Cla97C02G049590 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G049590
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
Location	Cla97Chr02 : 36975098 .. 36975376 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

mRNA sequence

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

Coding sequence (CDS)

ATGAAAATTCCCCGAGTTGCAGCTCTGGTGTGTTTCTTTGGCTTCATTCTCATCTCCATTTTGATTTGTTTTCCCATCAGAATCCACCATCACAGATCTGCTCATCATCTTCTTCCCACAGGCCTAATTGAATCCAGAAGATTGCTGCTTCCTTCACTCTCCTCCTTCTCCACAAATGGGAACAAGATGAATGCTAAGATGAAAGATGGTAGAAGATCTGCAGAGACAAGTCTAAGAGTGGCGCCGCCCAGCAAATCGAATCCCACCCAAAACAAGTAA

Protein sequence

MKIPRVAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK

Homology

[Close]

BLAST of Cla97C02G049590 vs. NCBI nr
Match: KGN54151.1 (hypothetical protein Csa_4G290180 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-23
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MKIPR-VAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTN 60
          MKIPR + ALVC    +LISI ICFPIRIHHHRS H +    LIESRRLLL SLSSFS N
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 61 GNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          GNKMN+      RS E SLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSS-----RSTEASLRVAPPSKSNPTQNK 88

[Close]

BLAST of Cla97C02G049590 vs. NCBI nr
Match: KJB23317.1 (hypothetical protein B456_004G092400 [Gossypium raimondii])

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRR-LLGSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

[Close]

BLAST of Cla97C02G049590 vs. NCBI nr
Match: OAY30232.1 (hypothetical protein MANES_14G015100 [Manihot esculenta])

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 9  LVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKMK 68
          LV  F  ILI IL+   + +HH R  H    +      R LL S+S  S+N   +N  +K
Sbjct: 7  LVVLFALILIHILMSSLLSLHHEREIH----SDSRNQPRRLLVSVSLSSSNEANLNGAIK 66

Query: 69 DGRRSAETSLRVAPPSKSNPTQNK 93
          D +++ ETSLR APPS SNPTQNK
Sbjct: 67 DPQKALETSLRKAPPSLSNPTQNK 86

[Close]

BLAST of Cla97C02G049590 vs. NCBI nr
Match: XP_021278160.1 (uncharacterized protein LOC110412063 [Herrania umbratica])

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  +L  +LIC P+ +H   + H    + +    R LL S +S S N NK++  +
Sbjct: 7  ALFAAFALLLFHLLICSPLSLHCWSNTH----SRVRNQPRRLLGSFASISANLNKLSRAI 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQN 92
          +D +++ ETSLR APPS SNPTQN
Sbjct: 67 QDPKKAVETSLRKAPPSASNPTQN 86

[Close]

BLAST of Cla97C02G049590 vs. NCBI nr
Match: KJB83473.1 (hypothetical protein B456_013G249600 [Gossypium raimondii])

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-05
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  IL ++LIC P+ +H  R+ H   P    + RR LL S +S S N NK++  +
Sbjct: 7  ALFAVFALILFNLLICSPLSLHCWRNTH---PRVRNQPRR-LLGSFASISANLNKLSEAI 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D    AETSLR APPS SNP QNK
Sbjct: 67 QD---PAETSLRKAPPSDSNPNQNK 84

[Close]

BLAST of Cla97C02G049590 vs. TrEMBL
Match: tr|A0A0A0L1X3|A0A0A0L1X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290180 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MKIPR-VAALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTN 60
          MKIPR + ALVC    +LISI ICFPIRIHHHRS H +    LIESRRLLL SLSSFS N
Sbjct: 1  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 61 GNKMNAKMKDGRRSAETSLRVAPPSKSNPTQNK 93
          GNKMN+      RS E SLRVAPPSKSNPTQNK
Sbjct: 61 GNKMNSS-----RSTEASLRVAPPSKSNPTQNK 88

[Close]

BLAST of Cla97C02G049590 vs. TrEMBL
Match: tr|A0A0D2MVS6|A0A0D2MVS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G092400 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  I+  +LIC P+  H  +  H  +P    + RR LL SL+S S N NK++  +
Sbjct: 10 ALFLVFALIVSHLLICSPLSFHCWKDTH--IPRVKYQPRR-LLGSLASVSANLNKLSGAI 69

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D  ++  TSLR APPS SNPTQNK
Sbjct: 70 QDPNKAVGTSLRKAPPSASNPTQNK 91

[Close]

BLAST of Cla97C02G049590 vs. TrEMBL
Match: tr|A0A2C9UHU7|A0A2C9UHU7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G015100 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-05
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 9  LVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKMK 68
          LV  F  ILI IL+   + +HH R  H    +      R LL S+S  S+N   +N  +K
Sbjct: 7  LVVLFALILIHILMSSLLSLHHEREIH----SDSRNQPRRLLVSVSLSSSNEANLNGAIK 66

Query: 69 DGRRSAETSLRVAPPSKSNPTQNK 93
          D +++ ETSLR APPS SNPTQNK
Sbjct: 67 DPQKALETSLRKAPPSLSNPTQNK 86

[Close]

