CmoCh04G024100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G024100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Carbon-sulfur lyase
Location	Cmo_Chr04 : 17936113 .. 17936604 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGAAACACTCCACGAAGCAATTTAATGTCACCTCACCTGTCACGAGTTTTTGTCCATATAAACCATGGGATAAGATCAGTGTTAATCAACAAACAATGGGTTCCAAGATGGTAATACACAAAGGCGGCTGCCACTGCAAGAGAGTAAGATGGGAGGTGGAAGCAGCGGCCAGTGTGACAGCTTGGGAGTGCAATTGTTCGGACTGCTGCATGAGAGGCAACACCCATTTCACTGTGCCGGCTGCAAGGTTCAAGCTTTTAGGAGACTCCGACAAGTTCGTTTCCACCTACACTTTTGGGACCCATATTGCCAACCACACGTTTTGCAAAGTTTGTGGGATCACTTCCTTTTACCATTCGCGATCAACCCCAGATGGGGTTTCGGTTACTTTTAGATGTGTTGATCCTGGGACGTTGGCCCATGTTGAGATTAAGAAGTTTGATGGCAAAAATTGGGAGGCAGCTCATCGTCGTCAACGATCATGA

mRNA sequence

ATGGGTTGGAAACACTCCACGAAGCAATTTAATGTCACCTCACCTGTCACGAGTTTTTGTCCATATAAACCATGGGATAAGATCAGTGTTAATCAACAAACAATGGGTTCCAAGATGGTAATACACAAAGGCGGCTGCCACTGCAAGAGAGTAAGATGGGAGGTGGAAGCAGCGGCCAGTGTGACAGCTTGGGAGTGCAATTGTTCGGACTGCTGCATGAGAGGCAACACCCATTTCACTGTGCCGGCTGCAAGGTTCAAGCTTTTAGGAGACTCCGACAAGTTCGTTTCCACCTACACTTTTGGGACCCATATTGCCAACCACACGTTTTGCAAAGTTTGTGGGATCACTTCCTTTTACCATTCGCGATCAACCCCAGATGGGGTTTCGGTTACTTTTAGATGTGTTGATCCTGGGACGTTGGCCCATGTTGAGATTAAGAAGTTTGATGGCAAAAATTGGGAGGCAGCTCATCGTCGTCAACGATCATGA

Coding sequence (CDS)

ATGGGTTGGAAACACTCCACGAAGCAATTTAATGTCACCTCACCTGTCACGAGTTTTTGTCCATATAAACCATGGGATAAGATCAGTGTTAATCAACAAACAATGGGTTCCAAGATGGTAATACACAAAGGCGGCTGCCACTGCAAGAGAGTAAGATGGGAGGTGGAAGCAGCGGCCAGTGTGACAGCTTGGGAGTGCAATTGTTCGGACTGCTGCATGAGAGGCAACACCCATTTCACTGTGCCGGCTGCAAGGTTCAAGCTTTTAGGAGACTCCGACAAGTTCGTTTCCACCTACACTTTTGGGACCCATATTGCCAACCACACGTTTTGCAAAGTTTGTGGGATCACTTCCTTTTACCATTCGCGATCAACCCCAGATGGGGTTTCGGTTACTTTTAGATGTGTTGATCCTGGGACGTTGGCCCATGTTGAGATTAAGAAGTTTGATGGCAAAAATTGGGAGGCAGCTCATCGTCGTCAACGATCATGA

Homology

[Close]

BLAST of CmoCh04G024100 vs. Swiss-Prot
Match: CENPV_MOUSE (Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 39  MVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDKFVST 98
           +V H GGCHC  VR+EV A+A +  ++CNCS C  + N HF VPA+RFKLL  ++  ++T
Sbjct: 122 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITT 181

Query: 99  YTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNWEAAH 158
           YTF TH A HTFCK CG+ SFY  RS P G  +   C+D GT+  V  ++F+G +WE A 
Sbjct: 182 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWERAM 241

Query: 159 RRQRS 164
           +  ++
Sbjct: 242 KEHKT 245

[Close]

BLAST of CmoCh04G024100 vs. Swiss-Prot
Match: CENPV_HUMAN (Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.2e-30
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1


Query: 39  MVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDKFVST 98
           +V H GGCHC  VR+EV A+A +  ++CNCS C  + N HF VPA+RFKLL  ++  ++T
Sbjct: 145 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAEH-ITT 204

