Carg06480 (gene) Silver-seed gourd

Overview
NameCarg06480
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein L37
LocationCucurbita_argyrosperma_scaffold_051 : 763700 .. 766453 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCGTCGAATCCGACTAAATGGTAATGGCGAACTTACTTTTGTGAACTCAATCTCTTTTCTTTCTATATGACTGTTGTTGAATTCGGAATTTTAGTGCGTTAATCGATTTGTTTGTTGATCGGTAATTAGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGATGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCTCTGCCTGTGCATTTCCAGCCGCCCGTAAGCGTACATGTAAGTTCGCTTAATCAATTTGTATTTGTTTTTGGTTGTTTCATCATTGCGCAATTAAACCTCTTTTATATACTGAGCTTAACTTATTGAATCGATTGGAAGTGATAATCATAGATTCATCATTATCGACCCAGATAGCAGTAGATTCGTTATGCGTACCCTAATCTGTTTGAGTGAATATCATTTACTCTTGGGTCTTCAATTTTGGCCCAGTTGTTCCTTTTTCTTATGCGGGTTTTGGATTTAGATAACTGGAGCGTAAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGTCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTTCTATTCTAAGTTGTATTTTTCTTGCATTTTCTGCTTATCAACTGATTTTTGGGGCATTTTGTGATTTTAGTTACCTTTGGATTTGGTGATTAGGTACTCAAGCAGCGCCAAGGAGCAAAGGAGCAGCCGCATCAGCATAAGACATTAAAGGTTACTTGTGGCACAACTTGGTACCATATTTATAGCTTCTAGGAGAAGTTTGTCATTTTTGGGACCAGAATCTATAAGAATTTTGTTTTATGATGTTAACACCTTCAATACTGAAACTTAATTTTATTTCTTACTGTATTGTTTATGGAAATTTTTATTGTTGTTTTGAGACCAGTTTCACCTTCGGTTAATCCATGTCTTGAGCTATTTACATCTAATCATTGTTGGAGTTTTTGCTGGTAGATATTGTTACCCTGAAGCCAGGGTAGAATCAGTTAGTAAGAAATTTGAGTCTTAAATCATGTGTTAATGAGTTGTTCCTCACTCATATATATATATATGATTAGGGTTGATAATCCAGAATAACTCAGCTAGTTGCTATTCTTTTTTTGGAATTGTTAGTGGTAGGGGTATGACTTGGTTATTGTTACAATTACTACATAACTAAGAAACCACTCGTTAGGAGATGTAGAGGCCGACTCAAGGAAATGGGCCATTGTAAAGCATCAAAACTAAGGGAAAAGATTGTCATCTTTTGGGATCGCAGGAAGAGAAAATTACTATAGGCTTTCGAAACAAGGAAATGAAGAAAGATGATGTTGAAGTGCATATAAGTTCAAACACTCTTATCTAGAACCTATTAAGCCTCTAAAAAAATCCTTCCATATCTTTATAGCTGTACATATCAGAGGTATGTAAGATGCTCGTTCTGTTCAAGAATACGGCTTCAATTTAAGGACAGTTGATGTGAACAATACCATGAATTACGAGTGTGCTGATGCTACTTTTGGAGGTCTATTAAGTCTTCTATCCAATCTCTAGTGTATAGATAAGTTGACAGACTGTTGATTCAAATTCTCTCTTTCCTTTTTGGACAAAACAGACCCTCCTGCGAGCTATATCTTAAAAAACCTTACATTAACAGGGATCAGAAATTTCAGAAGTAGAGGGTGAGCAACTAAACAAGGGTTTGTGGAGCGTGAATGCTGAAGAATTTATGATCTGTTGATTTCTTATCATCCTTTTGCATCTAAACAATTAAGAAGTGAGATTTGTTATCATTCTCAAGGTTGGTTGCATCTTTGCTGTGTTGATTTTCTGATCATCCTCGGACATTTTCAATTATAGTTAGACCGAGAATGTCAGGAATTCCATAGGACCGTTAGACCAAACATACTACAAGGAAATAGTCTTTATCTTGCCTAATAATATGTTGGTGATGTGATGTGGAGTTCTTGAAGAGAACCCTTTTTCTTTCTAGCAACCAATATCTTAGGATGATGAGTTTGAAGAATGTGTAAATGGAGGAATCTCATAGTATCACAATTTTAATTTGAAATGTGTTTTGAACTTGTGACCATTAAGGAAGAGAATGAGTCTTTTATATTGGTTTGGTTCTCTCCTTTCCCTTTGGATCAATAGGTAAAGCTATTGGATTACTCCATCGACCTCGGTGTCTTTTCTTCTCGGAATCTAGTTTATTGCTGCTTGAAGATCTTTTTATTTGTAACTACGAATAACTTGTGAAAGATCGATCAATTTTGTTAGAATGATTATTTCAGTTTTATAAGTAGAGTAATATATAATAAAGCAAAATTGATTAGTTAGACCTCTTTAATTAATCAACTGAAAAGCGTTAAGAGTAAATTTGTATGGTCTAGCTGTCCATAGTAACCATATATATAGTTTGAAGTCTTCAAATATAAAATAAGAAAAATAGATATGCTAAATATAAAATAATGATATATTAAATATTAAGATAATGTATATTAGAAACATTAAATATATGCCTGAATTCTGAATTTCCAAATTGTTCGAAATTGAAGTTAGTTGAATATGGATTGAAATACTTTTATGATGTTTAAATATGATTTAAATAATATTTTAAATTTGAAAAATATTATCTCAAAGTCTATTAAAACTTGAGGATTTCTTTTAAGAGACTTTCATAAGTTAAAAGGGTTGAGATTTCATCTAGGTGGATT

