Cucsa.034690 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.034690
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V
Location	scaffold00444 : 586865 .. 587293 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTGAAGAGAAGGGAGAGGATCAGTTCATGGGCGTTAATGATGAGATGGTAGTGCACAGCGGTGGATGCCATTGCAAGAGAATAAGATGGGAAGTGGAAGCAGCAAGCAGTGTGATAGCTTGGGATTGCAACTGTTCAAATTGCTCCATGAGAGGCAATACACATTTCACTGTTCCTTCTAAACATTTTAAGCTTTTGGGAGACTCGGATGACTTCATTTCAACCTACACTTTTGGGACTCATACTGCAAAGCATACCTTTTGTAAAGTTTGTGGGATCACTTCTTTCTACCATTCACGCTCAACTCCAGATGGGGTTTCGGTGAGTTTCAGATGTGTTGATCCTGGCACTTTGGATCATGTTCAGATTATCAAGTTTGATGGTACAAATTGGGAGCAAGCTCATCATCATTTGACACAAAACTAG

mRNA sequence

GTTTTTGAAGAGAAGGGAGAGGATCAGTTCATGGGCGTTAATGATGAGATGGTAGTGCACAGCGGTGGATGCCATTGCAAGAGAATAAGATGGGAAGTGGAAGCAGCAAGCAGTGTGATAGCTTGGGATTGCAACTGTTCAAATTGCTCCATGAGAGGCAATACACATTTCACTGTTCCTTCTAAACATTTTAAGCTTTTGGGAGACTCGGATGACTTCATTTCAACCTACACTTTTGGGACTCATACTGCAAAGCATACCTTTTGTAAAGTTTGTGGGATCACTTCTTTCTACCATTCACGCTCAACTCCAGATGGGGTTTCGGTGAGTTTCAGATGTGTTGATCCTGGCACTTTGGATCATGTTCAGATTATCAAGTTTGATGGTACAAATTGGGAGCAAGCTCATCATCATTTGACACAAAACTAG

Coding sequence (CDS)

GTTTTTGAAGAGAAGGGAGAGGATCAGTTCATGGGCGTTAATGATGAGATGGTAGTGCACAGCGGTGGATGCCATTGCAAGAGAATAAGATGGGAAGTGGAAGCAGCAAGCAGTGTGATAGCTTGGGATTGCAACTGTTCAAATTGCTCCATGAGAGGCAATACACATTTCACTGTTCCTTCTAAACATTTTAAGCTTTTGGGAGACTCGGATGACTTCATTTCAACCTACACTTTTGGGACTCATACTGCAAAGCATACCTTTTGTAAAGTTTGTGGGATCACTTCTTTCTACCATTCACGCTCAACTCCAGATGGGGTTTCGGTGAGTTTCAGATGTGTTGATCCTGGCACTTTGGATCATGTTCAGATTATCAAGTTTGATGGTACAAATTGGGAGCAAGCTCATCATCATTTGACACAAAACTAG

Protein sequence

VFEEKGEDQFMGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQAHHHLTQN*

Homology

[Close]

BLAST of Cucsa.034690 vs. Swiss-Prot
Match: CENPV_MOUSE (Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-29
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 17  MVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIST 76
           +V H+GGCHC  +R+EV A++ +  +DCNCS C  + N HF VP+  FKLL  ++  I+T
Sbjct: 122 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITT 181

Query: 77  YTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQA 136
           YTF TH A+HTFCK CG+ SFY  RS P G  ++  C+D GT+  V   +F+G++WE+A
Sbjct: 182 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWERA 239

[Close]

BLAST of Cucsa.034690 vs. Swiss-Prot
Match: CENPV_HUMAN (Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-29
Identity = 57/119 (47.90%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 17  MVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIST 76
           +V H+GGCHC  +R+EV A++ +  +DCNCS C  + N HF VP+  FKLL  ++  I+T
Sbjct: 145 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-ITT 204

Query: 77  YTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQA 136
           YTF TH A+HTFCK CG+ SFY  RS P G  ++  C+D GT+  +   +F+G++WE+A
Sbjct: 205 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKA 262