Query: 99  YTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNWEAAH 158
           YTF TH A HTFCK CG+ SFY  RS P G  +   C+D GT+  +  ++F+G +WE A 
Sbjct: 205 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKAM 264

Query: 159 RRQRS 164
           +  ++
Sbjct: 265 KEHKT 268

[Close]

BLAST of CmoCh04G024100 vs. TrEMBL
Match: A0A0A0KN47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410710 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-58
Identity = 99/124 (79.84%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           +  +MV+H GGCHCKR+RWEVEAA+SV AW+CNCS+C MRGNTHFTVP+  FKLLGDSD 
Sbjct: 3   VNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDD 62

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           F+STYTFGTH A HTFCKVCGITSFYHSRSTPDGVSV+FRCVDPGTL HV+I KFDG NW
Sbjct: 63  FISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNW 122

Query: 155 EAAH 159
           E AH
Sbjct: 123 EQAH 126

[Close]

BLAST of CmoCh04G024100 vs. TrEMBL
Match: A0A059BUT9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02876 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.5e-54
Identity = 90/124 (72.58%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           M S++++H GGCHC+RVRWEVEA  SV AW+CNCSDC MRGN HF VP+ RFKLLG+SD+
Sbjct: 1   MESELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLLGNSDQ 60

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           +++TYTFGTH A HTFCKVCGITSFY  RS PDG++VT+RCVDPGTLAHVEIK+FDG+NW
Sbjct: 61  YLTTYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQFDGQNW 120

Query: 155 EAAH 159
           E+++
Sbjct: 121 ESSY 124

[Close]

BLAST of CmoCh04G024100 vs. TrEMBL
Match: A0A0A0KE05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403060 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           M S++V+H GGCHCK+VRW VEA ASV AW+CNCS+C MR NTHF VP  RFKLLGDS  
Sbjct: 1   MASELVVHHGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           FVSTYTFG+H A HTFCK CGITSFYH RS PDGV++TF+CVDPGTL H+E+++FDG NW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYHPRSNPDGVAITFKCVDPGTLTHIEVRQFDGSNW 120

Query: 155 EAA 158
           EA+
Sbjct: 121 EAS 123

[Close]

BLAST of CmoCh04G024100 vs. TrEMBL
Match: W9RKQ0_9ROSA (Centromere protein V OS=Morus notabilis GN=L484_004950 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 87/120 (72.50%), Postives = 107/120 (89.17%), Query Frame = 1


Query: 39  MVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDKFVST 98
           +V+H GGCHC++V+W V+A  SV AW+C+CSDC MRGNTHF VPA+RF+LLGDS++FV+T
Sbjct: 5   LVMHSGGCHCRKVKWRVQAPKSVVAWDCDCSDCAMRGNTHFIVPASRFQLLGDSERFVTT 64

Query: 99  YTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNWEAAH 158
           YTFG+H A HTFCKVCGITSFY  RS PDGVSVTFRCVDPGTL HVE+++FDGKNWE+++
Sbjct: 65  YTFGSHTAKHTFCKVCGITSFYRPRSNPDGVSVTFRCVDPGTLVHVEVRRFDGKNWESSY 124

[Close]

BLAST of CmoCh04G024100 vs. TrEMBL
Match: A0A059BTH5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02877 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53
Identity = 87/124 (70.16%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           M S++++H GGCHC++VRWE+EA  SV AWECNCSDC MRGN +F VP+ RFKLLG+SD+
Sbjct: 1   MESELLLHSGGCHCRKVRWEIEAPTSVVAWECNCSDCSMRGNINFVVPSERFKLLGNSDQ 60

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           +++TYTFGTH A HTFCKVCGITSFY  RS PDG++VT+RCVDPGTLAHVEIK++DG+NW
Sbjct: 61  YLTTYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQYDGQNW 120

Query: 155 EAAH 159
           E+++
Sbjct: 121 ESSY 124

[Close]

BLAST of CmoCh04G024100 vs. TAIR10
Match: AT5G16940.1 (AT5G16940.1 carbon-sulfur lyases)

HSP 1 Score: 198.4 bits (503), Expect = 3.5e-51
Identity = 80/126 (63.49%), Postives = 102/126 (80.95%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           M S+++ H+GGCHC +++W V+AA SV AW CNCSDC MRGN HF VP++ F+LL DS  
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           F++TYTFGTH A HTFCKVCGITSFY  RS PDGV+VT +CV  GTLAH+E+K +DG+NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 155 EAAHRR 161
           E +H++
Sbjct: 121 EMSHKK 126

