Cucsa.069240 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.069240
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00714 : 96955 .. 97455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGAGAGAGAGAGAAATTATAGATACTGATGCTAACCTGGCGCGGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGACAACGGGCGGTAGAAGGGTAGTGGCGGCAACGGAGATGAGGCCAGCTCAGATGCAGCCACCGCGTAAGGTGGCCGAGCAACCACCTTCGAAGACGAAAGAGAAACAGGGGGCAGTGGTGACTTCTGATCATTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGGAAATAGCTTTGCTTTTCTGATCTAAAAGTAAAGGGATGGATGCTTGTAATACATAAATAAACAAATTTAGGTAACTACGAGCCTGCAGTTGAGTATATATTTAACTGCACTATATATATATGTATGTATGTATGTATAAAGTATATGTATGAGTACTTAACTATAGCTTTGGTTATGTTGTTTCTTGGGCTCTTCAGTATTATAAAAAaT

mRNA sequence

ATGGGTAGGAGAGAGAGAGAAATTATAGATACTGATGCTAACCTGGCGCGGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGACAACGGGCGGTAGAAGGGTAGTGGCGGCAACGGAGATGAGGCCAGCTCAGATGCAGCCACCGCGTAAGGTGGCCGAGCAACCACCTTCGAAGACGAAAGAGAAACAGGGGGCAGTGGTGACTTCTGATCATTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGGAAATAGCTTTGCTTTTCTGATCTAAAAGTAAAGGGATGGATGCTTGTAATACATAAATAAACAAATTTAGGTAACTACGAGCCTGCAGTTGAGTATATATTTAACTGCACtatatatatatgtatgtatgtatgtataaagtatatgtatgAGTACTTAACTATAGCTTTGGTTATGTTGTTTCTTGGGCTCTTCAGTATTATAAAAAAT

Coding sequence (CDS)

ATGGGTAGGAGAGAGAGAGAAATTATAGATACTGATGCTAACCTGGCGCGGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGACAACGGGCGGTAGAAGGGTAGTGGCGGCAACGGAGATGAGGCCAGCTCAGATGCAGCCACCGCGTAAGGTGGCCGAGCAACCACCTTCGAAGACGAAAGAGAAACAGGGGGCAGTGGTGACTTCTGATCATTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGGAAATAG

Protein sequence

MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK*
Homology
[Close]
BLAST of Cucsa.069240 vs. TrEMBL
Match: A0A0A0KI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60
          MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 99
          QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK
Sbjct: 61 QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]
BLAST of Cucsa.069240 vs. TrEMBL
Match: A0A0A0KG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63
          REREI  +  +LA+IG EGF++ID++FGRAS+TG RRV A T  RPA  QPPRK AEQPP
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKT-ARPALPQPPRK-AEQPP 64

Query: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 97
             KEK  A VTSD +AK  GG VITTWR YAK
Sbjct: 65 RIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]
BLAST of Cucsa.069240 vs. NCBI nr
Match: gi|700192217|gb|KGN47421.1| (hypothetical protein Csa_6G318680 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60
          MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 99
          QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK
Sbjct: 61 QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]
BLAST of Cucsa.069240 vs. NCBI nr
Match: gi|700192218|gb|KGN47422.1| (hypothetical protein Csa_6G318690 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 8.2e-21
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63
          REREI  +  +LA+IG EGF++ID++FGRAS+TG RRV A T  RPA  QPPRK AEQPP
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKT-ARPALPQPPRK-AEQPP 64

Query: 64 SKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 97
             KEK  A VTSD +AK  GG VITTWR YAK
Sbjct: 65 RIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

The following BLAST results are available for this feature:
BLAST of Cucsa.069240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI19_CUCSA1.6e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1[more]
A0A0A0KG95_CUCSA5.7e-2164.52Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1[more]
BLAST of Cucsa.069240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192217|gb|KGN47421.1|2.3e-47100.00hypothetical protein Csa_6G318680 [Cucumis sativus][more]
gi|700192218|gb|KGN47422.1|8.2e-2164.52hypothetical protein Csa_6G318690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.069240.1Cucsa.069240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.069240Cla009286Watermelon (97103) v1cgywmB069
Cucsa.069240Csa6G318680Cucumber (Chinese Long) v2cgycuB064
Cucsa.069240MELO3C021310Melon (DHL92) v3.5.1cgymeB069
Cucsa.069240ClCG06G004950Watermelon (Charleston Gray)cgywcgB069
Cucsa.069240CSPI06G17450Wild cucumber (PI 183967)cgycpiB065
Cucsa.069240CmaCh17G003420Cucurbita maxima (Rimu)cgycmaB0111
Cucsa.069240CmoCh17G003290Cucurbita moschata (Rifu)cgycmoB0106
Cucsa.069240Lsi09G014510Bottle gourd (USVL1VR-Ls)cgylsiB068
Cucsa.069240Cp4.1LG12g02890Cucurbita pepo (Zucchini)cgycpeB0107
Cucsa.069240MELO3C021310.2Melon (DHL92) v3.6.1cgymedB068
Cucsa.069240CsaV3_6G023820Cucumber (Chinese Long) v3cgycucB067
Cucsa.069240Cla97C06G114440Watermelon (97103) v2cgywmbB067
Cucsa.069240Bhi12G001802Wax gourdcgywgoB073
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.069240Wax gourdcgywgoB074
Cucsa.069240Cucumber (Gy14) v1cgycgyB020
Cucsa.069240Cucurbita maxima (Rimu)cgycmaB0112
Cucsa.069240Cucurbita maxima (Rimu)cgycmaB0113
Cucsa.069240Cucurbita moschata (Rifu)cgycmoB0105
Cucsa.069240Cucurbita moschata (Rifu)cgycmoB0107
Cucsa.069240Wild cucumber (PI 183967)cgycpiB064
Cucsa.069240Cucumber (Chinese Long) v2cgycuB063
Cucsa.069240Melon (DHL92) v3.5.1cgymeB070
Cucsa.069240Watermelon (Charleston Gray)cgywcgB068
Cucsa.069240Watermelon (97103) v1cgywmB068
Cucsa.069240Cucurbita pepo (Zucchini)cgycpeB0108
Cucsa.069240Bottle gourd (USVL1VR-Ls)cgylsiB069
Cucsa.069240Melon (DHL92) v3.6.1cgymedB069
Cucsa.069240Silver-seed gourdcarcgyB0074
Cucsa.069240Silver-seed gourdcarcgyB0328
Cucsa.069240Silver-seed gourdcarcgyB0785
Cucsa.069240Cucumber (Chinese Long) v3cgycucB066
Cucsa.069240Watermelon (97103) v2cgywmbB066