[Close]

BLAST of Cucsa.034690 vs. TrEMBL
Match: A0A0A0KN47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410710 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-76
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 11  MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS 70
           MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS
Sbjct: 1   MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS 60

Query: 71  DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT 130
           DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT
Sbjct: 61  DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT 120

Query: 131 NWEQAHHHLTQN 143
           NWEQAHHHLTQN
Sbjct: 121 NWEQAHHHLTQN 132

[Close]

BLAST of Cucsa.034690 vs. TrEMBL
Match: A0A059BUT9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02876 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.9e-52
Identity = 87/124 (70.16%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 13  VNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDD 72
           +  E+++HSGGCHC+R+RWEVEA +SV+AW CNCS+CSMRGN HF VPS+ FKLLG+SD 
Sbjct: 1   MESELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLLGNSDQ 60

Query: 73  FISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNW 132
           +++TYTFGTHTAKHTFCKVCGITSFY  RS PDG++V++RCVDPGTL HV+I +FDG NW
Sbjct: 61  YLTTYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQFDGQNW 120

Query: 133 EQAH 137
           E ++
Sbjct: 121 ESSY 124

[Close]

BLAST of Cucsa.034690 vs. TrEMBL
Match: A0A0A0KE05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403060 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-51
Identity = 86/118 (72.88%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 16  EMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIS 75
           E+VVH GGCHCK++RW VEA +SV+AWDCNCSNC MR NTHF VP + FKLLGDS +F+S
Sbjct: 4   ELVVHHGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFVS 63

Query: 76  TYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWE 134
           TYTFG+HTAKHTFCK CGITSFYH RS PDGV+++F+CVDPGTL H+++ +FDG+NWE
Sbjct: 64  TYTFGSHTAKHTFCKNCGITSFYHPRSNPDGVAITFKCVDPGTLTHIEVRQFDGSNWE 121

[Close]

BLAST of Cucsa.034690 vs. TrEMBL
Match: U5FK86_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02700g PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 13  VNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDD 72
           +  +MV+H+GGCHC+R+RW V+A SSV+AW+CNCS+CSMRGNTHF VPS+ F+LLGDS +
Sbjct: 1   MESDMVIHNGGCHCRRVRWRVQAPSSVVAWNCNCSDCSMRGNTHFIVPSEKFELLGDSKE 60

Query: 73  FISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNW 132
           F++TYTFGTHTAKHTFCK CGITSFY  RS PDGV+V+FRCVDPGTL HV+I  +DG NW
Sbjct: 61  FLTTYTFGTHTAKHTFCKFCGITSFYIPRSNPDGVAVTFRCVDPGTLTHVEIKHYDGRNW 120

Query: 133 EQAHH 138
           E +++
Sbjct: 121 ESSYN 125

[Close]

BLAST of Cucsa.034690 vs. TrEMBL
Match: I3SET8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 89/127 (70.08%), Postives = 107/127 (84.25%), Query Frame = 1


Query: 11  MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS 70
           M    E VVH+GGCHCK +RW+V A SSV+AWDCNCSNC MR N HF VP+++F+LLGDS
Sbjct: 1   MDAETETVVHNGGCHCKSVRWKVLAPSSVVAWDCNCSNCYMRANNHFVVPAENFELLGDS 60

Query: 71  DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT 130
             FI+TYTFGTHTAKHTFCK+CGITSFY+ RS PDGV+VSFRCVDPGTL H++I  FDG 
Sbjct: 61  GKFITTYTFGTHTAKHTFCKICGITSFYYPRSNPDGVAVSFRCVDPGTLTHIEIRHFDGK 120

Query: 131 NWEQAHH 138
           NWE++++
Sbjct: 121 NWERSYN 127

[Close]

BLAST of Cucsa.034690 vs. TAIR10
Match: AT5G16940.1 (AT5G16940.1 carbon-sulfur lyases)

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-50
Identity = 82/124 (66.13%), Postives = 100/124 (80.65%), Query Frame = 1


