CSPI04G13630 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G13630
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 11630360 .. 11631107 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACTACACGTTTGTTTTCCAATGACAAAACAAACAAACAAACACACTTGCCTGCATTTTCTGCATTCCAACCCACCAAACACAAAACCCTCAACTTCCCCAAATGCTCATTTTTTACTCCAAATCAGATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAATGGATTACTAAATTTGTTTAATTTTTGTATACCCCCTTTTTCTTTTGTACAAACATCTTAGAGTGCCAGTGAAAGAGAAAAGATTGAACCAACCAAAACCAATCTCTCTTTTCTCTTTCCAAATTTTTGCAGTTTCTTTCTTTGTTTTTTATTATAGATTACTGATAACTAAGTTAGATGGGGAGGTTTTAGAACTATTGGATTCCTATGTTTCTTGCATTCACTTCTTTTTATTTCACTGACATGATGAGTTAGGAATTGCAAAAAGTCCAGATTTGATGTTATTGAACAGTACTTTGGATTTATAAGAAATTACACAGCTTCTTAG

mRNA sequence

ATGTTAACTACACGTTTGTTTTCCAATGACAAAACAAACAAACAAACACACTTGCCTGCATTTTCTGCATTCCAACCCACCAAACACAAAACCCTCAACTTCCCCAAATGCTCATTTTTTACTCCAAATCAGATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAA

Coding sequence (CDS)

ATGTTAACTACACGTTTGTTTTCCAATGACAAAACAAACAAACAAACACACTTGCCTGCATTTTCTGCATTCCAACCCACCAAACACAAAACCCTCAACTTCCCCAAATGCTCATTTTTTACTCCAAATCAGATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAA

Homology

[Close]

BLAST of CSPI04G13630 vs. TrEMBL
Match: A0A0A0L1X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290180 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-37
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 52  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 111
           MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN
Sbjct: 1   MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 112 GNKMNSSRSTEASLRVAPPSKSNPTQNK 140
           GNKMNSSRSTEASLRVAPPSKSNPTQNK
Sbjct: 61  GNKMNSSRSTEASLRVAPPSKSNPTQNK 88

[Close]

BLAST of CSPI04G13630 vs. NCBI nr
Match: gi|700198993|gb|KGN54151.1| (hypothetical protein Csa_4G290180 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 5.2e-37
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 52  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 111
           MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN
Sbjct: 1   MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 112 GNKMNSSRSTEASLRVAPPSKSNPTQNK 140
           GNKMNSSRSTEASLRVAPPSKSNPTQNK
Sbjct: 61  GNKMNSSRSTEASLRVAPPSKSNPTQNK 88

The following BLAST results are available for this feature:

BLAST of CSPI04G13630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G13630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1X3_CUCSA	3.6e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290180 PE=4 SV=1	[more]

BLAST of CSPI04G13630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G13630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198993\|gb\|KGN54151.1\|	5.2e-37	100.00	hypothetical protein Csa_4G290180 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G13630.1	CSPI04G13630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G13630	Csa4G290180	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G13630	ClCG02G023480	Watermelon (Charleston Gray)	cpiwcgB303
CSPI04G13630	Lsi10G010380	Bottle gourd (USVL1VR-Ls)	cpilsiB245
CSPI04G13630	CsaV3_4G024010	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G13630	Cla97C02G049590	Watermelon (97103) v2	cpiwmbB294
CSPI04G13630	Cucsa.065320	Cucumber (Gy14) v1	cgycpiB055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G13630	Melon (DHL92) v3.6.1	cpimedB283
CSPI04G13630	Cucumber (Gy14) v2	cgybcpiB170
CSPI04G13630	Silver-seed gourd	carcpiB0559
CSPI04G13630	Silver-seed gourd	carcpiB0958
CSPI04G13630	Wax gourd	cpiwgoB394
CSPI04G13630	Cucurbita maxima (Rimu)	cmacpiB554
CSPI04G13630	Cucurbita maxima (Rimu)	cmacpiB612
CSPI04G13630	Cucurbita moschata (Rifu)	cmocpiB543
CSPI04G13630	Cucurbita moschata (Rifu)	cmocpiB603
CSPI04G13630	Melon (DHL92) v3.5.1	cpimeB289
CSPI04G13630	Watermelon (97103) v1	cpiwmB353
CSPI04G13630	Cucurbita pepo (Zucchini)	cpecpiB282
CSPI04G13630	Cucurbita pepo (Zucchini)	cpecpiB730