CSPI06G17450 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G17450
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 15661664 .. 15662267 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTACTATATAATGCACCAAAAACCAAACGAAGCTTCACAACCCATTCCAAAACAAATTCCTTTTTTTTCTTAATCTTCGGGAATTATGGGTAGGAGAGAGAGAGAAATTATAGATACTGATGCTAACCTGGCGCGGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGACAACGGGCGGTAGAAGGGTAGTGGCGGCAACGGAGATGAGGCCAGCTCAGATGCAGCCACCGCGTAAGGTGGCCGAGCAACCACCTTTGAAGACGAAAGAGAAACAGGGGGCAGTGGTGACTTCTGATCATTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGGAAATAGCTTTGCTTTTCTGATCTAAAAGTAAAGGGATGGATGCTTGTAATACATAAATAAACAAATTTAGGTAACTACGAGCCTGCAGTTGAGTATATATTTAACTGCACTATATATATATATATGTATGTATGTATAAAGTATATGTATGAGTACTTAACTATAGCTTTGGTTATGTTGTTTCTTGGGCTCTTCAGTATTATAAAAAATTATGCATGTTTTGAAC

mRNA sequence

ATGGGTAGGAGAGAGAGAGAAATTATAGATACTGATGCTAACCTGGCGCGGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGACAACGGGCGGTAGAAGGGTAGTGGCGGCAACGGAGATGAGGCCAGCTCAGATGCAGCCACCGCGTAAGGTGGCCGAGCAACCACCTTTGAAGACGAAAGAGAAACAGGGGGCAGTGGTGACTTCTGATCATTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGGAAATAG

Coding sequence (CDS)

ATGGGTAGGAGAGAGAGAGAAATTATAGATACTGATGCTAACCTGGCGCGGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGACAACGGGCGGTAGAAGGGTAGTGGCGGCAACGGAGATGAGGCCAGCTCAGATGCAGCCACCGCGTAAGGTGGCCGAGCAACCACCTTTGAAGACGAAAGAGAAACAGGGGGCAGTGGTGACTTCTGATCATTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCGTATGCAAAACGGAAATAG
Homology
[Close]
BLAST of CSPI06G17450 vs. TrEMBL
Match: A0A0A0KI19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.0e-46
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60
          MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QPPLKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 99
          QPP KTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK
Sbjct: 61 QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]
BLAST of CSPI06G17450 vs. TrEMBL
Match: A0A0A0KG95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63
          REREI  +  +LA+IG EGF++ID++FGRAS+TG RRV A T  RPA  QPPRK AEQPP
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKT-ARPALPQPPRK-AEQPP 64

Query: 64 LKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 97
             KEK  A VTSD +AK  GG VITTWR YAK
Sbjct: 65 RIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

[Close]
BLAST of CSPI06G17450 vs. NCBI nr
Match: gi|700192217|gb|KGN47421.1| (hypothetical protein Csa_6G318680 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 4.3e-46
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1 

Query: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60
          MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAE 60

Query: 61 QPPLKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 99
          QPP KTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK
Sbjct: 61 QPPSKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAKRK 98

[Close]
BLAST of CSPI06G17450 vs. NCBI nr
Match: gi|700192218|gb|KGN47422.1| (hypothetical protein Csa_6G318690 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 60/93 (64.52%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 4  REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63
          REREI  +  +LA+IG EGF++ID++FGRAS+TG RRV A T  RPA  QPPRK AEQPP
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKT-ARPALPQPPRK-AEQPP 64

Query: 64 LKTKEKQGAVVTSDHLAKTRGGIVITTWRSYAK 97
             KEK  A VTSD +AK  GG VITTWR YAK
Sbjct: 65 RIRKEKPVAAVTSDQVAKHGGGTVITTWRPYAK 95

The following BLAST results are available for this feature:
BLAST of CSPI06G17450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G17450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI19_CUCSA3.0e-4698.98Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318680 PE=4 SV=1[more]
A0A0A0KG95_CUCSA2.2e-2064.52Uncharacterized protein OS=Cucumis sativus GN=Csa_6G318690 PE=4 SV=1[more]
BLAST of CSPI06G17450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G17450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192217|gb|KGN47421.1|4.3e-4698.98hypothetical protein Csa_6G318680 [Cucumis sativus][more]
gi|700192218|gb|KGN47422.1|3.1e-2064.52hypothetical protein Csa_6G318690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17450.1CSPI06G17450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G17450Cla009286Watermelon (97103) v1cpiwmB557
CSPI06G17450Csa6G318680Cucumber (Chinese Long) v2cpicuB313
CSPI06G17450MELO3C021310Melon (DHL92) v3.5.1cpimeB435
CSPI06G17450ClCG06G004950Watermelon (Charleston Gray)cpiwcgB504
CSPI06G17450Lsi09G014510Bottle gourd (USVL1VR-Ls)cpilsiB405
CSPI06G17450MELO3C021310.2Melon (DHL92) v3.6.1cpimedB434
CSPI06G17450CsaV3_6G023820Cucumber (Chinese Long) v3cpicucB365
CSPI06G17450Cla97C06G114440Watermelon (97103) v2cpiwmbB496
CSPI06G17450Bhi12G001802Wax gourdcpiwgoB541
CSPI06G17450Cucsa.069240Cucumber (Gy14) v1cgycpiB065
CSPI06G17450CmaCh17G003420Cucurbita maxima (Rimu)cmacpiB382
CSPI06G17450CmoCh17G003290Cucurbita moschata (Rifu)cmocpiB371
CSPI06G17450Cp4.1LG12g02890Cucurbita pepo (Zucchini)cpecpiB153
CSPI06G17450CsGy6G016900Cucumber (Gy14) v2cgybcpiB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G17450Silver-seed gourdcarcpiB0083
CSPI06G17450Silver-seed gourdcarcpiB0311
CSPI06G17450Silver-seed gourdcarcpiB0739
CSPI06G17450Cucumber (Chinese Long) v3cpicucB344
CSPI06G17450Cucumber (Chinese Long) v3cpicucB355
CSPI06G17450Watermelon (97103) v2cpiwmbB490
CSPI06G17450Wax gourdcpiwgoB563
CSPI06G17450Wild cucumber (PI 183967)cpicpiB135
CSPI06G17450Cucumber (Gy14) v1cgycpiB390
CSPI06G17450Cucurbita maxima (Rimu)cmacpiB862
CSPI06G17450Cucurbita maxima (Rimu)cmacpiB924
CSPI06G17450Cucurbita moschata (Rifu)cmocpiB260
CSPI06G17450Cucurbita moschata (Rifu)cmocpiB373
CSPI06G17450Cucurbita moschata (Rifu)cmocpiB904
CSPI06G17450Cucumber (Chinese Long) v2cpicuB293
CSPI06G17450Melon (DHL92) v3.5.1cpimeB500
CSPI06G17450Watermelon (Charleston Gray)cpiwcgB499
CSPI06G17450Watermelon (97103) v1cpiwmB514
CSPI06G17450Cucurbita pepo (Zucchini)cpecpiB325
CSPI06G17450Cucurbita pepo (Zucchini)cpecpiB628
CSPI06G17450Bottle gourd (USVL1VR-Ls)cpilsiB471
CSPI06G17450Melon (DHL92) v3.6.1cpimedB486
CSPI06G17450Cucumber (Gy14) v2cgybcpiB149