Query: 13  VNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDD 72
           +  E++ H GGCHC +I+W V+AA SVIAW CNCS+CSMRGN HF VPS +F+LL DS D
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 73  FISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNW 132
           FI+TYTFGTHTAKHTFCKVCGITSFY  RS PDGV+V+ +CV  GTL H+++  +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 133 EQAH 137
           E +H
Sbjct: 121 EMSH 124

[Close]

BLAST of Cucsa.034690 vs. NCBI nr
Match: gi|700195853|gb|KGN51030.1| (hypothetical protein Csa_5G410710 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 4.4e-76
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 11  MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS 70
           MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS
Sbjct: 1   MGVNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDS 60

Query: 71  DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT 130
           DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT
Sbjct: 61  DDFISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGT 120

Query: 131 NWEQAHHHLTQN 143
           NWEQAHHHLTQN
Sbjct: 121 NWEQAHHHLTQN 132

[Close]

BLAST of Cucsa.034690 vs. NCBI nr
Match: gi|659129686|ref|XP_008464791.1| (PREDICTED: centromere protein V isoform X2 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-52
Identity = 87/123 (70.73%), Postives = 107/123 (86.99%), Query Frame = 1


Query: 16  EMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIS 75
           E+VVH+GGCHCK++RW VEA +SV+AWDCNCSNC MR NTHF VP + FKLLGDS +F+S
Sbjct: 4   ELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFVS 63

Query: 76  TYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQA 135
           TYTFG+HTAKHTFCK CGITSFY  RS PDGV+++F+CVDPGTL HV++ +FDG+NWE +
Sbjct: 64  TYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNWEAS 123

Query: 136 HHH 139
           + H
Sbjct: 124 YDH 126

[Close]

BLAST of Cucsa.034690 vs. NCBI nr
Match: gi|659129688|ref|XP_008464792.1| (PREDICTED: centromere protein V isoform X3 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-52
Identity = 87/123 (70.73%), Postives = 107/123 (86.99%), Query Frame = 1


Query: 16  EMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIS 75
           E+VVH+GGCHCK++RW VEA +SV+AWDCNCSNC MR NTHF VP + FKLLGDS +F+S
Sbjct: 4   ELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFVS 63

Query: 76  TYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQA 135
           TYTFG+HTAKHTFCK CGITSFY  RS PDGV+++F+CVDPGTL HV++ +FDG+NWE +
Sbjct: 64  TYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNWEAS 123

Query: 136 HHH 139
           + H
Sbjct: 124 YDH 126

[Close]

BLAST of Cucsa.034690 vs. NCBI nr
Match: gi|659129690|ref|XP_008464793.1| (PREDICTED: centromere protein V isoform X4 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-52
Identity = 87/123 (70.73%), Postives = 107/123 (86.99%), Query Frame = 1


Query: 16  EMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIS 75
           E+VVH+GGCHCK++RW VEA +SV+AWDCNCSNC MR NTHF VP + FKLLGDS +F+S
Sbjct: 4   ELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFVS 63

Query: 76  TYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQA 135
           TYTFG+HTAKHTFCK CGITSFY  RS PDGV+++F+CVDPGTL HV++ +FDG+NWE +
Sbjct: 64  TYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNWEAS 123

Query: 136 HHH 139
           + H
Sbjct: 124 YDH 126

[Close]

BLAST of Cucsa.034690 vs. NCBI nr
Match: gi|659129684|ref|XP_008464790.1| (PREDICTED: centromere protein V isoform X1 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-52
Identity = 87/123 (70.73%), Postives = 107/123 (86.99%), Query Frame = 1


Query: 16  EMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFIS 75
           E+VVH+GGCHCK++RW VEA +SV+AWDCNCSNC MR NTHF VP + FKLLGDS +F+S
Sbjct: 4   ELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFVS 63

Query: 76  TYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQA 135
           TYTFG+HTAKHTFCK CGITSFY  RS PDGV+++F+CVDPGTL HV++ +FDG+NWE +
Sbjct: 64  TYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNWEAS 123

Query: 136 HHH 139
           + H
Sbjct: 124 YDH 126

The following BLAST results are available for this feature:

