ClCG02G023480 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G023480
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 37848657 .. 37848935 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

mRNA sequence

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

Coding sequence (CDS)

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

Protein sequence

MKIPRVAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK
Homology
[Close]
BLAST of ClCG02G023480 vs. TrEMBL
Match: A0A0A0L1X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290180 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MKIPR-VAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTN 60
          MKIPR + ALVC    +LISI ICFPIRIHHHRS H +    LIESRRLLL SLSSFS N
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 61 GNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          GNKMN+      RS E SLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSS-----RSTEASLRVAPPSKSNPTQNK 88

[Close]
BLAST of ClCG02G023480 vs. TrEMBL
Match: A0A0D2MVS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G092400 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-08
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RRLL  SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRRLL-GSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

[Close]
BLAST of ClCG02G023480 vs. TrEMBL
Match: A0A0D2U6P1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G249600 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  IL ++LIC P+ +H  R+ H   P    + RRLL  S +S S N NK++  +
Sbjct: 7  ALFAVFALILFNLLICSPLSLHCWRNTH---PRVRNQPRRLL-GSFASISANLNKLSEAI 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D    AETSLR APPS SNP QNK
Sbjct: 67 QD---PAETSLRKAPPSDSNPNQNK 84

[Close]
BLAST of ClCG02G023480 vs. TrEMBL
Match: U5GNV9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21890g PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          A    F  I+I +L+   + +HH R    L      + RRLL+P  +S S N NK     
Sbjct: 7  AFFILFSLIVIHVLMSSLLCLHHERKVQLLDRN---QGRRLLVP-FASLSANVNKSTGAN 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          KD +++AETSLR APPS SNPTQNK
Sbjct: 67 KDPQKAAETSLRKAPPSFSNPTQNK 87

[Close]
BLAST of ClCG02G023480 vs. TrEMBL
Match: A0A0B2R2Y3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_029337 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.2e-06
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1 

Query: 1  MKIPRVAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNG 60
          MKI     L      +++  L+     + H +S   L  T L  SR LL  SL+SFST+ 
Sbjct: 1  MKIRSCRILGAVLALVVVHFLLFSLYSLSHEQS--FLGETSLSVSRELLSSSLASFSTSI 60

Query: 61 NKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          NK++   K  ++  E SLR APPS  NPTQNK
Sbjct: 61 NKISGSKKQKKKVVEPSLRKAPPSIPNPTQNK 90

[Close]
BLAST of ClCG02G023480 vs. NCBI nr
Match: gi|700198993|gb|KGN54151.1| (hypothetical protein Csa_4G290180 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-25
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1 

Query: 1  MKIPR-VAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTN 60
          MKIPR + ALVC    +LISI ICFPIRIHHHRS H +    LIESRRLLL SLSSFS N
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 61 GNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          GNKMN+      RS E SLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSS-----RSTEASLRVAPPSKSNPTQNK 88

[Close]
BLAST of ClCG02G023480 vs. NCBI nr
Match: gi|763755986|gb|KJB23317.1| (hypothetical protein B456_004G092400 [Gossypium raimondii])

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RRLL  SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRRLL-GSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

[Close]
BLAST of ClCG02G023480 vs. NCBI nr
Match: gi|763816621|gb|KJB83473.1| (hypothetical protein B456_013G249600 [Gossypium raimondii])

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-07
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  IL ++LIC P+ +H  R+ H   P    + RRLL  S +S S N NK++  +
Sbjct: 7  ALFAVFALILFNLLICSPLSLHCWRNTH---PRVRNQPRRLL-GSFASISANLNKLSEAI 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D    AETSLR APPS SNP QNK
Sbjct: 67 QD---PAETSLRKAPPSDSNPNQNK 84

[Close]
BLAST of ClCG02G023480 vs. NCBI nr
Match: gi|566164003|ref|XP_006386077.1| (hypothetical protein POPTR_0003s21890g [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          A    F  I+I +L+   + +HH R    L      + RRLL+P  +S S N NK     
Sbjct: 7  AFFILFSLIVIHVLMSSLLCLHHERKVQLLDRN---QGRRLLVP-FASLSANVNKSTGAN 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          KD +++AETSLR APPS SNPTQNK
Sbjct: 67 KDPQKAAETSLRKAPPSFSNPTQNK 87

