGGCGGCAATCGGAGGGCTCTGCCGCCGAAGAACCTCCGTCAGAGAAGGCATGGAGCTAGTTCTTGTTCTACTACGATCAAGGGTTCAAAAGAGGGTAATATGAGAGAGTTGAAAATAAGGATGACGAAAAAGGAGCTAAAGGAATTGGTTGGATGGTTGAACATGGCGGACTCCAGTTTTGAACAAGTTATGGCTCGTCTTGTGAACGTTATTAGCGAGCAAAATGGTGATGATAGTGAAGAAGATGATAGGAATATTGGGCAGATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAGAGCATTCCTGAGATAATCTGA

mRNA sequence

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCTGTGGTGTCGGGCGGCAATCGGAGGGCTCTGCCGCCGAAGAACCTCCGTCAGAGAAGGCATGGAGCTAGTTCTTGTTCTACTACGATCAAGGGTTCAAAAGAGGGTAATATGAGAGAGTTGAAAATAAGGATGACGAAAAAGGAGCTAAAGGAATTGGTTGGATGGTTGAACATGGCGGACTCCAGTTTTGAACAAGTTATGGCTCGTCTTGTGAACGTTATTAGCGAGCAAAATGGTGATGATAGTGAAGAAGATGATAGGAATATTGGGCAGATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAGAGCATTCCTGAGATAATCTGA

Coding sequence (CDS)

ATGGGTAACTGTTGCAGAGGTCAATCCTCCACTCCTGTGGTGTCGGGCGGCAATCGGAGGGCTCTGCCGCCGAAGAACCTCCGTCAGAGAAGGCATGGAGCTAGTTCTTGTTCTACTACGATCAAGGGTTCAAAAGAGGGTAATATGAGAGAGTTGAAAATAAGGATGACGAAAAAGGAGCTAAAGGAATTGGTTGGATGGTTGAACATGGCGGACTCCAGTTTTGAACAAGTTATGGCTCGTCTTGTGAACGTTATTAGCGAGCAAAATGGTGATGATAGTGAAGAAGATGATAGGAATATTGGGCAGATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTCTGCAGAGCATTCCTGAGATAATCTGA

Homology

[Close]

BLAST of CmoCh03G005570 vs. TrEMBL
Match: A0A0A0KHU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVVSGGNRRALPPKNLRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60
           MGNCC+ QSSTPV+ G +    P KN  QRR+   S       SKE N+RE+KIRMTKKE
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           L+ELVGWLNMADSSFEQVMARLVNVI+ QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNGDNNND------QVVKLRQQRSWRPSLQSI 111

Query: 121 PEII 125
           PE+I
Sbjct: 121 PEMI 111

[Close]

BLAST of CmoCh03G005570 vs. TrEMBL
Match: A0A059CAC2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04063 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 43/125 (34.40%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVV-SGGNRRALPPKNLRQRRHGASSCSTTIKGSKEGNMRELKIRMTKK 60
           MGNCCR +SS+  + +G +  +LP     ++R    +    +  S     RE+KI+++K+
Sbjct: 1   MGNCCRAESSSSTIWAGDDWNSLPCDGEGKKRLLDDADGKKVSSSSSSRRREIKIQISKE 60

Query: 61  ELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQS 120
           EL++LV  +     S EQV+  L+N             DR      K  + RSWRP+LQS
Sbjct: 61  ELEKLVHKIEAQGLSLEQVLPLLIN---------ENTFDRRGSGFTKYGRHRSWRPALQS 116

Query: 121 IPEII 125
           IPE I
Sbjct: 121 IPEAI 116

[Close]

BLAST of CmoCh03G005570 vs. TrEMBL
Match: A0A059CAN0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04060 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 1   MGNCCR-GQSSTPVVSGGNRRALPPKNLRQRRH---GASSCSTTIKGSKEGNMRELKIRM 60
           MGNCCR G SS+ + +G +  +LP      ++     A     +   S   + RE+KI++
Sbjct: 1   MGNCCRAGSSSSTIWAGDDWNSLPRDGGEGKKRLLDDADGTKVSSSSSSSSSRREIKIQI 60

