Cla019779 (gene) Watermelon (97103) v1

NameCla019779
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGlutathione-dependent formaldehyde-activating GFA (AHRD V1 ***- B7K8C4_CYAP7); contains Interpro domain(s) IPR006913 Glutathione-dependent formaldehyde-activating, GFA
LocationChr3 : 10511808 .. 10512215 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTGATAAGATGGTTGTGCACAGTGGTGGATGCCACTGCAAGAGAATAAGATGGGAAGTGAAAGCAGGAAGCAGTGTCACAGCTTGGGATTGCAACTGTTCAAACTGCTCCATGAGAGGGAATACACATTTCACTGTGCCTTCTCAACATTTTAAGCTTTTGGGAGAGTCAGACAAGTTTATTACAACCTACACTTTTGGGACTCATACTGCAAACCACACATTTTGCAAAGTTTGTGGGATCACTTCCTTTTATCATTCACGCTCAACCCCAGATGGGGTTTCTGTTAGTTTCAGATGTGTTGATCCAGGCACCTTGGATCATGTTCAGATTAACAAGTTTGATGGTGCAAATTGGGAGCAAGCTCATCATCTTCATCATTCTAATTTGTCAAACAACTAG

mRNA sequence

ATGGATTGTGATAAGATGGTTGTGCACAGTGGTGGATGCCACTGCAAGAGAATAAGATGGGAAGTGAAAGCAGGAAGCAGTGTCACAGCTTGGGATTGCAACTGTTCAAACTGCTCCATGAGAGGGAATACACATTTCACTGTGCCTTCTCAACATTTTAAGCTTTTGGGAGAGTCAGACAAGTTTATTACAACCTACACTTTTGGGACTCATACTGCAAACCACACATTTTGCAAAGTTTGTGGGATCACTTCCTTTTATCATTCACGCTCAACCCCAGATGGGGTTTCTGTTAGTTTCAGATGTGTTGATCCAGGCACCTTGGATCATGTTCAGATTAACAAGTTTGATGGTGCAAATTGGGAGCAAGCTCATCATCTTCATCATTCTAATTTGTCAAACAACTAG

Coding sequence (CDS)

ATGGATTGTGATAAGATGGTTGTGCACAGTGGTGGATGCCACTGCAAGAGAATAAGATGGGAAGTGAAAGCAGGAAGCAGTGTCACAGCTTGGGATTGCAACTGTTCAAACTGCTCCATGAGAGGGAATACACATTTCACTGTGCCTTCTCAACATTTTAAGCTTTTGGGAGAGTCAGACAAGTTTATTACAACCTACACTTTTGGGACTCATACTGCAAACCACACATTTTGCAAAGTTTGTGGGATCACTTCCTTTTATCATTCACGCTCAACCCCAGATGGGGTTTCTGTTAGTTTCAGATGTGTTGATCCAGGCACCTTGGATCATGTTCAGATTAACAAGTTTGATGGTGCAAATTGGGAGCAAGCTCATCATCTTCATCATTCTAATTTGTCAAACAACTAG

Protein sequence

MDCDKMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFITTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQAHHLHHSNLSNN
BLAST of Cla019779 vs. Swiss-Prot
Match: CENPV_MOUSE (Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1

Query: 6   MVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFITT 65
           +V H+GGCHC  +R+EV A + +  +DCNCS C  + N HF VP+  FKLL  ++  ITT
Sbjct: 122 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITT 181

Query: 66  YTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQAH 125
           YTF TH A HTFCK CG+ SFY  RS P G  ++  C+D GT+  V   +F+G++WE+A 
Sbjct: 182 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWERAM 241

Query: 126 HLH 129
             H
Sbjct: 242 KEH 243

BLAST of Cla019779 vs. Swiss-Prot
Match: CENPV_HUMAN (Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-30
Identity = 59/123 (47.97%), Postives = 79/123 (64.23%), Query Frame = 1

Query: 6   MVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFITT 65
           +V H+GGCHC  +R+EV A + +  +DCNCS C  + N HF VP+  FKLL +  + ITT
Sbjct: 145 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLL-KGAEHITT 204

Query: 66  YTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQAH 125
           YTF TH A HTFCK CG+ SFY  RS P G  ++  C+D GT+  +   +F+G++WE+A 
Sbjct: 205 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKAM 264

Query: 126 HLH 129
             H
Sbjct: 265 KEH 266

BLAST of Cla019779 vs. TrEMBL
Match: A0A0A0KN47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410710 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 1

Query: 4   DKMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFI 63
           D+MVVHSGGCHCKRIRWEV+A SSV AWDCNCSNCSMRGNTHFTVPS+HFKLLG+SD FI
Sbjct: 5   DEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFI 64

Query: 64  TTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQ 123
           +TYTFGTHTA HTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQI KFDG NWEQ
Sbjct: 65  STYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQ 124

