Cucsa.062030 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.062030
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRibosomal protein L37
Locationscaffold00653 : 89751 .. 91135 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTTCCTCCTTCTCTTTGGACGGTACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGTAATCACTCTCTTCCCTTTCTACATCATTGCGCCTTGAATTCAAAATTTGAGTGCGCTAATCGTCTTGTTTGTTGATCGGTAATTAGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGTCGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATGTAAGTTCGCTTAATCACTTTGTATTTTGAGTTGTTTCATCATTGTACGATTAAATCCTTGTAACTCTAGATCTCCCAGAATCGACCCAGATAGTAGTAGATTCGTTCTGAGTGTCCTAATCTGTTTAAATGTATTTTTTTTTTTTTACTTTTGGGTCGTCAATTTTGGTTTAGTTTTTCGTTTCTCTTATGGTGGTTTTTGGATTTAGATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATATTTGCGCCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTAGAAGTTTAATTTGTGTAATTCTTGCAGTTTTACTTATTAATTAACGTGATTATTTTATTTTTTGTGGGATTTTTTTAATTTTAAGTTCGTTCGGTTCTGTGATTAGGTACTGAAGCAGCGCCAAGGAGCAAAGGAGCCTCATCATCAGCCTAAGACATTGAAGGTTAATTGTGGCACAACTTGGTACCTTATATAGCTTCTAGGAGGATTTTATCATTTTTGGGACTAGAGTTTATAAGAATTTTGTTTGATGATGTTATTGCCTGCAATACTGAAGCTTGTTTTTATTTCTTACTCTTTTGTTTATGGAATTTCTGATAATTGTTTTCAGACCACTTTCACCTTTGGTTAATCTATGTCTTGAGTTATATACTTCTAAGTTCCAACCATGTTAGAAGGTATTGCTGGTAGATATTGTTACTCTGAATGCCAGGGTGGAAACTATTAGTGAGAAATTTGCGTGTTGAGATCATGCGTTGATGTTTGAGTTGTTTCTTATTCTTGGTCGCAGCCTCATTCATATTTGGGTTGATAATCCAGATTAAATAGAGATATTGTGCTTCACTTGTCATTAGGTTATGGTATAATTGCCATATAACTAAGTGGGAACCTGTGATTAAGAAAATATGGTTCAACATGAAAAACTACTAGAAAGAGCTGACATCTTTTGGGATCATGGTATCAGAAAATTACAAAGAAGGCTTTAGGAGTAAGGAACTAAATAAAGAATGTTCAAACGATTGAAATTCCAAACACTATCTAAATCCTTATCAAAGCCTTCT

mRNA sequence

TACTTCCTCCTTCTCTTTGGACGGTACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGTCGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATATTTGCGCCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTGAAGCAGCGCCAAGGAGCAAAGGAGCCTCATCATCAGCCTAAGACATTGAAGGTTAATTGTGGCACAACTTGGTACCTTATATAGCTTCTAGGAGGATTTTATCATTTTTGGGACTAGAGTTTATAAGAATTTTGTTTGATGATGTTATTGCCTGCAATACTGAAGCTTGTTTTTATTTCTTACTCTTTTGTTTATGGAATTTCTGATAATTGTTTTCAGACCACTTTCACCTTTGGTTAATCTATGTCTTGAGTTATATACTTCTAAGTTCCAACCATGTTAGAAGGTATTGCTGGTAGATATTGTTACTCTGAATGCCAGGGTGGAAACTATTAGTGAGAAATTTGCGTGTTGAGATCATGCGTTGATGTTTGAGTTGTTTCTTATTCTTGGTCGCAGCCTCATTCATATTTGGGTTGATAATCCAGATTAAATAGAGATATTGTGCTTCACTTGTCATTAGGTTATGGTATAATTGCCATATAACTAAGTGGGAACCTGTGATTAAGAAAATATGGTTCAACATGAAAAACTACTAGAAAGAGCTGACATCTTTTGGGATCATGGTATCAGAAAATTACAAAGAAGGCTTTAGGAGTAAGGAACTAAATAAAGAATGTTCAAACGATTGAAATTCCAAACACTATCTAAATCCTTATCAAAGCCTTCT

Coding sequence (CDS)

ATGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGTCGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATATTTGCGCCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTGAAGCAGCGCCAAGGAGCAAAGGAGCCTCATCATCAGCCTAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA*
Homology
[Close]
BLAST of Cucsa.062030 vs. Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-46
Identity = 86/95 (90.53%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLR+VPRRFK+GFREGTEA PRSK ++SSA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Cucsa.062030 vs. Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 9.3e-46
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLR+VPRRFK+GFREGTEA PR+KG +SSA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Cucsa.062030 vs. Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 7.9e-45
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLR+VPRRFK+ FREGT+A PR+K A+SS+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Cucsa.062030 vs. Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-32
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS C+ C +PAA+ R+YNWSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGAS 93
          TGRM++L+ V RRF++GFREGT+A P+   AS
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]
BLAST of Cucsa.062030 vs. Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL37A PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 5.0e-31
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGT SFGKR NK+HTLC RCGRRSFH+QK  CS+C +PAA+ R+YNW  KA RR TTG
Sbjct: 1  MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGT 83
          TGRMRYL+HV RRFK+GF+ G+
Sbjct: 61 TGRMRYLKHVSRRFKNGFQTGS 82

[Close]
BLAST of Cucsa.062030 vs. TrEMBL
Match: A0A0A0L819_CUCSA (Ribosomal protein L37 OS=Cucumis sativus GN=Csa_3G483790 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Cucsa.062030 vs. TrEMBL
Match: A0A0A0K941_CUCSA (Ribosomal protein L37 OS=Cucumis sativus GN=Csa_7G446890 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-46
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPR+KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cucsa.062030 vs. TrEMBL
Match: A0A067F063_CITSI (Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-46
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGT+AAPR KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cucsa.062030 vs. TrEMBL
Match: V4SSW5_9ROSI (Ribosomal protein L37 OS=Citrus clementina GN=CICLE_v10026841mg PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-46
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGT+AAPR KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cucsa.062030 vs. TrEMBL
Match: A0A0D2UL25_GOSRA (Ribosomal protein L37 (Fragment) OS=Gossypium raimondii GN=B456_009G134200 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-46
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
           MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 28  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 87

Query: 61  TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
           TGRMRYLRHVPRRFK+GFREGTEAAPR K A++SA
Sbjct: 88  TGRMRYLRHVPRRFKTGFREGTEAAPRKKVAAASA 122

[Close]
BLAST of Cucsa.062030 vs. TAIR10
Match: AT3G16080.1 (AT3G16080.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-47
Identity = 86/95 (90.53%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLR+VPRRFK+GFREGTEA PRSK ++SSA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Cucsa.062030 vs. TAIR10
Match: AT1G52300.1 (AT1G52300.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-47
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLR+VPRRFK+GFREGTEA PR+KG +SSA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Cucsa.062030 vs. TAIR10
Match: AT1G15250.1 (AT1G15250.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 180.6 bits (457), Expect = 4.5e-46
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLR+VPRRFK+ FREGT+A PR+K A+SS+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Cucsa.062030 vs. NCBI nr
Match: gi|449465274|ref|XP_004150353.1| (PREDICTED: 60S ribosomal protein L37-3 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Cucsa.062030 vs. NCBI nr
Match: gi|1021561234|ref|XP_016171857.1| (PREDICTED: 60S ribosomal protein L37-3 [Arachis ipaensis])

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPR KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAASA 95

[Close]
BLAST of Cucsa.062030 vs. NCBI nr
Match: gi|449448036|ref|XP_004141772.1| (PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 2.5e-46
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGTEAAPR+KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cucsa.062030 vs. NCBI nr
Match: gi|567868697|ref|XP_006426971.1| (hypothetical protein CICLE_v10026841mg [Citrus clementina])

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-46
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGT+AAPR KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cucsa.062030 vs. NCBI nr
Match: gi|1009112311|ref|XP_015867587.1| (PREDICTED: 60S ribosomal protein L37-3 [Ziziphus jujuba])

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-46
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+AC FPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 96
          TGRMRYLRHVPRRFKSGFREGT+AAPR KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

