Carg18798 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18798
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal protein L37
Location	Cucurbita_argyrosperma_scaffold_123 : 302879 .. 303807 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAGTGTAAGCACACTCGATGTTTCGCCTTTTTCGTCACTGTTCACTTTCTATAATTCGGTTTAAATCGACTATTTTGACGTTTGTTTATTTTGATTCAATGTAATGCTGCCTTGAGTAACCATTGATGTGTATGGTAGTTAGTTGCTAGTGTTGTGTATTAAGCCTGATAAGATGGTTGAGTCTGCGAATGTGAATGAGGTTCATTTGTTCGCTGGAGTAACGTGAAGTGATCATATTGATTTTGGTTTTCCGTGGAGATTGAATTAATCTTGATTCATTTCGTTGGCGTTGGGATTATTTAGATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTATGATATTGTATTTGTAATTGATTCAATTTTTCGCACCATTTACTGCATTTACGTACTGGGTTTCAGAATTACCTGGGTTTTCATGCCTTGAAATTGCTTTGTGTTTGTCATTAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGGCTTTACTCGTCTGAGGATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAAGATGAATCAGATTATTCGTACTCTGGTACTTGTTTTTGTGCT

mRNA sequence

CTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGGCTTTACTCGTCTGAGGATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAAGATGAATCAGATTATTCGTACTCTGGTACTTGTTTTTGTGCT

Coding sequence (CDS)

CTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAA

Protein sequence

LARLIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA

Homology

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: PPD83667.1 (hypothetical protein GOBAR_DD19392 [Gossypium barbadense])

HSP 1 Score: 113.2 bits (282), Expect = 5.0e-22
Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA----------SENNWSV 66
           R R + VLV+ GTRP LS  G  A ASISRRV    VLSLL +            +NWSV
Sbjct: 3   REREQGVLVKEGTRPTLSALGVVAVASISRRVIALPVLSLLLSLNLRGFALLWDSDNWSV 62

Query: 67  KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           KA RRKTTGTGRMRY+ HVPRRFK+GFREGTEAAPRNK AAASA
Sbjct: 63  KANRRKTTGTGRMRYLLHVPRRFKTGFREGTEAAPRNKVAAASA 106

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: OIW03817.1 (hypothetical protein TanjilG_30093 [Lupinus angustifolius])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 6   YRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTTG 65
           +R R + V VRG TRP LSV G AAAAS S+RV     L+L PA  N     AIRRKTTG
Sbjct: 9   HRGREQGVSVRGETRPTLSVSGVAAAASTSKRVVAPLALTLPPAFAN-----AIRRKTTG 68

Query: 66  TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           TGRMRY+RHVPRRFKSGFREGTEAAPR KGAAA+A
Sbjct: 69  TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAATA 98

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: PPD93922.1 (hypothetical protein GOBAR_DD09073 [Gossypium barbadense])

HSP 1 Score: 105.9 bits (263), Expect = 8.0e-20
Identity = 62/102 (60.78%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA--------------SEN 66
           R R + VLV+ GTRP LS  G AA ASISR      VLSLL                  +
Sbjct: 3   REREQGVLVKEGTRPTLSALGVAAVASISRGAVALPVLSLLLVRGHSLNLRGIALLWDSD 62

Query: 67  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNK 95
           NWSVKAIRRKTTGTG+MRY+RHVPRRFK+GFREGTEAAPR K
Sbjct: 63  NWSVKAIRRKTTGTGKMRYLRHVPRRFKTGFREGTEAAPRKK 104

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: PPD96169.1 (hypothetical protein GOBAR_DD06803 [Gossypium barbadense])

HSP 1 Score: 102.8 bits (255), Expect = 6.8e-19
Identity = 63/96 (65.62%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 5   IYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTT 64
           +YR R   VLV+ GTRP LS  G A  ASISRR     VLSLL        VKAIRRKTT
Sbjct: 1   MYREREHGVLVKEGTRPTLSALGVATVASISRRAIALPVLSLLLV--RGHIVKAIRRKTT 60