Query: 61  TKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPS 120
           +K+EL++LV  +     S EQV+  L+N             DR      K    RSWRP+
Sbjct: 61  SKEELEKLVQQIEAQGLSLEQVLPLLIN---------KNTFDRRGSGFAKHGCHRSWRPA 119

Query: 121 LQSIPEII 125
           LQSIPE+I
Sbjct: 121 LQSIPEVI 119

[Close]

BLAST of CmoCh03G005570 vs. TrEMBL
Match: A0A0A0LRL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-07
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVVSGGNRRALPPKNLRQRRHGASSCST-------TIKGSKEGNMRE-- 60
           MGNCCR QSST V +G +  +   K+ R      S+ ++        + G KE       
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60

Query: 61  -LKIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQ 120
            +KI+MTK+EL+ LV  L M   S EQV+ R++           EE+        ++   
Sbjct: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMK---------GEEE-------FEIEHH 116

Query: 121 RSWRPSLQSIPE 123
           RSWRPSLQSIPE
Sbjct: 121 RSWRPSLQSIPE 116

[Close]

BLAST of CmoCh03G005570 vs. TrEMBL
Match: A0A059CAV5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04062 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVV-SGGNRRALPPKNLRQRRH---GASSCSTTIKGSKEGNMRELKIRM 60
           MGNCCR +SS+  + +G +  +LP +    +      A     +   S     RE+KI++
Sbjct: 1   MGNCCRPESSSSTIWAGDDWNSLPREGGEGKERLLDDADGNKVSSSSSSSSRRREIKIQI 60

Query: 61  TKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPS 120
           +K+EL++LV  +     S EQV+  ++N             DR      K    RSWRP+
Sbjct: 61  SKEELEKLVQKIEAQGLSLEQVLPLVIN---------KNTFDRRGSGFTKHGCHRSWRPA 119

Query: 121 LQSIPEII 125
           LQSIPE+I
Sbjct: 121 LQSIPEVI 119

[Close]

BLAST of CmoCh03G005570 vs. NCBI nr
Match: gi|659081008|ref|XP_008441100.1| (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 87/126 (69.05%), Postives = 99/126 (78.57%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVVSGGNRRALPPKNLRQRRH--GASSCSTTIKGSKEGNMRELKIRMTK 60
           MGNCC+GQ STPV    +RR  P KN RQRRH  G+S CS      KE N+RE+KIRMTK
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCS------KETNLREVKIRMTK 60

Query: 61  KELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQ 120
           KEL+ELVGWLNMADSSFE VMARLVNVI++QNGD++ +      Q+VKLRQQRSWRPSLQ
Sbjct: 61  KELEELVGWLNMADSSFEHVMARLVNVINDQNGDNNND------QVVKLRQQRSWRPSLQ 114

Query: 121 SIPEII 125
           SIPEII
Sbjct: 121 SIPEII 114

[Close]

BLAST of CmoCh03G005570 vs. NCBI nr
Match: gi|700193914|gb|KGN49118.1| (hypothetical protein Csa_6G514300 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVVSGGNRRALPPKNLRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60
           MGNCC+ QSSTPV+ G +    P KN  QRR+   S       SKE N+RE+KIRMTKKE
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60

Query: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120
           L+ELVGWLNMADSSFEQVMARLVNVI+ QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNGDNNND------QVVKLRQQRSWRPSLQSI 111

Query: 121 PEII 125
           PE+I
Sbjct: 121 PEMI 111

[Close]

BLAST of CmoCh03G005570 vs. NCBI nr
Match: gi|702359836|ref|XP_010059617.1| (PREDICTED: uncharacterized protein LOC104447595 [Eucalyptus grandis])

HSP 1 Score: 65.5 bits (158), Expect = 7.6e-08
Identity = 43/125 (34.40%), Postives = 65/125 (52.00%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVV-SGGNRRALPPKNLRQRRHGASSCSTTIKGSKEGNMRELKIRMTKK 60
           MGNCCR +SS+  + +G +  +LP     ++R    +    +  S     RE+KI+++K+
Sbjct: 1   MGNCCRAESSSSTIWAGDDWNSLPCDGEGKKRLLDDADGKKVSSSSSSRRREIKIQISKE 60