The following BLAST results are available for this feature:
BLAST of Cucsa.062030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL373_ARATH1.9e-4690.5360S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1[more]
RL372_ARATH9.3e-4689.4760S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2[more]
RL371_ARATH7.9e-4587.3760S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1[more]
RL371_DROME3.4e-3268.48Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=1 S... [more]
RL37A_YEAST5.0e-3171.9560S ribosomal protein L37-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
BLAST of Cucsa.062030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L819_CUCSA1.4e-48100.00Ribosomal protein L37 OS=Cucumis sativus GN=Csa_3G483790 PE=3 SV=1[more]
A0A0A0K941_CUCSA1.7e-4694.74Ribosomal protein L37 OS=Cucumis sativus GN=Csa_7G446890 PE=3 SV=1[more]
A0A067F063_CITSI2.2e-4693.68Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1[more]
V4SSW5_9ROSI2.2e-4693.68Ribosomal protein L37 OS=Citrus clementina GN=CICLE_v10026841mg PE=3 SV=1[more]
A0A0D2UL25_GOSRA5.0e-4694.74Ribosomal protein L37 (Fragment) OS=Gossypium raimondii GN=B456_009G134200 PE=3 ... [more]
BLAST of Cucsa.062030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16080.11.1e-4790.53 Zinc-binding ribosomal protein family protein[more]
AT1G52300.15.3e-4789.47 Zinc-binding ribosomal protein family protein[more]
AT1G15250.14.5e-4687.37 Zinc-binding ribosomal protein family protein[more]
BLAST of Cucsa.062030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465274|ref|XP_004150353.1|2.0e-48100.00PREDICTED: 60S ribosomal protein L37-3 [Cucumis sativus][more]
gi|1021561234|ref|XP_016171857.1|1.4e-4695.79PREDICTED: 60S ribosomal protein L37-3 [Arachis ipaensis][more]
gi|449448036|ref|XP_004141772.1|2.5e-4694.74PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus][more]
gi|567868697|ref|XP_006426971.1|3.2e-4693.68hypothetical protein CICLE_v10026841mg [Citrus clementina][more]
gi|1009112311|ref|XP_015867587.1|4.2e-4693.68PREDICTED: 60S ribosomal protein L37-3 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001569Ribosomal_L37e
IPR011331Ribosomal_L37ae/L37e
IPR011332Ribosomal_zn-bd
IPR018267Ribosomal_L37e_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.062030.1Cucsa.062030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001569Ribosomal protein L37ePRODOMPD005132coord: 9..49
score: 6.0
IPR001569Ribosomal protein L37eHAMAPMF_00547Ribosomal_L37ecoord: 2..53
score: 16
IPR001569Ribosomal protein L37ePFAMPF01907Ribosomal_L37ecoord: 3..53
score: 8.6
IPR011331Ribosomal protein L37ae/L37eGENE3DG3DSA:2.20.25.30coord: 1..55
score: 2.2
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 1..55
score: 1.56
IPR018267Ribosomal protein L37e, conserved sitePROSITEPS01077RIBOSOMAL_L37Ecoord: 4..23
scor
NoneNo IPR availablePANTHERPTHR1076860S RIBOSOMAL PROTEIN L37coord: 1..94
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.062030Cla012674Watermelon (97103) v1cgywmB054
Cucsa.062030Cla015443Watermelon (97103) v1cgywmB053
Cucsa.062030Csa3G483790Cucumber (Chinese Long) v2cgycuB048
Cucsa.062030Csa7G446890Cucumber (Chinese Long) v2cgycuB049
Cucsa.062030MELO3C012967Melon (DHL92) v3.5.1cgymeB052
Cucsa.062030ClCG07G013110Watermelon (Charleston Gray)cgywcgB054
Cucsa.062030ClCG09G002030Watermelon (Charleston Gray)cgywcgB053
Cucsa.062030CSPI07G21410Wild cucumber (PI 183967)cgycpiB049
Cucsa.062030CmaCh14G013080Cucurbita maxima (Rimu)cgycmaB0089
Cucsa.062030CmaCh01G001100Cucurbita maxima (Rimu)cgycmaB0090
Cucsa.062030CmaCh08G006960Cucurbita maxima (Rimu)cgycmaB0091
Cucsa.062030CmoCh08G006610Cucurbita moschata (Rifu)cgycmoB0086
Cucsa.062030CmoCh01G001150Cucurbita moschata (Rifu)cgycmoB0085
Cucsa.062030CmoCh14G013430Cucurbita moschata (Rifu)cgycmoB0084
Cucsa.062030Cp4.1LG02g14630Cucurbita pepo (Zucchini)cgycpeB0085
Cucsa.062030Cp4.1LG03g13980Cucurbita pepo (Zucchini)cgycpeB0086
Cucsa.062030MELO3C030793.2Melon (DHL92) v3.6.1cgymedB051
Cucsa.062030CsaV3_7G033310Cucumber (Chinese Long) v3cgycucB051
Cucsa.062030Cla97C09G164160Watermelon (97103) v2cgywmbB053
Cucsa.062030Bhi09G000130Wax gourdcgywgoB055
Cucsa.062030Bhi01G002643Wax gourdcgywgoB054
Cucsa.062030Carg04261Silver-seed gourdcarcgyB0234
Cucsa.062030Carg06480Silver-seed gourdcarcgyB0140
Cucsa.062030Carg18798Silver-seed gourdcarcgyB0836
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.062030Cucsa.359150Cucumber (Gy14) v1cgycgyB013
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.062030Wild cucumber (PI 183967)cgycpiB048
Cucsa.062030Bottle gourd (USVL1VR-Ls)cgylsiB052
Cucsa.062030Cucumber (Chinese Long) v3cgycucB050
Cucsa.062030Watermelon (97103) v2cgywmbB052