mRNA sequence

CATCGTCGAATCCGACTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGATGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCTCTGCCTGTGCATTTCCAGCCGCCCGTAAGCGTACATATAACTGGAGCGTAAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGTCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTCAAGCAGCGCCAAGGAGCAAAGGAGCAGCCGCATCAGCATAAGACATTAAAGGTTACTTGTGGCACAACTTGGTACCATATTTATAGCTTCTAGGAGAAGTTTGTCATTTTTGGGACCAGAATCTATAAGAATTTTGTTTTATGATGTTAACACCTTCAATACTGAAACTTAATTTTATTTCTTACTGTATTGTTTATGGAAATTTTTATTGTTGTTTTGAGACCAGTTTCACCTTCGGTTAATCCATGTCTTGAGCTATTTACATCTAATCATTGTTGGAGTTTTTGCTGGTAGATATTGTTACCCTGAAGCCAGGGTAGAATCAGTTAGTAAGAAATTTGAGTCTTAAATCATGTGTTAATGAGTTGTTCCTCACTCATATATATATATATGATTAGGGTTGATAATCCAGAATAACTCAGCTAGTTGCTATTCTTTTTTTGGAATTGTTAGTGGTAGGGGTATGACTTGGTTATTGTTACAATTACTACATAACTAAGAAACCACTCGTTAGGAGATGTAGAGGCCGACTCAAGGAAATGGGCCATTGTAAAGCATCAAAACTAAGGGAAAAGATTGTCATCTTTTGGGATCGCAGGAAGAGAAAATTACTATAGGCTTTCGAAACAAGGAAATGAAGAAAGATGATGTTGAAGTGCATATAAGTTCAAACACTCTTATCTAGAACCTATTAAGCCTCTAAAAAAATCCTTCCATATCTTTATAGCTGTACATATCAGAGGTATGTAAGATGCTCGTTCTGTTCAAGAATACGGCTTCAATTTAAGGACAGTTGATGTGAACAATACCATGAATTACGAGTGTGCTGATGCTACTTTTGGAGGTCTATTAAGTCTTCTATCCAATCTCTAGTGTATAGATAAGTTGACAGACTGTTGATTCAAATTCTCTCTTTCCTTTTTGGACAAAACAGACCCTCCTGCGAGCTATATCTTAAAAAACCTTACATTAACAGGGATCAGAAATTTCAGAAGTAGAGGGTGAGCAACTAAACAAGGGTTTGTGGAGCGTGAATGCTGAAGAATTTATGATCTGTTGATTTCTTATCATCCTTTTGCATCTAAACAATTAAGAAGTGAGATTTGTTATCATTCTCAAGGTTGGTTGCATCTTTGCTGTGTTGATTTTCTGATCATCCTCGGACATTTTCAATTATAGTTAGACCGAGAATGTCAGGAATTCCATAGGACCGTTAGACCAAACATACTACAAGGAAATAGTCTTTATCTTGCCTAATAATATGTTGGTGATGTGATGTGGAGTTCTTGAAGAGAACCCTTTTTCTTTCTAGCAACCAATATCTTAGGATGATGAGTTTGAAGAATGTGTAAATGGAGGAATCTCATAGTATCACAATTTTAATTTGAAATGTGTTTTGAACTTGTGACCATTAAGGAAGAGAATGAGTCTTTTATATTGGTTTGGTTCTCTCCTTTCCCTTTGGATCAATAGGTAAAGCTATTGGATTACTCCATCGACCTCGGTGTCTTTTCTTCTCGGAATCTAGTTTATTGCTGCTTGAAGATCTTTTTATTTGTAACTACGAATAACTTGTGAAAGATCGATCAATTTTGTTAGAATGATTATTTCAGTTTTATAAGTAGAGTAATATATAATAAAGCAAAATTGATTAGTTAGACCTCTTTAATTAATCAACTGAAAAGCGTTAAGAGTAAATTTGTATGGTCTAGCTGTCCATAGTAACCATATATATAGTTTGAAGTCTTCAAATATAAAATAAGAAAAATAGATATGCTAAATATAAAATAATGATATATTAAATATTAAGATAATGTATATTAGAAACATTAAATATATGCCTGAATTCTGAATTTCCAAATTGTTCGAAATTGAAGTTAGTTGAATATGGATTGAAATACTTTTATGATGTTTAAATATGATTTAAATAATATTTTAAATTTGAAAAATATTATCTCAAAGTCTATTAAAACTTGAGGATTTCTTTTAAGAGACTTTCATAAGTTAAAAGGGTTGAGATTTCATCTAGGTGGATT