Query: 65  GTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           GTGRMRY+ HVPRRFK+ FREGT+AAPR K AAASA
Sbjct: 61  GTGRMRYLHHVPRRFKTCFREGTKAAPRKKVAAASA 94

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: PPD79126.1 (hypothetical protein GOBAR_DD23947 [Gossypium barbadense])

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 63/103 (61.17%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 11  REVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA--------------SENNWSV 70
           + VLV+ GTRP LS  G AA ASISR V    VLSLL                  +NWSV
Sbjct: 3   QRVLVKEGTRPTLSALGVAAIASISRTVVALPVLSLLLVRGHSLNLRGIALLWDSDNWSV 62

Query: 71  KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAAS 100
           KAIRRKTT TGRMRY+RH PRRFK+GFREGTEAA R K AAAS
Sbjct: 63  KAIRRKTTRTGRMRYLRHGPRRFKTGFREGTEAALRKKVAAAS 105

[Close]

BLAST of Carg18798 vs. TAIR10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.3e-18
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Carg18798 vs. TAIR10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-17
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Carg18798 vs. TAIR10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]

BLAST of Carg18798 vs. Swiss-Prot
Match: sp|Q43292|RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Carg18798 vs. Swiss-Prot
Match: sp|Q8LEM8|RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Carg18798 vs. Swiss-Prot
Match: sp|P49212|RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum OX=4081 GN=RPL37 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKA+RRKTTGTGRMRY+R+VPRRFK+ FREGTEAAPR KG AA++
Sbjct: 17  NWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGTAAAS 64

[Close]

BLAST of Carg18798 vs. Swiss-Prot
Match: sp|Q8LFH7|RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.9e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]

BLAST of Carg18798 vs. Swiss-Prot
Match: sp|Q9VXX8|RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.4e-09
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 53 NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAA 98
          NWSVKA RRKTTGTGRM++++ V RRF++GFREGT+A P+   A+
Sbjct: 48 NWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]

BLAST of Carg18798 vs. TrEMBL
Match: tr|A0A2P5RA40|A0A2P5RA40_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19392 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-22
Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA----------SENNWSV 66
           R R + VLV+ GTRP LS  G  A ASISRRV    VLSLL +            +NWSV
Sbjct: 3   REREQGVLVKEGTRPTLSALGVVAVASISRRVIALPVLSLLLSLNLRGFALLWDSDNWSV 62

Query: 67  KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           KA RRKTTGTGRMRY+ HVPRRFK+GFREGTEAAPRNK AAASA
Sbjct: 63  KANRRKTTGTGRMRYLLHVPRRFKTGFREGTEAAPRNKVAAASA 106

[Close]

BLAST of Carg18798 vs. TrEMBL
Match: tr|A0A2P5S4F5|A0A2P5S4F5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09073 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-20
Identity = 62/102 (60.78%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA--------------SEN 66
           R R + VLV+ GTRP LS  G AA ASISR      VLSLL                  +
Sbjct: 3   REREQGVLVKEGTRPTLSALGVAAVASISRGAVALPVLSLLLVRGHSLNLRGIALLWDSD 62

Query: 67  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNK 95
           NWSVKAIRRKTTGTG+MRY+RHVPRRFK+GFREGTEAAPR K
Sbjct: 63  NWSVKAIRRKTTGTGKMRYLRHVPRRFKTGFREGTEAAPRKK 104

[Close]

BLAST of Carg18798 vs. TrEMBL
Match: tr|A0A2P5SAV5|A0A2P5SAV5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06803 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-19
Identity = 63/96 (65.62%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 5   IYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTT 64
           +YR R   VLV+ GTRP LS  G A  ASISRR     VLSLL        VKAIRRKTT
Sbjct: 1   MYREREHGVLVKEGTRPTLSALGVATVASISRRAIALPVLSLLLV--RGHIVKAIRRKTT 60

Query: 65  GTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           GTGRMRY+ HVPRRFK+ FREGT+AAPR K AAASA
Sbjct: 61  GTGRMRYLHHVPRRFKTCFREGTKAAPRKKVAAASA 94

[Close]

