Cp4.1LG03g13980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g13980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosomal protein L37
LocationCp4.1LG03 : 9138106 .. 9139464 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAACATGACATGTCACAGGGAGTAGAGGCCGAATCCGAATTTTGAATCCCGAACATGGGTCGCTACAACACTTGTTTCTCATAACCTATATGATAAATTTTCCCAAGAAAGATTGTTGGGCTTTTTCCTCTTGAAGAGGAAGGTCCACTCGCGGGCCCAAAGGGCGGACCCAATCCAGTAGAAAAGATTCGGGTTAGGTCAAAGCTACGTGGGTCGGGTTTTTTGACACCCAATTACTTCAAACCCTTCAAACCCTAAACCCTGTCAATATAAAGGCTGCCGCCTACATTTCAGCCCTCTTTGGACGGAAGAAGAATCCGAAGGCTTCATCGTCGAATCCGACTAAATGGTAATGGCGAACTTACTTTTGTAAACTCAATCTCTTCCCTTTCTACATGATTGTTGTTGAATTCGGAATTTTAGTGCGTTAATCGATTTGTTTGTTGATCGGTAATTAGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCTCTGCCTGTGCATTTCCAGCCGCCCGTAAGCGTACATGTAAGTTCGCTTAATCAATTTGTAATTTGTTTTTGGTTGTTTCATCATTGCGCAATTAATCCTCTTTTATATGCTGAGCTTAATTTATTGAATCGATTAGAAGTGATAATCGTAGATTCATCATTATCGACCCAGATAGCAGTAGATTCGTTATGCGTACCCTAATCTGTTTGAGTGAATATCATTTACTCTTGGGTCTTCAATTTTGGTCCAGTTGTTCCTTTTTCTTATGCGGGTTTTGGATTTAGATAACTGGAGCGTGAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGTCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTTATACTCTAAGTTGTATATTTCTTGCATTTTCTGCTTGTCAACTGTTTTTTGGGGCATTTTGTGATTTGTAATTACCTTTGGATTTGGTGATTAGGTACTCAAGCAGCACCAAGGAGCAAAGGAGCAGCCGCATCAGCCTAAGACATTAAAGGTTACTTGTGGCACAACTTGGTACCATATTTATAGCTTCTAGGAGAAGTTTGTCATTTTTGGGACCAGAATCTATAAGAATTTTGTTTTGTGATGTTAACACCTTCAATACTGAAACTTATTTTTATTTCTTACTGTATTGTTTATGGAATTTTTTATTGTTGTTTTGAGACCACTTTCACCTTTCGTTAATCTATGTCTTGAGCTATATACATCTAATCATTGTTGGAGTTTTTGCTGGTAGATATTGTTACCGTGAA

mRNA sequence

TGTAACATGACATGTCACAGGGAGTAGAGGCCGAATCCGAATTTTGAATCCCGAACATGGGTCGCTACAACACTTGTTTCTCATAACCTATATGATAAATTTTCCCAAGAAAGATTGTTGGGCTTTTTCCTCTTGAAGAGGAAGGTCCACTCGCGGGCCCAAAGGGCGGACCCAATCCAGTAGAAAAGATTCGGGTTAGGTCAAAGCTACGTGGGTCGGGTTTTTTGACACCCAATTACTTCAAACCCTTCAAACCCTAAACCCTGTCAATATAAAGGCTGCCGCCTACATTTCAGCCCTCTTTGGACGGAAGAAGAATCCGAAGGCTTCATCGTCGAATCCGACTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCTCTGCCTGTGCATTTCCAGCCGCCCGTAAGCGTACATATAACTGGAGCGTGAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGTCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTCAAGCAGCACCAAGGAGCAAAGGAGCAGCCGCATCAGCCTAAGACATTAAAGGTTACTTGTGGCACAACTTGGTACCATATTTATAGCTTCTAGGAGAAGTTTGTCATTTTTGGGACCAGAATCTATAAGAATTTTGTTTTGTGATGTTAACACCTTCAATACTGAAACTTATTTTTATTTCTTACTGTATTGTTTATGGAATTTTTTATTGTTGTTTTGAGACCACTTTCACCTTTCGTTAATCTATGTCTTGAGCTATATACATCTAATCATTGTTGGAGTTTTTGCTGGTAGATATTGTTACCGTGAA

Coding sequence (CDS)

ATGGGTAAGGGAACGGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGTCGATGCTCTGCCTGTGCATTTCCAGCCGCCCGTAAGCGTACATATAACTGGAGCGTGAAGGCGATCCGAAGGAAGACCACTGGAACTGGGCGGATGAGATACATGCGTCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTCAAGCAGCACCAAGGAGCAAAGGAGCAGCCGCATCAGCCTAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA
Homology
[Close]
BLAST of Cp4.1LG03g13980 vs. Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.6e-43
Identity = 84/95 (88.42%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Cp4.1LG03g13980 vs. Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-29
Identity = 62/92 (67.39%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS C+ C +PAA+ R+YNWSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAA 93
          TGRM++++ V RRF++GFREGTQA P+   A+
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]
BLAST of Cp4.1LG03g13980 vs. Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-29
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TrEMBL
Match: A0A0A0L819_CUCSA (Ribosomal protein L37 OS=Cucumis sativus GN=Csa_3G483790 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPRSKGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TrEMBL
Match: A0A067F063_CITSI (Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TrEMBL
Match: V4SSW5_9ROSI (Ribosomal protein L37 OS=Citrus clementina GN=CICLE_v10026841mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TrEMBL
Match: A0A0A0K941_CUCSA (Ribosomal protein L37 OS=Cucumis sativus GN=Csa_7G446890 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-43
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR+KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TrEMBL
Match: D3GC12_JATCU (Ribosomal protein L37 OS=Jatropha curcas GN=JCGZ_06286 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-43
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAA++
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAATS 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TAIR10
Match: AT3G16080.1 (AT3G16080.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 174.5 bits (441), Expect = 3.2e-44
Identity = 84/95 (88.42%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PRSK +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TAIR10
Match: AT1G52300.1 (AT1G52300.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR+KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. TAIR10
Match: AT1G15250.1 (AT1G15250.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR+K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Cp4.1LG03g13980 vs. NCBI nr
Match: gi|449465274|ref|XP_004150353.1| (PREDICTED: 60S ribosomal protein L37-3 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-44
Identity = 91/95 (95.79%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPRSKGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. NCBI nr
Match: gi|567868697|ref|XP_006426971.1| (hypothetical protein CICLE_v10026841mg [Citrus clementina])

HSP 1 Score: 185.7 bits (470), Expect = 3.9e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. NCBI nr
Match: gi|1009112311|ref|XP_015867587.1| (PREDICTED: 60S ribosomal protein L37-3 [Ziziphus jujuba])

HSP 1 Score: 185.3 bits (469), Expect = 5.1e-44
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+AC FPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. NCBI nr
Match: gi|1021561234|ref|XP_016171857.1| (PREDICTED: 60S ribosomal protein L37-3 [Arachis ipaensis])

HSP 1 Score: 184.5 bits (467), Expect = 8.6e-44
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAASA 95

