CsaV3_1G010810 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010810
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA-directed RNA polymerase subunit beta like
Locationchr1 : 6714555 .. 6715197 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCTTCAAGACAGATTCTTACGAGACTTTTAGGTATATATGTATTCTTTCTTTTTAAATATATTTTATTGGCCACCTAATTTTCTACCTGCGCCACGTAAGACCCCGTCGCGTCCACCGTGGCTCTTTCTCCGACGCGGTCTCTTTCCGTCCTTTCCCTTCCCCTTCCCCTTCCTTCTCTCTCTATTTAAACAAAAAATTTCCCCTAATTCCTAAATCCCAAAATCGAAATCATTTCGTAAACTCTCAAAAGAAGAAAAAGCAAGAAAGAAATCACAGTAATGGGCAACTGTTGCCGAAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

mRNA sequence

ATGACCTTCTTCAAGACAGATTCTTACGAGACTTTTAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

Coding sequence (CDS)

ATGACCTTCTTCAAGACAGATTCTTACGAGACTTTTAGCCAATCCTCTACGATGGTCTTCGCCGGTGATGATTGGGGCTCCTTCAGTTCCAAGCACGGGCGTGGTTGCGGCAGAAACGTTTCCGCTGCAACCTCCGGCGGCGATCCAGAGAAACATAGATTACTTGGAGAGAAGGAAGCGGGGTCGTGTTCGCAGCCGCTAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGTTCTGGTGAAGAAGCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGGCGGATGATGAAGGGTGAAGAAGAATTTGAAATCGAGCATCATCGATCATGGAGGCCTTCTCTTCAAAGCATTCCAGAGGATTACTGA

Protein sequence

MTFFKTDSYETFSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Homology
[Close]
BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_011652689.1 (PREDICTED: uncharacterized protein LOC105435046 [Cucumis sativus] >KGN64525.1 hypothetical protein Csa_1G063490 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 4.3e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Sbjct: 67  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

[Close]
BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_008446374.1 (PREDICTED: uncharacterized protein LOC103489132 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 8.1e-46
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 18  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIKMTKRE 77
           MVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIKMTKRE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRE 60

Query: 78  LEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           LEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 61  LEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

[Close]
BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_022933211.1 (uncharacterized protein LOC111440057 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 4.3e-39
Identity = 88/110 (80.00%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTM+FAGDDWGSFSSKHGRG G N  A+TS GDPEK+RLLGEK+  SC QP VKIKM
Sbjct: 7   SQSSTMIFAGDDWGSFSSKHGRGRGGN--ASTSSGDPEKYRLLGEKQTSSCPQPQVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 123
           TKRELE LVK LE++GLSLEQVIGRMM  E+EF+ EHHRSWRPSLQSIPE
Sbjct: 67  TKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]
BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_023001321.1 (uncharacterized protein LOC111495485 [Cucurbita maxima])

HSP 1 Score: 169.1 bits (427), Expect = 9.6e-39
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 0 

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTMVFAGDDWGSFSSKHGRG G N SA  S GDPEK+RLLGEK+  SC QP VKIKM
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGRGGNASA--SRGDPEKYRLLGEKQTSSCPQPQVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 123
           TKRELE LVK LE++GLSLEQVIGRMM  E+EF+ EHHRSWRPSLQSIPE
Sbjct: 67  TKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]
BLAST of CsaV3_1G010810 vs. NCBI nr
Match: XP_023520212.1 (uncharacterized protein LOC111783515 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 87/110 (79.09%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           +QSS+MVFAGDDWGSFSSKHGRG G N  A+TS GDPEK+RLLGEK+  SC QP VKIKM
Sbjct: 7   TQSSSMVFAGDDWGSFSSKHGRGRGGN--ASTSSGDPEKYRLLGEKQTSSCPQPQVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPE 123
           TKRELE LVK LE++GLSLEQVIGRMM  E+EF+ EHHRSWRPSLQSIPE
Sbjct: 67  TKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

[Close]
BLAST of CsaV3_1G010810 vs. TrEMBL
Match: tr|A0A0A0LRL1|A0A0A0LRL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.8e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 13  SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 72
           SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM
Sbjct: 7   SQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQPLVKIKM 66

Query: 73  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY
Sbjct: 67  TKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

[Close]
BLAST of CsaV3_1G010810 vs. TrEMBL
Match: tr|A0A1S3BEX3|A0A1S3BEX3_CUCME (uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.4e-46
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 18  MVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLG-EKEAGSCSQPLVKIKMTKRE 77
           MVFAGDDWGSFSSKHGRGCG N  A TSGGDPEKHRLLG +KEA SCSQPLVKIKMTKRE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGN--ATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRE 60

Query: 78  LEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 125
           LEVLVKKLEMQGL+LEQVIGRMMKGEEE+EIEHHRSWRPSLQSIPEDY
Sbjct: 61  LEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

[Close]
BLAST of CsaV3_1G010810 vs. TrEMBL
Match: tr|A0A2P4NBC1|A0A2P4NBC1_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77286 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 0 

Query: 14  QSSTMVFAGDDWGSFSS--KHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCS-----QP 73
           +SS+MV+AGDDWGS +S   H             G + E+HRLLG   + S S       
Sbjct: 8   ESSSMVWAGDDWGSLNSSKNHHDAMLAEADHDHKGNNVERHRLLGNMSSSSASAGNNHAR 67