BLAST of Cla97C02G049590 vs. TrEMBL
Match: tr|A0A0D2U6P1|A0A0D2U6P1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G249600 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          AL   F  IL ++LIC P+ +H  R+ H   P    + RR LL S +S S N NK++  +
Sbjct: 7  ALFAVFALILFNLLICSPLSLHCWRNTH---PRVRNQPRR-LLGSFASISANLNKLSEAI 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D    AETSLR APPS SNP QNK
Sbjct: 67 QD---PAETSLRKAPPSDSNPNQNK 84

[Close]

BLAST of Cla97C02G049590 vs. TrEMBL
Match: tr|A0A2K1R7A7|A0A2K1R7A7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T084100v3 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.8e-05
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 8  ALVCFFGFILISILICFPIRIHHHRSAHHLLPTGLIESRRLLLPSLSSFSTNGNKMNAKM 67
          A +  F  I+I +L+   + +HH R    L      + RRLL+P  +S S N NK     
Sbjct: 7  AFLILFSLIVIHVLMSSLLCLHHERKVQLL---DRNQGRRLLVP-FASLSANVNKSTGAN 66

Query: 68 KDGRRSAETSLRVAPPSKSNPTQNK 93
          +D R++AETSLR APPS SNPTQNK
Sbjct: 67 RDPRKAAETSLRKAPPSFSNPTQNK 87

The following BLAST results are available for this feature:

BLAST of Cla97C02G049590 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54151.1	7.1e-23	70.97	hypothetical protein Csa_4G290180 [Cucumis sativus]	[more]
KJB23317.1	2.3e-05	44.71	hypothetical protein B456_004G092400 [Gossypium raimondii]	[more]
OAY30232.1	3.9e-05	45.24	hypothetical protein MANES_14G015100 [Manihot esculenta]	[more]
XP_021278160.1	3.9e-05	41.67	uncharacterized protein LOC110412063 [Herrania umbratica]	[more]
KJB83473.1	6.7e-05	47.06	hypothetical protein B456_013G249600 [Gossypium raimondii]	[more]

BLAST of Cla97C02G049590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1X3\|A0A0A0L1X3_CUCSA	4.7e-23	70.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290180 PE=4 SV=1	[more]
tr\|A0A0D2MVS6\|A0A0D2MVS6_GOSRA	1.5e-05	44.71	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G092400 PE=4 ...	[more]
tr\|A0A2C9UHU7\|A0A2C9UHU7_MANES	2.6e-05	45.24	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G015100 PE=4 SV=...	[more]
tr\|A0A0D2U6P1\|A0A0D2U6P1_GOSRA	4.4e-05	47.06	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G249600 PE=4 ...	[more]
tr\|A0A2K1R7A7\|A0A2K1R7A7_POPTR	5.8e-05	44.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T084100v3 PE=4 S...	[more]

BLAST of Cla97C02G049590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G049590 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G049590.1	Cla97C02G049590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G049590	Csa4G290180	Cucumber (Chinese Long) v2	cuwmbB287
Cla97C02G049590	ClCG02G023480	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G049590	CSPI04G13630	Wild cucumber (PI 183967)	cpiwmbB294
Cla97C02G049590	Cucsa.065320	Cucumber (Gy14) v1	cgywmbB059
Cla97C02G049590	CsaV3_4G024010	Cucumber (Chinese Long) v3	cucwmbB293

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G049590	Wild cucumber (PI 183967)	cpiwmbB551
Cla97C02G049590	Cucumber (Chinese Long) v3	cucwmbB027
Cla97C02G049590	Cucumber (Chinese Long) v3	cucwmbB547
Cla97C02G049590	Cucumber (Chinese Long) v2	cuwmbB528
Cla97C02G049590	Bottle gourd (USVL1VR-Ls)	lsiwmbB052
Cla97C02G049590	Melon (DHL92) v3.6.1	medwmbB169
Cla97C02G049590	Melon (DHL92) v3.6.1	medwmbB368
Cla97C02G049590	Melon (DHL92) v3.5.1	mewmbB183
Cla97C02G049590	Melon (DHL92) v3.5.1	mewmbB377
Cla97C02G049590	Watermelon (Charleston Gray)	wcgwmbB181
Cla97C02G049590	Watermelon (97103) v1	wmwmbB316
Cla97C02G049590	Wax gourd	wgowmbB353
Cla97C02G049590	Wax gourd	wgowmbB567
Cla97C02G049590	Silver-seed gourd	carwmbB0472
Cla97C02G049590	Silver-seed gourd	carwmbB0489
Cla97C02G049590	Silver-seed gourd	carwmbB0543
Cla97C02G049590	Silver-seed gourd	carwmbB0966
Cla97C02G049590	Cucumber (Gy14) v2	cgybwmbB029
Cla97C02G049590	Cucumber (Gy14) v2	cgybwmbB273
Cla97C02G049590	Cucurbita maxima (Rimu)	cmawmbB059
Cla97C02G049590	Cucurbita maxima (Rimu)	cmawmbB577
Cla97C02G049590	Cucurbita maxima (Rimu)	cmawmbB629
Cla97C02G049590	Cucurbita moschata (Rifu)	cmowmbB045
Cla97C02G049590	Cucurbita moschata (Rifu)	cmowmbB557
Cla97C02G049590	Cucurbita moschata (Rifu)	cmowmbB602
Cla97C02G049590	Cucurbita moschata (Rifu)	cmowmbB883
Cla97C02G049590	Wild cucumber (PI 183967)	cpiwmbB028