Cp4.1LG12g02890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 1934883 .. 1935140 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTCGTGGTGATCTGGCAAAGATTGGAAGAGAAGGATTTGACCTAATTGACGAATACTTCGGTCGAGCACCGGCGACGAGAAGGGCGGCGGCGGCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTCTAAGGCGGAGAAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTAGCGGTGAACTGCAATCAGGTAGCCAAAGCCCGCGGCGGAATTGTGATAACCACTTGGCGTGCGGCAAAATGA

mRNA sequence

ATGGCTCCTCGTGGTGATCTGGCAAAGATTGGAAGAGAAGGATTTGACCTAATTGACGAATACTTCGGTCGAGCACCGGCGACGAGAAGGGCGGCGGCGGCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTCTAAGGCGGAGAAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTAGCGGTGAACTGCAATCAGGTAGCCAAAGCCCGCGGCGGAATTGTGATAACCACTTGGCGTGCGGCAAAATGA

Coding sequence (CDS)

ATGGCTCCTCGTGGTGATCTGGCAAAGATTGGAAGAGAAGGATTTGACCTAATTGACGAATACTTCGGTCGAGCACCGGCGACGAGAAGGGCGGCGGCGGCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTCTAAGGCGGAGAAACCTCCGAGGAAGATGAGAGAAAAGCTGCCTGTAGCGGTGAACTGCAATCAGGTAGCCAAAGCCCGCGGCGGAATTGTGATAACCACTTGGCGTGCGGCAAAATGA

Protein sequence

MAPRGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAAARPALPQAPSKAEKPPRKMREKLPVAVNCNQVAKARGGIVITTWRAAK
Homology
[Close]
BLAST of Cp4.1LG12g02890 vs. TrEMBL
Match: A0A0A0KG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-17
Identity = 53/79 (67.09%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 4  RGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAAARPALPQAPSKAEKPPRKMREKLPVA 63
          RGDLAKIGREGF +IDEYFGRA +T     AA  ARPALPQ P KAE+PPR  +EK   A
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVAKARGGIVITTWR 83
          V  +QVAK  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

[Close]
BLAST of Cp4.1LG12g02890 vs. TrEMBL
Match: A0A0A0KI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 6  DLAKIGREGFDLIDEYFGRAPATR-RAAAAAAAARPALPQAPSK-AEKPPRKMREKLPVA 65
          +LA+IG EGF LID++FGRA  T  R   AA   RPA  Q P K AE+PP K +EK    
Sbjct: 14 NLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGAV 73

Query: 66 VNCNQVAKARGGIVITTWRA 84
          V  + +AK RGGIVITTWR+
Sbjct: 74 VTSDHLAKTRGGIVITTWRS 93

[Close]
BLAST of Cp4.1LG12g02890 vs. NCBI nr
Match: gi|700192218|gb|KGN47422.1| (hypothetical protein Csa_6G318690 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 53/79 (67.09%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 4  RGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAAARPALPQAPSKAEKPPRKMREKLPVA 63
          RGDLAKIGREGF +IDEYFGRA +T     AA  ARPALPQ P KAE+PPR  +EK   A
Sbjct: 13 RGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVAA 72

Query: 64 VNCNQVAKARGGIVITTWR 83
          V  +QVAK  GG VITTWR
Sbjct: 73 VTSDQVAKHGGGTVITTWR 91

[Close]
BLAST of Cp4.1LG12g02890 vs. NCBI nr
Match: gi|700192217|gb|KGN47421.1| (hypothetical protein Csa_6G318680 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 9.5e-10
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 6  DLAKIGREGFDLIDEYFGRAPATR-RAAAAAAAARPALPQAPSK-AEKPPRKMREKLPVA 65
          +LA+IG EGF LID++FGRA  T  R   AA   RPA  Q P K AE+PP K +EK    
Sbjct: 14 NLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGAV 73

Query: 66 VNCNQVAKARGGIVITTWRA 84
          V  + +AK RGGIVITTWR+
Sbjct: 74 VTSDHLAKTRGGIVITTWRS 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG95_CUCSA1.5e-1767.09Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI19_CUCSA6.7e-1055.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1[more]
BLAST of Cp4.1LG12g02890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192218|gb|KGN47422.1|2.1e-1767.09hypothetical protein Csa_6G318690 [Cucumis sativus][more]
gi|700192217|gb|KGN47421.1|9.5e-1055.00hypothetical protein Csa_6G318680 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02890.1Cp4.1LG12g02890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02890Cucsa.069240Cucumber (Gy14) v1cgycpeB0107
Cp4.1LG12g02890CmaCh17G003420Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02890CmoCh17G003290Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02890Cla009287Watermelon (97103) v1cpewmB161
Cp4.1LG12g02890Csa6G318680Cucumber (Chinese Long) v2cpecuB151
Cp4.1LG12g02890MELO3C021310Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02890ClCG06G004950Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02890CSPI06G17450Wild cucumber (PI 183967)cpecpiB153
Cp4.1LG12g02890Lsi09G014510Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02890MELO3C021310.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02890CsaV3_6G023820Cucumber (Chinese Long) v3cpecucB0175
Cp4.1LG12g02890Bhi12G001802Wax gourdcpewgoB0181
Cp4.1LG12g02890CsGy6G016900Cucumber (Gy14) v2cgybcpeB731
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02890Silver-seed gourdcarcpeB0099
Cp4.1LG12g02890Silver-seed gourdcarcpeB0393
Cp4.1LG12g02890Silver-seed gourdcarcpeB0984
Cp4.1LG12g02890Cucumber (Chinese Long) v3cpecucB0149
Cp4.1LG12g02890Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g02890Wax gourdcpewgoB0188
Cp4.1LG12g02890Cucurbita pepo (Zucchini)cpecpeB109
Cp4.1LG12g02890Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG12g02890Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02890Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02890Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02890Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02890Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02890Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02890Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02890Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02890Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02890Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02890Watermelon (97103) v1cpewmB152
Cp4.1LG12g02890Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g02890Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g02890Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02890Melon (DHL92) v3.6.1cpemedB169
Cp4.1LG12g02890Melon (DHL92) v3.6.1cpemedB170