The following BLAST results are available for this feature:
BLAST of ClCG02G023480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1X3_CUCSA1.2e-2570.97Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290180 PE=4 SV=1[more]
A0A0D2MVS6_GOSRA4.0e-0844.71Uncharacterized protein OS=Gossypium raimondii GN=B456_004G092400 PE=4 SV=1[more]
A0A0D2U6P1_GOSRA1.5e-0747.06Uncharacterized protein OS=Gossypium raimondii GN=B456_013G249600 PE=4 SV=1[more]
U5GNV9_POPTR2.6e-0744.71Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21890g PE=4 SV=1[more]
A0A0B2R2Y3_GLYSO8.2e-0640.22Uncharacterized protein OS=Glycine soja GN=glysoja_029337 PE=4 SV=1[more]
BLAST of ClCG02G023480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198993|gb|KGN54151.1|1.8e-2570.97hypothetical protein Csa_4G290180 [Cucumis sativus][more]
gi|763755986|gb|KJB23317.1|5.7e-0844.71hypothetical protein B456_004G092400 [Gossypium raimondii][more]
gi|763816621|gb|KJB83473.1|2.2e-0747.06hypothetical protein B456_013G249600 [Gossypium raimondii][more]
gi|566164003|ref|XP_006386077.1|3.7e-0744.71hypothetical protein POPTR_0003s21890g [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0052696 flavonoid glucuronidation
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0008194 UDP-glycosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G023480.1ClCG02G023480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G023480Csa4G290180Cucumber (Chinese Long) v2cuwcgB292
ClCG02G023480Cla97C02G049590Watermelon (97103) v2wcgwmbB138
ClCG02G023480CSPI04G13630Wild cucumber (PI 183967)cpiwcgB303
ClCG02G023480Cucsa.065320Cucumber (Gy14) v1cgywcgB062
ClCG02G023480Lsi10G010380Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G023480CsaV3_4G024010Cucumber (Chinese Long) v3cucwcgB305
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G023480Cucurbita pepo (Zucchini)cpewcgB255
ClCG02G023480Cucurbita pepo (Zucchini)cpewcgB320
ClCG02G023480Cucurbita pepo (Zucchini)cpewcgB644
ClCG02G023480Cucumber (Gy14) v2cgybwcgB272
ClCG02G023480Melon (DHL92) v3.6.1medwcgB195
ClCG02G023480Melon (DHL92) v3.6.1medwcgB370
ClCG02G023480Silver-seed gourdcarwcgB0453
ClCG02G023480Silver-seed gourdcarwcgB0503
ClCG02G023480Silver-seed gourdcarwcgB0900
ClCG02G023480Cucumber (Chinese Long) v3cucwcgB568
ClCG02G023480Wax gourdwcgwgoB283
ClCG02G023480Watermelon (Charleston Gray)wcgwcgB122
ClCG02G023480Cucurbita maxima (Rimu)cmawcgB052
ClCG02G023480Cucurbita maxima (Rimu)cmawcgB489
ClCG02G023480Cucurbita maxima (Rimu)cmawcgB541
ClCG02G023480Cucurbita moschata (Rifu)cmowcgB043
ClCG02G023480Cucurbita moschata (Rifu)cmowcgB313
ClCG02G023480Cucurbita moschata (Rifu)cmowcgB490
ClCG02G023480Cucurbita moschata (Rifu)cmowcgB538
ClCG02G023480Wild cucumber (PI 183967)cpiwcgB572
ClCG02G023480Cucumber (Chinese Long) v2cuwcgB544
ClCG02G023480Melon (DHL92) v3.5.1mewcgB200
ClCG02G023480Melon (DHL92) v3.5.1mewcgB376
ClCG02G023480Watermelon (97103) v1wcgwmB197