[Close]

BLAST of CmoCh04G024100 vs. NCBI nr
Match: gi|700195853|gb|KGN51030.1| (hypothetical protein Csa_5G410710 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 6.2e-58
Identity = 99/124 (79.84%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           +  +MV+H GGCHCKR+RWEVEAA+SV AW+CNCS+C MRGNTHFTVP+  FKLLGDSD 
Sbjct: 3   VNDEMVVHSGGCHCKRIRWEVEAASSVIAWDCNCSNCSMRGNTHFTVPSKHFKLLGDSDD 62

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           F+STYTFGTH A HTFCKVCGITSFYHSRSTPDGVSV+FRCVDPGTL HV+I KFDG NW
Sbjct: 63  FISTYTFGTHTAKHTFCKVCGITSFYHSRSTPDGVSVSFRCVDPGTLDHVQIIKFDGTNW 122

Query: 155 EAAH 159
           E AH
Sbjct: 123 EQAH 126

[Close]

BLAST of CmoCh04G024100 vs. NCBI nr
Match: gi|702374676|ref|XP_010062287.1| (PREDICTED: centromere protein V-like isoform X2 [Eucalyptus grandis])

HSP 1 Score: 218.8 bits (556), Expect = 7.1e-54
Identity = 90/129 (69.77%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 30  VNQQTMGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLL 89
           + +  M S++++H GGCHC+RVRWEVEA  SV AW+CNCSDC MRGN HF VP+ RFKLL
Sbjct: 31  LGRAVMESELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLL 90

Query: 90  GDSDKFVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKF 149
           G+SD++++TYTFGTH A HTFCKVCGITSFY  RS PDG++VT+RCVDPGTLAHVEIK+F
Sbjct: 91  GNSDQYLTTYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQF 150

Query: 150 DGKNWEAAH 159
           DG+NWE+++
Sbjct: 151 DGQNWESSY 159

[Close]

BLAST of CmoCh04G024100 vs. NCBI nr
Match: gi|702374670|ref|XP_010062286.1| (PREDICTED: centromere protein V-like isoform X1 [Eucalyptus grandis])

HSP 1 Score: 218.8 bits (556), Expect = 7.1e-54
Identity = 90/129 (69.77%), Postives = 112/129 (86.82%), Query Frame = 1


Query: 30  VNQQTMGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLL 89
           + +  M S++++H GGCHC+RVRWEVEA  SV AW+CNCSDC MRGN HF VP+ RFKLL
Sbjct: 39  LGRAVMESELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLL 98

Query: 90  GDSDKFVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKF 149
           G+SD++++TYTFGTH A HTFCKVCGITSFY  RS PDG++VT+RCVDPGTLAHVEIK+F
Sbjct: 99  GNSDQYLTTYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQF 158

Query: 150 DGKNWEAAH 159
           DG+NWE+++
Sbjct: 159 DGQNWESSY 167

[Close]

BLAST of CmoCh04G024100 vs. NCBI nr
Match: gi|702374682|ref|XP_010062288.1| (PREDICTED: centromere protein V-like isoform X3 [Eucalyptus grandis])

HSP 1 Score: 218.4 bits (555), Expect = 9.3e-54
Identity = 90/124 (72.58%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           M S++++H GGCHC+RVRWEVEA  SV AW+CNCSDC MRGN HF VP+ RFKLLG+SD+
Sbjct: 1   MESELLLHSGGCHCRRVRWEVEAPTSVVAWKCNCSDCSMRGNIHFIVPSERFKLLGNSDQ 60

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           +++TYTFGTH A HTFCKVCGITSFY  RS PDG++VT+RCVDPGTLAHVEIK+FDG+NW
Sbjct: 61  YLTTYTFGTHTAKHTFCKVCGITSFYKPRSNPDGIAVTYRCVDPGTLAHVEIKQFDGQNW 120

Query: 155 EAAH 159
           E+++
Sbjct: 121 ESSY 124

[Close]

BLAST of CmoCh04G024100 vs. NCBI nr
Match: gi|778715899|ref|XP_004146757.2| (PREDICTED: centromere protein V [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 6.0e-53
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 1