Query: 74  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKG--EEEFEIEHHRSWRPSLQSIPEDY 125
            VKIK+TK+ELE LV    MQGLS+EQ++ R+ +   + ++E+E  RSW+P+LQSIPE +
Sbjct: 68  EVKIKITKKELEELV---NMQGLSMEQILARLAEAADDSKYELERQRSWKPALQSIPETW 124

[Close]
BLAST of CsaV3_1G010810 vs. TrEMBL
Match: tr|A0A2P4NBD4|A0A2P4NBD4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77286 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 0 

Query: 14  QSSTMVFAGDDWGSFSS--KHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCS-----QP 73
           +SS+MV+AGDDWGS +S   H             G + E+HRLLG   + S S       
Sbjct: 8   ESSSMVWAGDDWGSLNSSKNHHDAMLAEADHDHKGNNVERHRLLGNMSSSSASAGNNHAR 67

Query: 74  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKG--EEEFEIEHHRSWRPSLQSIPE 123
            VKIK+TK+ELE LV    MQGLS+EQ++ R+ +   + ++E+E  RSW+P+LQSIPE
Sbjct: 68  EVKIKITKKELEELV---NMQGLSMEQILARLAEAADDSKYELERQRSWKPALQSIPE 122

[Close]
BLAST of CsaV3_1G010810 vs. TrEMBL
Match: tr|A0A2C9U7S1|A0A2C9U7S1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G007700 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-13
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 0 

Query: 15  SSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEK-----EAGSCSQPLVK 74
           SS  V+AGDDWGS   +  R   ++ +        E+ +LLGE+      + SC +  VK
Sbjct: 9   SSVTVWAGDDWGSVGQEMKRSHKKHNTIL------ERQKLLGEETGRSSTSSSCPRE-VK 68

Query: 75  IKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEI----EHHRSWRPSLQSIPE 123
           IK+TK+ELE L+ ++E+QGLS+EQ +  ++K  ++FEI     HHRSW+P+LQSIPE
Sbjct: 69  IKITKKELEELMARVELQGLSMEQAVAGLIKSGDKFEIMEMDHHHRSWKPALQSIPE 118

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652689.14.3e-55100.00PREDICTED: uncharacterized protein LOC105435046 [Cucumis sativus] >KGN64525.1 hy... [more]
XP_008446374.18.1e-4691.67PREDICTED: uncharacterized protein LOC103489132 [Cucumis melo][more]
XP_022933211.14.3e-3980.00uncharacterized protein LOC111440057 [Cucurbita moschata][more]
XP_023001321.19.6e-3980.91uncharacterized protein LOC111495485 [Cucurbita maxima][more]
XP_023520212.12.1e-3879.09uncharacterized protein LOC111783515 [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_1G010810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRL1|A0A0A0LRL1_CUCSA2.8e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1[more]
tr|A0A1S3BEX3|A0A1S3BEX3_CUCME5.4e-4691.67uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=... [more]
tr|A0A2P4NBC1|A0A2P4NBC1_QUESU1.6e-1344.17Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77286 PE=4 SV=1[more]
tr|A0A2P4NBD4|A0A2P4NBD4_QUESU2.1e-1344.92Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77286 PE=4 SV=1[more]
tr|A0A2C9U7S1|A0A2C9U7S1_MANES3.5e-1343.59Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G007700 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010810.1CsaV3_1G010810.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..58
NoneNo IPR availablePANTHERPTHR33647FAMILY NOT NAMEDcoord: 14..123

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010810CSPI01G10740Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010810Cucsa.085870Cucumber (Gy14) v1cgycucB089
CsaV3_1G010810Cp4.1LG20g03500Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010810CsGy1G010640Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010810Carg07545Silver-seed gourdcarcucB1049
CsaV3_1G010810Cla019385Watermelon (97103) v1cucwmB013
CsaV3_1G010810MELO3C002460Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010810ClCG03G004770Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010810Lsi02G006040Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010810MELO3C002460.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010810Cla97C03G055920Watermelon (97103) v2cucwmbB030
CsaV3_1G010810Bhi08G001513Wax gourdcucwgoB037
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010810Cucumber (Gy14) v2cgybcucB247
CsaV3_1G010810Cucumber (Gy14) v1cgycucB018
CsaV3_1G010810Cucurbita maxima (Rimu)cmacucB0249
CsaV3_1G010810Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010810Cucurbita maxima (Rimu)cmacucB0775
CsaV3_1G010810Cucurbita maxima (Rimu)cmacucB1005
CsaV3_1G010810Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010810Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010810Cucurbita moschata (Rifu)cmocucB0760
CsaV3_1G010810Cucurbita moschata (Rifu)cmocucB0989
CsaV3_1G010810Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010810Cucurbita pepo (Zucchini)cpecucB0059
CsaV3_1G010810Cucurbita pepo (Zucchini)cpecucB0586
CsaV3_1G010810Wild cucumber (PI 183967)cpicucB310
CsaV3_1G010810Bottle gourd (USVL1VR-Ls)cuclsiB020
CsaV3_1G010810Melon (DHL92) v3.5.1cucmeB092
CsaV3_1G010810Melon (DHL92) v3.6.1cucmedB085
CsaV3_1G010810Watermelon (Charleston Gray)cucwcgB015
CsaV3_1G010810Watermelon (97103) v1cucwmB050
CsaV3_1G010810Watermelon (97103) v2cucwmbB001
CsaV3_1G010810Wax gourdcucwgoB026
CsaV3_1G010810Cucumber (Chinese Long) v3cuccucB044
CsaV3_1G010810Silver-seed gourdcarcucB0529
CsaV3_1G010810Silver-seed gourdcarcucB0672
CsaV3_1G010810Silver-seed gourdcarcucB0969