Coding sequence (CDS)

ATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGATGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCTCTGCCTGTGCATTTCCAGCCGCCCGTAAGCGTACATATAACTGGAGCGTAAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGTCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTCAAGCAGCGCCAAGGAGCAAAGGAGCAGCCGCATCAGCATAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA
Homology
[Close]
BLAST of Carg06480 vs. NCBI nr
Match: XP_022955411.1 (60S ribosomal protein L37-3 [Cucurbita moschata] >XP_022979289.1 60S ribosomal protein L37-3 [Cucurbita maxima] >XP_023526471.1 60S ribosomal protein L37-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 95

[Close]
BLAST of Carg06480 vs. NCBI nr
Match: XP_022150495.1 (60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022998691.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023523625.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.2 bits (474), Expect = 2.6e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPRSKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Carg06480 vs. NCBI nr
Match: XP_004150353.1 (PREDICTED: 60S ribosomal protein L37-3 [Cucumis sativus] >XP_008447511.1 PREDICTED: 60S ribosomal protein L37-3 [Cucumis melo] >KGN58070.1 hypothetical protein Csa_3G483790 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 5.8e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPRSKGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Carg06480 vs. NCBI nr
Match: XP_022964011.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 5.8e-44
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Carg06480 vs. NCBI nr
Match: XP_006426971.1 (60S ribosomal protein L37-3 [Citrus clementina] >XP_006465606.1 60S ribosomal protein L37-3 [Citrus sinensis] >ESR40211.1 hypothetical protein CICLE_v10026841mg [Citrus clementina] >KDO56887.1 hypothetical protein CISIN_1g034400mg [Citrus sinensis] >GAY51169.1 hypothetical protein CUMW_132210 [Citrus unshiu])