Query: 124 AHH 127
           AHH
Sbjct: 125 AHH 127

BLAST of Cla019779 vs. TrEMBL
Match: I3SET8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.2e-51
Identity = 89/127 (70.08%), Postives = 108/127 (85.04%), Query Frame = 1

Query: 1   MDCD-KMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGES 60
           MD + + VVH+GGCHCK +RW+V A SSV AWDCNCSNC MR N HF VP+++F+LLG+S
Sbjct: 1   MDAETETVVHNGGCHCKSVRWKVLAPSSVVAWDCNCSNCYMRANNHFVVPAENFELLGDS 60

Query: 61  DKFITTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGA 120
            KFITTYTFGTHTA HTFCK+CGITSFY+ RS PDGV+VSFRCVDPGTL H++I  FDG 
Sbjct: 61  GKFITTYTFGTHTAKHTFCKICGITSFYYPRSNPDGVAVSFRCVDPGTLTHIEIRHFDGK 120

Query: 121 NWEQAHH 127
           NWE++++
Sbjct: 121 NWERSYN 127

BLAST of Cla019779 vs. TrEMBL
Match: A0A0B2PMN5_GLYSO (Centromere protein V OS=Glycine soja GN=glysoja_032212 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.5e-51
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 1

Query: 1   MDCDKMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESD 60
           MD +K VVH+GGCHCK +RW+V A SSV AWDCNCS C MR NTHF VP+ +F+LLG+S+
Sbjct: 1   MDAEK-VVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSE 60

Query: 61  KFITTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGAN 120
           KF+TTYTF THTA HTFCK+CGITSFYH RS PDGV+V+FRCVDPGTL HV+I  FDG N
Sbjct: 61  KFLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKN 120

Query: 121 WEQAHH 127
           W+ A++
Sbjct: 121 WDSAYN 125

BLAST of Cla019779 vs. TrEMBL
Match: I1MZF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G041500 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.5e-51
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 1

Query: 1   MDCDKMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESD 60
           MD +K VVH+GGCHCK +RW+V A SSV AWDCNCS C MR NTHF VP+ +F+LLG+S+
Sbjct: 1   MDAEK-VVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSE 60

Query: 61  KFITTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGAN 120
           KF+TTYTF THTA HTFCK+CGITSFYH RS PDGV+V+FRCVDPGTL HV+I  FDG N
Sbjct: 61  KFLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKN 120

Query: 121 WEQAHH 127
           W+ A++
Sbjct: 121 WDSAYN 125

BLAST of Cla019779 vs. TrEMBL
Match: A0A059BUT9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02876 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.4e-51
Identity = 85/121 (70.25%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 5   KMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFIT 64
           ++++HSGGCHC+R+RWEV+A +SV AW CNCS+CSMRGN HF VPS+ FKLLG SD+++T
Sbjct: 4   ELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLLGNSDQYLT 63

Query: 65  TYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQA 124
           TYTFGTHTA HTFCKVCGITSFY  RS PDG++V++RCVDPGTL HV+I +FDG NWE +
Sbjct: 64  TYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQFDGQNWESS 123

Query: 125 H 126
           +
Sbjct: 124 Y 124

BLAST of Cla019779 vs. NCBI nr
Match: gi|700195853|gb|KGN51030.1| (hypothetical protein Csa_5G410710 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 112/123 (91.06%), Postives = 117/123 (95.12%), Query Frame = 1

Query: 4   DKMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFI 63
           D+MVVHSGGCHCKRIRWEV+A SSV AWDCNCSNCSMRGNTHFTVPS+HFKLLG+SD FI
Sbjct: 5   DEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDDFI 64

Query: 64  TTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQ 123
           +TYTFGTHTA HTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQI KFDG NWEQ
Sbjct: 65  STYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNWEQ 124

Query: 124 AHH 127
           AHH
Sbjct: 125 AHH 127

BLAST of Cla019779 vs. NCBI nr
Match: gi|1021494247|ref|XP_016190113.1| (PREDICTED: centromere protein V [Arachis ipaensis])

HSP 1 Score: 209.5 bits (532), Expect = 3.6e-51
Identity = 88/116 (75.86%), Postives = 102/116 (87.93%), Query Frame = 1

Query: 7   VVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFITTY 66
           VVH+GGCHCK +RW+V A SS+ AWDCNCS+CSMRGNTHF VP+ +F+LLGES KFITTY
Sbjct: 6   VVHTGGCHCKSVRWKVVAPSSIVAWDCNCSDCSMRGNTHFVVPAVNFQLLGESSKFITTY 65

Query: 67  TFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWE 123
           TFGTHTA HTFCK+CGI+SFYH RS PDGV+V+FRCVDPGTL HV++ K DG NWE
Sbjct: 66  TFGTHTAKHTFCKICGISSFYHPRSNPDGVAVTFRCVDPGTLTHVEVRKADGKNWE 121