BLAST of Carg18798 vs. TrEMBL
Match: tr|A0A2P5QX58|A0A2P5QX58_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23947 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 63/103 (61.17%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 11  REVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA--------------SENNWSV 70
           + VLV+ GTRP LS  G AA ASISR V    VLSLL                  +NWSV
Sbjct: 3   QRVLVKEGTRPTLSALGVAAIASISRTVVALPVLSLLLVRGHSLNLRGIALLWDSDNWSV 62

Query: 71  KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAAS 100
           KAIRRKTT TGRMRY+RH PRRFK+GFREGTEAA R K AAAS
Sbjct: 63  KAIRRKTTRTGRMRYLRHGPRRFKTGFREGTEAALRKKVAAAS 105

[Close]

BLAST of Carg18798 vs. TrEMBL
Match: tr|A0A2P5PY58|A0A2P5PY58_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35879 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 59/96 (61.46%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 19  TRPILSVCGAAAAASISRRVGVQHVLSLLPA--------------SENNWSVKAIRRKTT 78
           TRP LS  G AA ASISR+  V  +LSLL                  +NWSVKAIRR TT
Sbjct: 189 TRPTLSALGVAAVASISRKAVVLPMLSLLLVRGHSLNLRGIALLWDSDNWSVKAIRRMTT 248

Query: 79  GTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           GTGRMRY+RHVPRRFK+ FREGTEAAP+ K AAASA
Sbjct: 249 GTGRMRYLRHVPRRFKTSFREGTEAAPKKKVAAASA 284

The following BLAST results are available for this feature:

BLAST of Carg18798 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD83667.1	5.0e-22	65.38	hypothetical protein GOBAR_DD19392 [Gossypium barbadense]	[more]
OIW03817.1	1.5e-21	69.47	hypothetical protein TanjilG_30093 [Lupinus angustifolius]	[more]
PPD93922.1	8.0e-20	60.78	hypothetical protein GOBAR_DD09073 [Gossypium barbadense]	[more]
PPD96169.1	6.8e-19	65.63	hypothetical protein GOBAR_DD06803 [Gossypium barbadense]	[more]
PPD79126.1	1.5e-18	61.17	hypothetical protein GOBAR_DD23947 [Gossypium barbadense]	[more]

BLAST of Carg18798 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52300.1	5.3e-18	87.50	Zinc-binding ribosomal protein family protein	[more]
AT3G16080.1	7.7e-17	83.33	Zinc-binding ribosomal protein family protein	[more]
AT1G15250.1	3.8e-16	81.25	Zinc-binding ribosomal protein family protein	[more]

BLAST of Carg18798 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q43292\|RL372_ARATH	9.6e-17	87.50	60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2	[more]
sp\|Q8LEM8\|RL373_ARATH	1.4e-15	83.33	60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1	[more]
sp\|P49212\|RL37_SOLLC	2.4e-15	81.25	60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum OX=4081 GN=RPL37 PE...	[more]
sp\|Q8LFH7\|RL371_ARATH	6.9e-15	81.25	60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1	[more]
sp\|Q9VXX8\|RL371_DROME	7.4e-09	64.44	Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37...	[more]