Query: 61  ELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQS 120
           EL++LV  +     S EQV+  L+N             DR      K  + RSWRP+LQS
Sbjct: 61  ELEKLVHKIEAQGLSLEQVLPLLIN---------ENTFDRRGSGFTKYGRHRSWRPALQS 116

Query: 121 IPEII 125
           IPE I
Sbjct: 121 IPEAI 116

[Close]

BLAST of CmoCh03G005570 vs. NCBI nr
Match: gi|629110168|gb|KCW75314.1| (hypothetical protein EUGRSUZ_E04060 [Eucalyptus grandis])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 1   MGNCCR-GQSSTPVVSGGNRRALPPKNLRQRRH---GASSCSTTIKGSKEGNMRELKIRM 60
           MGNCCR G SS+ + +G +  +LP      ++     A     +   S   + RE+KI++
Sbjct: 1   MGNCCRAGSSSSTIWAGDDWNSLPRDGGEGKKRLLDDADGTKVSSSSSSSSSRREIKIQI 60

Query: 61  TKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPS 120
           +K+EL++LV  +     S EQV+  L+N             DR      K    RSWRP+
Sbjct: 61  SKEELEKLVQQIEAQGLSLEQVLPLLIN---------KNTFDRRGSGFAKHGCHRSWRPA 119

Query: 121 LQSIPEII 125
           LQSIPE+I
Sbjct: 121 LQSIPEVI 119

[Close]

BLAST of CmoCh03G005570 vs. NCBI nr
Match: gi|802779229|ref|XP_012091351.1| (PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas])

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-07
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 1


Query: 1   MGNCCRGQSSTPVVSGGNR--RALPPKNLRQRRHGASSCSTTIKGSKE------------ 60
           MGNCC   SS+ VV  G+      P K+  +R H            +E            
Sbjct: 1   MGNCCIHGSSSSVVWAGDDWGSVRPEKSFHRRNHNTMIIEKQRLLGEEMREWFNYNPNLS 60

Query: 61  -GNMRELKIRMTKKELKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMV 120
             + RE++I++TKKEL+EL+  +NM   + EQV+A L+N   + +  +  E D +     
Sbjct: 61  LSSTREVRIKITKKELEELMARINMQGLTMEQVLASLINSAGDHSKFEIMEHDHH----- 120

Query: 121 KLRQQRSWRPSLQSIPEI 124
                RSW+P+LQSIPE+
Sbjct: 121 ----HRSWKPALQSIPEV 129

The following BLAST results are available for this feature:

BLAST of CmoCh03G005570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G005570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHU7_CUCSA	1.1e-32	66.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514300 PE=4 SV=1	[more]
A0A059CAC2_EUCGR	5.3e-08	34.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04063 PE=4 SV=1	[more]
A0A059CAN0_EUCGR	2.6e-07	34.38	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04060 PE=4 SV=1	[more]
A0A0A0LRL1_CUCSA	5.9e-07	36.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063490 PE=4 SV=1	[more]
A0A059CAV5_EUCGR	3.8e-06	32.81	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04062 PE=4 SV=1	[more]