BLAST of Cucsa.034690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CENPV_MOUSE	1.1e-29	48.74	Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2	[more]
CENPV_HUMAN	3.1e-29	47.90	Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1	[more]

BLAST of Cucsa.034690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN47_CUCSA	3.1e-76	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410710 PE=4 SV=1	[more]
A0A059BUT9_EUCGR	6.9e-52	70.16	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02876 PE=4 SV=1	[more]
A0A0A0KE05_CUCSA	1.2e-51	72.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403060 PE=4 SV=1	[more]
U5FK86_POPTR	1.5e-51	69.60	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02700g PE=4 SV=1	[more]
I3SET8_LOTJA	1.5e-51	70.08	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cucsa.034690 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16940.1	2.0e-50	66.13	carbon-sulfur lyases	[more]

BLAST of Cucsa.034690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195853\|gb\|KGN51030.1\|	4.4e-76	100.00	hypothetical protein Csa_5G410710 [Cucumis sativus]	[more]
gi\|659129686\|ref\|XP_008464791.1\|	5.8e-52	70.73	PREDICTED: centromere protein V isoform X2 [Cucumis melo]	[more]
gi\|659129688\|ref\|XP_008464792.1\|	5.8e-52	70.73	PREDICTED: centromere protein V isoform X3 [Cucumis melo]	[more]
gi\|659129690\|ref\|XP_008464793.1\|	5.8e-52	70.73	PREDICTED: centromere protein V isoform X4 [Cucumis melo]	[more]
gi\|659129684\|ref\|XP_008464790.1\|	5.8e-52	70.73	PREDICTED: centromere protein V isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006913	GFA/CENP-V
IPR011057	Mss4-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016846	carbon-sulfur lyase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016846	carbon-sulfur lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.034690.1	Cucsa.034690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	GENE3D	G3DSA:3.90.1590.10		coord: 14..115 score: 2.8
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	PFAM	PF04828	GFA	coord: 43..132 score: 3.
IPR011057	Mss4-like	unknown	SSF51316	Mss4-like	coord: 11..116 score: 3.45
None	No IPR available	PANTHER	PTHR28620	FAMILY NOT NAMED	coord: 15..135 score: 1.7
None	No IPR available	PANTHER	PTHR28620:SF1	PROTEIN F25B4.8, ISOFORM A	coord: 15..135 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.034690	Cla019779	Watermelon (97103) v1	cgywmB010
Cucsa.034690	Csa5G410710	Cucumber (Chinese Long) v2	cgycuB007
Cucsa.034690	MELO3C022822	Melon (DHL92) v3.5.1	cgymeB007
Cucsa.034690	ClCG03G008860	Watermelon (Charleston Gray)	cgywcgB009
Cucsa.034690	CSPI05G14770	Wild cucumber (PI 183967)	cgycpiB007
Cucsa.034690	CmaCh04G023070	Cucurbita maxima (Rimu)	cgycmaB0020
Cucsa.034690	CmoCh04G024100	Cucurbita moschata (Rifu)	cgycmoB0019
Cucsa.034690	Lsi09G009460	Bottle gourd (USVL1VR-Ls)	cgylsiB008
Cucsa.034690	MELO3C022822.2	Melon (DHL92) v3.6.1	cgymedB009
Cucsa.034690	CsaV3_5G023900	Cucumber (Chinese Long) v3	cgycucB010
Cucsa.034690	Cla97C03G060040	Watermelon (97103) v2	cgywmbB009
Cucsa.034690	Bhi12G001090	Wax gourd	cgywgoB009
Cucsa.034690	Carg18257	Silver-seed gourd	carcgyB0604

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.034690	Cucurbita pepo (Zucchini)	cgycpeB0017
Cucsa.034690	Cucurbita pepo (Zucchini)	cgycpeB0018
Cucsa.034690	Silver-seed gourd	carcgyB0941
Cucsa.034690	Cucurbita maxima (Rimu)	cgycmaB0019
Cucsa.034690	Cucurbita moschata (Rifu)	cgycmoB0018