BLAST of Carg18798 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5RA40\|A0A2P5RA40_GOSBA	3.3e-22	65.38	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD19392 PE=4 SV...	[more]
tr\|A0A2P5S4F5\|A0A2P5S4F5_GOSBA	5.3e-20	60.78	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09073 PE=4 SV...	[more]
tr\|A0A2P5SAV5\|A0A2P5SAV5_GOSBA	4.5e-19	65.63	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD06803 PE=4 SV...	[more]
tr\|A0A2P5QX58\|A0A2P5QX58_GOSBA	1.0e-18	61.17	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23947 PE=4 SV...	[more]
tr\|A0A2P5PY58\|A0A2P5PY58_GOSBA	2.9e-18	61.46	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD35879 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR011331	Ribosomal_L37ae/L37e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18798-RA	Carg18798-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	G3DSA:2.20.25.30		coord: 23..92 e-value: 7.2E-19 score: 69.7
None	No IPR available	PANTHER	PTHR10768	60S RIBOSOMAL PROTEIN L37	coord: 53..97
None	No IPR available	PANTHER	PTHR10768:SF0	RIBOSOMAL PROTEIN L37	coord: 53..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18798	Cla015443	Watermelon (97103) v1	carwmB0743
Carg18798	Cla012674	Watermelon (97103) v1	carwmB0746
Carg18798	Csa3G483790	Cucumber (Chinese Long) v2	carcuB0760
Carg18798	Csa7G446890	Cucumber (Chinese Long) v2	carcuB0763
Carg18798	MELO3C012967	Melon (DHL92) v3.5.1	carmeB0742
Carg18798	MELO3C024244	Melon (DHL92) v3.5.1	carmeB0741
Carg18798	ClCG09G002030	Watermelon (Charleston Gray)	carwcgB0722
Carg18798	ClCG07G013110	Watermelon (Charleston Gray)	carwcgB0725
Carg18798	CSPI07G21410	Wild cucumber (PI 183967)	carcpiB0780
Carg18798	Cucsa.062030	Cucumber (Gy14) v1	carcgyB0836
Carg18798	Cucsa.359150	Cucumber (Gy14) v1	carcgyB0839
Carg18798	CmaCh08G006960	Cucurbita maxima (Rimu)	carcmaB1046
Carg18798	CmaCh17G008000	Cucurbita maxima (Rimu)	carcmaB1044
Carg18798	CmaCh14G013080	Cucurbita maxima (Rimu)	carcmaB1043
Carg18798	CmaCh01G001100	Cucurbita maxima (Rimu)	carcmaB1045
Carg18798	CmoCh14G013430	Cucurbita moschata (Rifu)	carcmoB1014
Carg18798	CmoCh01G001150	Cucurbita moschata (Rifu)	carcmoB1017
Carg18798	CmoCh08G006610	Cucurbita moschata (Rifu)	carcmoB1018
Carg18798	CmoCh17G007690	Cucurbita moschata (Rifu)	carcmoB1015
Carg18798	Lsi02G027950	Bottle gourd (USVL1VR-Ls)	carlsiB684
Carg18798	Cp4.1LG02g14630	Cucurbita pepo (Zucchini)	carcpeB1053
Carg18798	Cp4.1LG17g05550	Cucurbita pepo (Zucchini)	carcpeB1051
Carg18798	Cp4.1LG12g08080	Cucurbita pepo (Zucchini)	carcpeB1049
Carg18798	Cp4.1LG03g13980	Cucurbita pepo (Zucchini)	carcpeB1054
Carg18798	CsGy7G019770	Cucumber (Gy14) v2	carcgybB0742
Carg18798	MELO3C030793.2	Melon (DHL92) v3.6.1	carmedB0755
Carg18798	MELO3C024244.2	Melon (DHL92) v3.6.1	carmedB0754
Carg18798	CsaV3_7G033310	Cucumber (Chinese Long) v3	carcucB0783
Carg18798	Cla97C09G164160	Watermelon (97103) v2	carwmbB0782
Carg18798	Bhi01G002643	Wax gourd	carwgoB0879
Carg18798	Bhi09G000130	Wax gourd	carwgoB0883

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18798	Carg06480	Silver-seed gourd	carcarB143
Carg18798	Carg04261	Silver-seed gourd	carcarB234
Carg18798	Carg09525	Silver-seed gourd	carcarB596

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18798	Silver-seed gourd	carcarB045
Carg18798	Silver-seed gourd	carcarB155
Carg18798	Cucumber (Gy14) v2	carcgybB0739
Carg18798	Cucurbita maxima (Rimu)	carcmaB1042
Carg18798	Cucurbita pepo (Zucchini)	carcpeB1052
Carg18798	Cucurbita pepo (Zucchini)	carcpeB1055
Carg18798	Wild cucumber (PI 183967)	carcpiB0777
Carg18798	Cucumber (Chinese Long) v3	carcucB0780
Carg18798	Bottle gourd (USVL1VR-Ls)	carlsiB685
Carg18798	Watermelon (97103) v1	carwmB0747
Carg18798	Watermelon (97103) v2	carwmbB0781
Carg18798	Watermelon (97103) v2	carwmbB0780