Query: 35  MGSKMVIHKGGCHCKRVRWEVEAAASVTAWECNCSDCCMRGNTHFTVPAARFKLLGDSDK 94
           M S++V+H GGCHCK+VRW VEA ASV AW+CNCS+C MR NTHF VP  RFKLLGDS  
Sbjct: 1   MASELVVHHGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 95  FVSTYTFGTHIANHTFCKVCGITSFYHSRSTPDGVSVTFRCVDPGTLAHVEIKKFDGKNW 154
           FVSTYTFG+H A HTFCK CGITSFYH RS PDGV++TF+CVDPGTL H+E+++FDG NW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYHPRSNPDGVAITFKCVDPGTLTHIEVRQFDGSNW 120

Query: 155 EAA 158
           EA+
Sbjct: 121 EAS 123

The following BLAST results are available for this feature:

BLAST of CmoCh04G024100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CENPV_MOUSE	1.4e-30	48.00	Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2	[more]
CENPV_HUMAN	4.2e-30	47.20	Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1	[more]

BLAST of CmoCh04G024100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN47_CUCSA	4.3e-58	79.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410710 PE=4 SV=1	[more]
A0A059BUT9_EUCGR	6.5e-54	72.58	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02876 PE=4 SV=1	[more]
A0A0A0KE05_CUCSA	4.2e-53	72.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403060 PE=4 SV=1	[more]
W9RKQ0_9ROSA	7.1e-53	72.50	Centromere protein V OS=Morus notabilis GN=L484_004950 PE=4 SV=1	[more]
A0A059BTH5_EUCGR	7.1e-53	70.16	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02877 PE=4 SV=1	[more]

BLAST of CmoCh04G024100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16940.1	3.5e-51	63.49	carbon-sulfur lyases	[more]

BLAST of CmoCh04G024100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195853\|gb\|KGN51030.1\|	6.2e-58	79.84	hypothetical protein Csa_5G410710 [Cucumis sativus]	[more]
gi\|702374676\|ref\|XP_010062287.1\|	7.1e-54	69.77	PREDICTED: centromere protein V-like isoform X2 [Eucalyptus grandis]	[more]
gi\|702374670\|ref\|XP_010062286.1\|	7.1e-54	69.77	PREDICTED: centromere protein V-like isoform X1 [Eucalyptus grandis]	[more]
gi\|702374682\|ref\|XP_010062288.1\|	9.3e-54	72.58	PREDICTED: centromere protein V-like isoform X3 [Eucalyptus grandis]	[more]
gi\|778715899\|ref\|XP_004146757.2\|	6.0e-53	72.36	PREDICTED: centromere protein V [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006913	GFA/CENP-V
IPR011057	Mss4-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016846	carbon-sulfur lyase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016846	carbon-sulfur lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024100.1	CmoCh04G024100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	GENE3D	G3DSA:3.90.1590.10		coord: 29..138 score: 2.1
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	PFAM	PF04828	GFA	coord: 65..139 score: 5.
IPR011057	Mss4-like	unknown	SSF51316	Mss4-like	coord: 22..138 score: 6.17
None	No IPR available	PANTHER	PTHR28620	FAMILY NOT NAMED	coord: 39..157 score: 7.9
None	No IPR available	PANTHER	PTHR28620:SF1	PROTEIN F25B4.8, ISOFORM A	coord: 39..157 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G024100	Cucsa.034690	Cucumber (Gy14) v1	cgycmoB0019
CmoCh04G024100	CmaCh04G023070	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G024100	Cla019779	Watermelon (97103) v1	cmowmB667
CmoCh04G024100	Csa5G410710	Cucumber (Chinese Long) v2	cmocuB740
CmoCh04G024100	MELO3C022822	Melon (DHL92) v3.5.1	cmomeB626
CmoCh04G024100	ClCG03G008860	Watermelon (Charleston Gray)	cmowcgB647
CmoCh04G024100	CSPI05G14770	Wild cucumber (PI 183967)	cmocpiB749
CmoCh04G024100	Lsi09G009460	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G024100	MELO3C022822.2	Melon (DHL92) v3.6.1	cmomedB715
CmoCh04G024100	CsaV3_5G023900	Cucumber (Chinese Long) v3	cmocucB0876
CmoCh04G024100	Cla97C03G060040	Watermelon (97103) v2	cmowmbB719
CmoCh04G024100	Bhi12G001090	Wax gourd	cmowgoB0822
CmoCh04G024100	CsGy5G014660	Cucumber (Gy14) v2	cgybcmoB654
CmoCh04G024100	Carg18257	Silver-seed gourd	carcmoB0716

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G024100	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G024100	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G024100	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G024100	Silver-seed gourd	carcmoB1121
CmoCh04G024100	Cucurbita moschata (Rifu)	cmocmoB262