Cucsa.065320 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.065320
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00696 : 82418 .. 82705 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAA

mRNA sequence

ATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAA

Coding sequence (CDS)

ATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAA

Protein sequence

ICKLSLIMKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSINGNKMNSSRSTEASLRVAPPSKSNPTQNK*
Homology
[Close]
BLAST of Cucsa.065320 vs. TrEMBL
Match: A0A0A0L1X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290180 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 8  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 67
          MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 68 GNKMNSSRSTEASLRVAPPSKSNPTQNK 96
          GNKMNSSRSTEASLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSSRSTEASLRVAPPSKSNPTQNK 88

[Close]
BLAST of Cucsa.065320 vs. TrEMBL
Match: A0A0D2U6P1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G249600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 16 ALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSINGNKMNSSR 75
          AL  + AL+L ++ IC P+ +H  R+TH      +    R LL S +S S N NK++ + 
Sbjct: 7  ALFAVFALILFNLLICSPLSLHCWRNTH----PRVRNQPRRLLGSFASISANLNKLSEAI 66

Query: 76 S--TEASLRVAPPSKSNPTQNK 96
              E SLR APPS SNP QNK
Sbjct: 67 QDPAETSLRKAPPSDSNPNQNK 84

[Close]
BLAST of Cucsa.065320 vs. NCBI nr
Match: gi|700198993|gb|KGN54151.1| (hypothetical protein Csa_4G290180 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 8  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 67
          MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 68 GNKMNSSRSTEASLRVAPPSKSNPTQNK 96
          GNKMNSSRSTEASLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSSRSTEASLRVAPPSKSNPTQNK 88

[Close]
BLAST of Cucsa.065320 vs. NCBI nr
Match: gi|763816621|gb|KJB83473.1| (hypothetical protein B456_013G249600 [Gossypium raimondii])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 1 

Query: 16 ALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSINGNKMNSSR 75
          AL  + AL+L ++ IC P+ +H  R+TH      +    R LL S +S S N NK++ + 
Sbjct: 7  ALFAVFALILFNLLICSPLSLHCWRNTH----PRVRNQPRRLLGSFASISANLNKLSEAI 66

Query: 76 S--TEASLRVAPPSKSNPTQNK 96
              E SLR APPS SNP QNK
Sbjct: 67 QDPAETSLRKAPPSDSNPNQNK 84

The following BLAST results are available for this feature:
BLAST of Cucsa.065320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1X3_CUCSA1.8e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290180 PE=4 SV=1[more]
A0A0D2U6P1_GOSRA3.0e-0642.68Uncharacterized protein OS=Gossypium raimondii GN=B456_013G249600 PE=4 SV=1[more]
BLAST of Cucsa.065320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198993|gb|KGN54151.1|2.6e-40100.00hypothetical protein Csa_4G290180 [Cucumis sativus][more]
gi|763816621|gb|KJB83473.1|4.2e-0642.68hypothetical protein B456_013G249600 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.065320.1Cucsa.065320.1mRNA