BLAST of CmoCh03G005570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G005570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081008\|ref\|XP_008441100.1\|	1.5e-35	69.05	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo]	[more]
gi\|700193914\|gb\|KGN49118.1\|	1.5e-32	66.13	hypothetical protein Csa_6G514300 [Cucumis sativus]	[more]
gi\|702359836\|ref\|XP_010059617.1\|	7.6e-08	34.40	PREDICTED: uncharacterized protein LOC104447595 [Eucalyptus grandis]	[more]
gi\|629110168\|gb\|KCW75314.1\|	3.8e-07	34.38	hypothetical protein EUGRSUZ_E04060 [Eucalyptus grandis]	[more]
gi\|802779229\|ref\|XP_012091351.1\|	6.5e-07	32.61	PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G005570.1	CmoCh03G005570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647	FAMILY NOT NAMED	coord: 2..124 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G005570	Cucsa.045280	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G005570	Cucsa.085870	Cucumber (Gy14) v1	cgycmoB0159
CmoCh03G005570	CmaCh03G005330	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G005570	Cla014457	Watermelon (97103) v1	cmowmB623
CmoCh03G005570	Cla019385	Watermelon (97103) v1	cmowmB614
CmoCh03G005570	Csa1G063490	Cucumber (Chinese Long) v2	cmocuB637
CmoCh03G005570	Csa6G514300	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G005570	MELO3C002460	Melon (DHL92) v3.5.1	cmomeB581
CmoCh03G005570	MELO3C007385	Melon (DHL92) v3.5.1	cmomeB600
CmoCh03G005570	ClCG01G022040	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G005570	ClCG03G004770	Watermelon (Charleston Gray)	cmowcgB583
CmoCh03G005570	CSPI01G10740	Wild cucumber (PI 183967)	cmocpiB648
CmoCh03G005570	CSPI06G33620	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G005570	Lsi02G006040	Bottle gourd (USVL1VR-Ls)	cmolsiB596
CmoCh03G005570	Lsi01G004200	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G005570	Cp4.1LG10g09660	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G005570	MELO3C002460.2	Melon (DHL92) v3.6.1	cmomedB667
CmoCh03G005570	MELO3C007385.2	Melon (DHL92) v3.6.1	cmomedB686
CmoCh03G005570	CsaV3_6G049100	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G005570	Cla97C03G055920	Watermelon (97103) v2	cmowmbB656
CmoCh03G005570	Cla97C01G021680	Watermelon (97103) v2	cmowmbB642
CmoCh03G005570	Bhi08G001513	Wax gourd	cmowgoB0805
CmoCh03G005570	Bhi03G000438	Wax gourd	cmowgoB0781
CmoCh03G005570	CsGy6G033170	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G005570	CsGy1G010640	Cucumber (Gy14) v2	cgybcmoB116
CmoCh03G005570	Carg13700	Silver-seed gourd	carcmoB1246
CmoCh03G005570	Carg07545	Silver-seed gourd	carcmoB1353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G005570	Cucurbita moschata (Rifu)	cmocmoB182
CmoCh03G005570	Cucurbita moschata (Rifu)	cmocmoB335
CmoCh03G005570	Cucurbita moschata (Rifu)	cmocmoB362
CmoCh03G005570	Cucurbita moschata (Rifu)	cmocmoB394
CmoCh03G005570	Cucurbita moschata (Rifu)	cmocmoB428
CmoCh03G005570	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G005570	Cucurbita maxima (Rimu)	cmacmoB235
CmoCh03G005570	Cucurbita maxima (Rimu)	cmacmoB418
CmoCh03G005570	Cucurbita maxima (Rimu)	cmacmoB529
CmoCh03G005570	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G005570	Watermelon (Charleston Gray)	cmowcgB576
CmoCh03G005570	Watermelon (97103) v1	cmowmB640
CmoCh03G005570	Cucurbita pepo (Zucchini)	cmocpeB602
CmoCh03G005570	Cucurbita pepo (Zucchini)	cmocpeB609
CmoCh03G005570	Cucurbita pepo (Zucchini)	cmocpeB631
CmoCh03G005570	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G005570	Bottle gourd (USVL1VR-Ls)	cmolsiB581
CmoCh03G005570	Cucumber (Gy14) v2	cgybcmoB947
CmoCh03G005570	Cucumber (Gy14) v2	cgybcmoB231
CmoCh03G005570	Melon (DHL92) v3.6.1	cmomedB670
CmoCh03G005570	Silver-seed gourd	carcmoB0045
CmoCh03G005570	Silver-seed gourd	carcmoB0886
CmoCh03G005570	Silver-seed gourd	carcmoB1186
CmoCh03G005570	Cucumber (Chinese Long) v3	cmocucB0760
CmoCh03G005570	Cucumber (Chinese Long) v3	cmocucB0797
CmoCh03G005570	Watermelon (97103) v2	cmowmbB650