HSP 1 Score: 185.7 bits (470), Expect = 7.5e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Carg06480 vs. TAIR10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 174.5 bits (441), Expect = 3.2e-44
Identity = 84/95 (88.42%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Carg06480 vs. TAIR10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Carg06480 vs. TAIR10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Carg06480 vs. Swiss-Prot
Match: sp|Q8LEM8|RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.7e-43
Identity = 84/95 (88.42%), Postives = 93/95 (97.89%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Carg06480 vs. Swiss-Prot
Match: sp|Q43292|RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Carg06480 vs. Swiss-Prot
Match: sp|Q8LFH7|RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Carg06480 vs. Swiss-Prot
Match: sp|Q9VXX8|RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-29
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS C+ C +PAA+ R+YNWSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAA 93
          TGRM++++ V RRF++GFREGTQA P+   A+
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]
BLAST of Carg06480 vs. Swiss-Prot
Match: sp|Q90YT1|RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-29
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]
BLAST of Carg06480 vs. TrEMBL
Match: tr|A0A1S3BHL0|A0A1S3BHL0_CUCME (Ribosomal protein L37 OS=Cucumis melo OX=3656 GN=LOC103489942 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPRSKGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Carg06480 vs. TrEMBL
Match: tr|A0A0A0L819|A0A0A0L819_CUCSA (Ribosomal protein L37 OS=Cucumis sativus OX=3659 GN=Csa_3G483790 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPRSKGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Carg06480 vs. TrEMBL
Match: tr|V4SSW5|V4SSW5_9ROSI (Ribosomal protein L37 OS=Citrus clementina OX=85681 GN=CICLE_v10026841mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.0e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Carg06480 vs. TrEMBL
Match: tr|A0A2H5PFN2|A0A2H5PFN2_CITUN (Ribosomal protein L37 OS=Citrus unshiu OX=55188 GN=CUMW_132210 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.0e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Carg06480 vs. TrEMBL
Match: tr|A0A1J7I2W0|A0A1J7I2W0_LUPAN (Ribosomal protein L37 OS=Lupinus angustifolius OX=3871 GN=TanjilG_16324 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.0e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAASA 95

The following BLAST results are available for this feature:
BLAST of Carg06480 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955411.12.3e-45100.0060S ribosomal protein L37-3 [Cucurbita moschata] >XP_022979289.1 60S ribosomal p... [more]
XP_022150495.12.6e-4497.8960S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal ... [more]
XP_004150353.15.8e-4495.79PREDICTED: 60S ribosomal protein L37-3 [Cucumis sativus] >XP_008447511.1 PREDICT... [more]
XP_022964011.15.8e-4496.8460S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S riboso... [more]
XP_006426971.17.5e-4495.7960S ribosomal protein L37-3 [Citrus clementina] >XP_006465606.1 60S ribosomal pr... [more]
BLAST of Carg06480 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16080.13.2e-4488.42Zinc-binding ribosomal protein family protein[more]
AT1G52300.11.6e-4387.37Zinc-binding ribosomal protein family protein[more]
AT1G15250.12.7e-4387.37Zinc-binding ribosomal protein family protein[more]
BLAST of Carg06480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LEM8|RL373_ARATH5.7e-4388.4260S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1[more]
sp|Q43292|RL372_ARATH2.8e-4287.3760S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2[more]
sp|Q8LFH7|RL371_ARATH4.8e-4287.3760S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1[more]
sp|Q9VXX8|RL371_DROME2.1e-2967.39Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37... [more]
sp|Q90YT1|RL37_ICTPU4.7e-2967.3760S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3[more]
BLAST of Carg06480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BHL0|A0A1S3BHL0_CUCME3.8e-4495.79Ribosomal protein L37 OS=Cucumis melo OX=3656 GN=LOC103489942 PE=3 SV=1[more]
tr|A0A0A0L819|A0A0A0L819_CUCSA3.8e-4495.79Ribosomal protein L37 OS=Cucumis sativus OX=3659 GN=Csa_3G483790 PE=3 SV=1[more]
tr|V4SSW5|V4SSW5_9ROSI5.0e-4495.79Ribosomal protein L37 OS=Citrus clementina OX=85681 GN=CICLE_v10026841mg PE=3 SV... [more]
tr|A0A2H5PFN2|A0A2H5PFN2_CITUN5.0e-4495.79Ribosomal protein L37 OS=Citrus unshiu OX=55188 GN=CUMW_132210 PE=3 SV=1[more]
tr|A0A1J7I2W0|A0A1J7I2W0_LUPAN5.0e-4495.79Ribosomal protein L37 OS=Lupinus angustifolius OX=3871 GN=TanjilG_16324 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR018267Ribosomal_L37e_CS
IPR001569Ribosomal_L37e
IPR011331Ribosomal_L37ae/L37e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06480-RACarg06480-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011331Ribosomal protein L37ae/L37eGENE3DG3DSA:2.20.25.30coord: 1..87
e-value: 3.1E-45
score: 154.3
IPR001569Ribosomal protein L37ePFAMPF01907Ribosomal_L37ecoord: 3..53
e-value: 8.5E-26
score: 89.8
IPR001569Ribosomal protein L37ePRODOMPD005132coord: 9..49
e-value: 8.0E-17
score: 207.0
IPR001569Ribosomal protein L37eHAMAPMF_00547Ribosomal_L37ecoord: 2..53
score: 16.119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..95
NoneNo IPR availablePANTHERPTHR10768:SF1160S RIBOSOMAL PROTEIN L37-Bcoord: 1..83
NoneNo IPR availablePANTHERPTHR1076860S RIBOSOMAL PROTEIN L37coord: 1..83
IPR018267Ribosomal protein L37e, conserved sitePROSITEPS01077RIBOSOMAL_L37Ecoord: 4..23
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 1..55