BLAST of Cla019779 vs. NCBI nr
Match: gi|388501428|gb|AFK38780.1| (unknown [Lotus japonicus])

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-51
Identity = 89/127 (70.08%), Postives = 108/127 (85.04%), Query Frame = 1

Query: 1   MDCD-KMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGES 60
           MD + + VVH+GGCHCK +RW+V A SSV AWDCNCSNC MR N HF VP+++F+LLG+S
Sbjct: 1   MDAETETVVHNGGCHCKSVRWKVLAPSSVVAWDCNCSNCYMRANNHFVVPAENFELLGDS 60

Query: 61  DKFITTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGA 120
            KFITTYTFGTHTA HTFCK+CGITSFY+ RS PDGV+VSFRCVDPGTL H++I  FDG 
Sbjct: 61  GKFITTYTFGTHTAKHTFCKICGITSFYYPRSNPDGVAVSFRCVDPGTLTHIEIRHFDGK 120

Query: 121 NWEQAHH 127
           NWE++++
Sbjct: 121 NWERSYN 127

BLAST of Cla019779 vs. NCBI nr
Match: gi|734338422|gb|KHN08797.1| (Centromere protein V [Glycine soja])

HSP 1 Score: 208.4 bits (529), Expect = 7.9e-51
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 1

Query: 1   MDCDKMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESD 60
           MD +K VVH+GGCHCK +RW+V A SSV AWDCNCS C MR NTHF VP+ +F+LLG+S+
Sbjct: 1   MDAEK-VVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSE 60

Query: 61  KFITTYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGAN 120
           KF+TTYTF THTA HTFCK+CGITSFYH RS PDGV+V+FRCVDPGTL HV+I  FDG N
Sbjct: 61  KFLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKN 120

Query: 121 WEQAHH 127
           W+ A++
Sbjct: 121 WDSAYN 125

BLAST of Cla019779 vs. NCBI nr
Match: gi|702374682|ref|XP_010062288.1| (PREDICTED: centromere protein V-like isoform X3 [Eucalyptus grandis])

HSP 1 Score: 207.6 bits (527), Expect = 1.4e-50
Identity = 85/121 (70.25%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 5   KMVVHSGGCHCKRIRWEVKAGSSVTAWDCNCSNCSMRGNTHFTVPSQHFKLLGESDKFIT 64
           ++++HSGGCHC+R+RWEV+A +SV AW CNCS+CSMRGN HF VPS+ FKLLG SD+++T
Sbjct: 4   ELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLLGNSDQYLT 63

Query: 65  TYTFGTHTANHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQINKFDGANWEQA 124
           TYTFGTHTA HTFCKVCGITSFY  RS PDG++V++RCVDPGTL HV+I +FDG NWE +
Sbjct: 64  TYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQFDGQNWESS 123

Query: 125 H 126
           +
Sbjct: 124 Y 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CENPV_MOUSE1.6e-3048.78Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2[more]
CENPV_HUMAN3.5e-3047.97Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KN47_CUCSA1.5e-6491.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410710 PE=4 SV=1[more]
I3SET8_LOTJA4.2e-5170.08Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0B2PMN5_GLYSO5.5e-5170.63Centromere protein V OS=Glycine soja GN=glysoja_032212 PE=4 SV=1[more]
I1MZF8_SOYBN5.5e-5170.63Uncharacterized protein OS=Glycine max GN=GLYMA_18G041500 PE=4 SV=1[more]
A0A059BUT9_EUCGR9.4e-5170.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02876 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700195853|gb|KGN51030.1|2.2e-6491.06hypothetical protein Csa_5G410710 [Cucumis sativus][more]
gi|1021494247|ref|XP_016190113.1|3.6e-5175.86PREDICTED: centromere protein V [Arachis ipaensis][more]
gi|388501428|gb|AFK38780.1|6.1e-5170.08unknown [Lotus japonicus][more]
gi|734338422|gb|KHN08797.1|7.9e-5170.63Centromere protein V [Glycine soja][more]
gi|702374682|ref|XP_010062288.1|1.4e-5070.25PREDICTED: centromere protein V-like isoform X3 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006913GFA/CENP-V
IPR011057Mss4-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016846carbon-sulfur lyase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016846 carbon-sulfur lyase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019779Cla019779.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006913Glutathione-dependent formaldehyde-activating enzyme/centromere protein VGENE3DG3DSA:3.90.1590.10coord: 6..104
score: 2.3
IPR006913Glutathione-dependent formaldehyde-activating enzyme/centromere protein VPFAMPF04828GFAcoord: 32..115
score: 3.
IPR011057Mss4-likeunknownSSF51316Mss4-likecoord: 6..107
score: 2.2
NoneNo IPR availablePANTHERPTHR28620FAMILY NOT NAMEDcoord: 1..124
score: 2.4
NoneNo IPR availablePANTHERPTHR28620:SF1PROTEIN F25B4.8, ISOFORM Acoord: 1..124
score: 2.4