[Close]
BLAST of Cp4.1LG03g13980 vs. NCBI nr
Match: gi|449448036|ref|XP_004141772.1| (PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR+KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g13980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL373_ARATH5.6e-4388.4260S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1[more]
RL372_ARATH2.8e-4287.3760S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2[more]
RL371_ARATH4.7e-4287.3760S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1[more]
RL371_DROME2.1e-2967.39Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=1 S... [more]
RL37_ICTPU4.6e-2967.3760S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3[more]
BLAST of Cp4.1LG03g13980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L819_CUCSA2.1e-4495.79Ribosomal protein L37 OS=Cucumis sativus GN=Csa_3G483790 PE=3 SV=1[more]
A0A067F063_CITSI2.7e-4495.79Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1[more]
V4SSW5_9ROSI2.7e-4495.79Ribosomal protein L37 OS=Citrus clementina GN=CICLE_v10026841mg PE=3 SV=1[more]
A0A0A0K941_CUCSA1.0e-4394.74Ribosomal protein L37 OS=Cucumis sativus GN=Csa_7G446890 PE=3 SV=1[more]
D3GC12_JATCU1.3e-4394.74Ribosomal protein L37 OS=Jatropha curcas GN=JCGZ_06286 PE=2 SV=1[more]
BLAST of Cp4.1LG03g13980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16080.13.2e-4488.42 Zinc-binding ribosomal protein family protein[more]
AT1G52300.11.6e-4387.37 Zinc-binding ribosomal protein family protein[more]
AT1G15250.12.7e-4387.37 Zinc-binding ribosomal protein family protein[more]
BLAST of Cp4.1LG03g13980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465274|ref|XP_004150353.1|3.0e-4495.79PREDICTED: 60S ribosomal protein L37-3 [Cucumis sativus][more]
gi|567868697|ref|XP_006426971.1|3.9e-4495.79hypothetical protein CICLE_v10026841mg [Citrus clementina][more]
gi|1009112311|ref|XP_015867587.1|5.1e-4495.79PREDICTED: 60S ribosomal protein L37-3 [Ziziphus jujuba][more]
gi|1021561234|ref|XP_016171857.1|8.6e-4495.79PREDICTED: 60S ribosomal protein L37-3 [Arachis ipaensis][more]
gi|449448036|ref|XP_004141772.1|1.5e-4394.74PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018267Ribosomal_L37e_CS
IPR011332Ribosomal_zn-bd
IPR011331Ribosomal_L37ae/L37e
IPR001569Ribosomal_L37e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g13980.1Cp4.1LG03g13980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001569Ribosomal protein L37ePRODOMPD005132coord: 9..49
score: 8.0
IPR001569Ribosomal protein L37eHAMAPMF_00547Ribosomal_L37ecoord: 2..53
score: 16
IPR001569Ribosomal protein L37ePFAMPF01907Ribosomal_L37ecoord: 3..53
score: 8.6
IPR011331Ribosomal protein L37ae/L37eGENE3DG3DSA:2.20.25.30coord: 1..55
score: 2.2
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 1..55
score: 1.56
IPR018267Ribosomal protein L37e, conserved sitePROSITEPS01077RIBOSOMAL_L37Ecoord: 4..23
scor
NoneNo IPR availablePANTHERPTHR1076860S RIBOSOMAL PROTEIN L37coord: 1..94
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g13980Cucsa.062030Cucumber (Gy14) v1cgycpeB0086
Cp4.1LG03g13980CmaCh01G001100Cucurbita maxima (Rimu)cmacpeB493
Cp4.1LG03g13980CmaCh08G006960Cucurbita maxima (Rimu)cmacpeB929
Cp4.1LG03g13980CmaCh14G013080Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g13980CmaCh17G008000Cucurbita maxima (Rimu)cmacpeB400
Cp4.1LG03g13980CmoCh17G007690Cucurbita moschata (Rifu)cmocpeB362
Cp4.1LG03g13980CmoCh08G006610Cucurbita moschata (Rifu)cmocpeB863
Cp4.1LG03g13980CmoCh14G013430Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g13980CmoCh01G001150Cucurbita moschata (Rifu)cmocpeB452
Cp4.1LG03g13980Cla012674Watermelon (97103) v1cpewmB600
Cp4.1LG03g13980Csa3G483790Cucumber (Chinese Long) v2cpecuB613
Cp4.1LG03g13980MELO3C012967Melon (DHL92) v3.5.1cpemeB573
Cp4.1LG03g13980MELO3C024244Melon (DHL92) v3.5.1cpemeB563
Cp4.1LG03g13980ClCG07G013110Watermelon (Charleston Gray)cpewcgB571
Cp4.1LG03g13980MELO3C024244.2Melon (DHL92) v3.6.1cpemedB667
Cp4.1LG03g13980MELO3C030793.2Melon (DHL92) v3.6.1cpemedB680
Cp4.1LG03g13980CsaV3_7G033310Cucumber (Chinese Long) v3cpecucB0793
Cp4.1LG03g13980Bhi09G000130Wax gourdcpewgoB0821
Cp4.1LG03g13980Bhi01G002643Wax gourdcpewgoB0771
Cp4.1LG03g13980CsGy7G019770Cucumber (Gy14) v2cgybcpeB963
Cp4.1LG03g13980CsGy3G023030Cucumber (Gy14) v2cgybcpeB400
Cp4.1LG03g13980Carg04261Silver-seed gourdcarcpeB0287
Cp4.1LG03g13980Carg18798Silver-seed gourdcarcpeB1054
Cp4.1LG03g13980Carg09525Silver-seed gourdcarcpeB1430
Cp4.1LG03g13980Carg06480Silver-seed gourdcarcpeB0176
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g13980Cp4.1LG12g08080Cucurbita pepo (Zucchini)cpecpeB182
Cp4.1LG03g13980Cp4.1LG17g05550Cucurbita pepo (Zucchini)cpecpeB334
Cp4.1LG03g13980Cp4.1LG02g14630Cucurbita pepo (Zucchini)cpecpeB451
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g13980Cucumber (Chinese Long) v3cpecucB0752
Cp4.1LG03g13980Wild cucumber (PI 183967)cpecpiB606
Cp4.1LG03g13980Wild cucumber (PI 183967)cpecpiB615
Cp4.1LG03g13980Cucumber (Chinese Long) v2cpecuB604
Cp4.1LG03g13980Bottle gourd (USVL1VR-Ls)cpelsiB516