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06480Cla015443Watermelon (97103) v1carwmB0117
Carg06480Cla012674Watermelon (97103) v1carwmB0120
Carg06480Csa7G446890Cucumber (Chinese Long) v2carcuB0130
Carg06480Csa3G483790Cucumber (Chinese Long) v2carcuB0127
Carg06480MELO3C012967Melon (DHL92) v3.5.1carmeB0125
Carg06480MELO3C024244Melon (DHL92) v3.5.1carmeB0121
Carg06480ClCG07G013110Watermelon (Charleston Gray)carwcgB0121
Carg06480ClCG09G002030Watermelon (Charleston Gray)carwcgB0117
Carg06480CSPI07G21410Wild cucumber (PI 183967)carcpiB0135
Carg06480Cucsa.062030Cucumber (Gy14) v1carcgyB0140
Carg06480Cucsa.359150Cucumber (Gy14) v1carcgyB0147
Carg06480CmaCh08G006960Cucurbita maxima (Rimu)carcmaB0160
Carg06480CmaCh14G013080Cucurbita maxima (Rimu)carcmaB0154
Carg06480CmaCh17G008000Cucurbita maxima (Rimu)carcmaB0155
Carg06480CmaCh01G001100Cucurbita maxima (Rimu)carcmaB0157
Carg06480CmoCh01G001150Cucurbita moschata (Rifu)carcmoB0166
Carg06480CmoCh17G007690Cucurbita moschata (Rifu)carcmoB0164
Carg06480CmoCh14G013430Cucurbita moschata (Rifu)carcmoB0163
Carg06480CmoCh08G006610Cucurbita moschata (Rifu)carcmoB0169
Carg06480Lsi02G027950Bottle gourd (USVL1VR-Ls)carlsiB106
Carg06480Cp4.1LG17g05550Cucurbita pepo (Zucchini)carcpeB0173
Carg06480Cp4.1LG12g08080Cucurbita pepo (Zucchini)carcpeB0171
Carg06480Cp4.1LG03g13980Cucurbita pepo (Zucchini)carcpeB0176
Carg06480Cp4.1LG02g14630Cucurbita pepo (Zucchini)carcpeB0175
Carg06480CsGy3G023030Cucumber (Gy14) v2carcgybB0125
Carg06480CsGy7G019770Cucumber (Gy14) v2carcgybB0130
Carg06480MELO3C030793.2Melon (DHL92) v3.6.1carmedB0128
Carg06480MELO3C024244.2Melon (DHL92) v3.6.1carmedB0124
Carg06480CsaV3_7G033310Cucumber (Chinese Long) v3carcucB0139
Carg06480Cla97C09G164160Watermelon (97103) v2carwmbB0127
Carg06480Bhi01G002643Wax gourdcarwgoB0138
Carg06480Bhi09G000130Wax gourdcarwgoB0149
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06480Carg04261Silver-seed gourdcarcarB139
Carg06480Carg18798Silver-seed gourdcarcarB143
Carg06480Carg09525Silver-seed gourdcarcarB145
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06480Silver-seed gourdcarcarB140
Carg06480Wild cucumber (PI 183967)carcpiB0131
Carg06480Wild cucumber (PI 183967)carcpiB0132
Carg06480Cucumber (Chinese Long) v2carcuB0126
Carg06480Cucumber (Chinese Long) v3carcucB0135
Carg06480Bottle gourd (USVL1VR-Ls)carlsiB109
Carg06480Melon (DHL92) v3.6.1carmedB0130
Carg06480Watermelon (97103) v2carwmbB0126