Cucsa.032490 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.032490
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transmembrane protein, putative
Location	scaffold00429 : 1791449 .. 1791840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATTAGGGTTCTTGATAGGCCTTCCTTTTGCCATTCTTTCCTTGGTTCTCTCCTTCATTGGTGCTCTTCTTTGGATCTTTTGGTGAGTTTCTTCTCTTTACCCTTTTTCGTTTTGGAAAAATAAAATCTCTACCCTTCTCAAAATCGGTTATTAAGTATTTGCATATGAATCGTAACTTTTTGGATTTTTGTTTTATTTTGGTTAATATTATTTAACGTTGATATGATTTTGATAATTGGATATATATATATATACATATATATAGGTCTCTTTTGAGCTGCATTTGCCCTTGCTGTGTATGTTTTGCTGTACTTTCAGATTTGTCAATAAGCCTTTTGAAGCTTCCCATCGATGTTATGGATTGGTTCGTTAGCTTAATTCCTTGTTAG

mRNA sequence

ACCATTAGGGTTCTTGATAGGCCTTCCTTTTGCCATTCTTTCCTTGGTTCTCTCCTTCATTGGTGCTCTTCTTTGGATCTTTTGGTCTCTTTTGAGCTGCATTTGCCCTTGCTGTGTATGTTTTGCTGTACTTTCAGATTTGTCAATAAGCCTTTTGAAGCTTCCCATCGATGTTATGGATTGGTTCGTTAGCTTAATTCCTTGTTAG

Coding sequence (CDS)

ACCATTAGGGTTCTTGATAGGCCTTCCTTTTGCCATTCTTTCCTTGGTTCTCTCCTTCATTGGTGCTCTTCTTTGGATCTTTTGGTCTCTTTTGAGCTGCATTTGCCCTTGCTGTGTATGTTTTGCTGTACTTTCAGATTTGTCAATAAGCCTTTTGAAGCTTCCCATCGATGTTATGGATTGGTTCGTTAGCTTAATTCCTTGTTAG

Protein sequence

PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMDWFVSLIPC*

Homology

[Close]

BLAST of Cucsa.032490 vs. TrEMBL
Match: B9HZQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11520g PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-21
Identity = 43/68 (63.24%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+++LVLS IGA++W+  ++LSC+CPCC+CFA L++ ++SL+KLP+ VM 
Sbjct: 6  PLGFLIGLPFALVALVLSLIGAVIWVIGTVLSCLCPCCICFAGLANFAVSLVKLPVKVMR 65

Query: 61 WFVSLIPC 69
          WF+ LIPC
Sbjct: 66 WFIDLIPC 73

[Close]

BLAST of Cucsa.032490 vs. TrEMBL
Match: B9N659_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-21
Identity = 44/68 (64.71%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+++LVLS IGA++W+  S+LSCICPCC+C A L++L++SL+KLP++V+ 
Sbjct: 6  PLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVNVIR 65

Query: 61 WFVSLIPC 69
          WF+ LIPC
Sbjct: 66 WFIDLIPC 73

[Close]

BLAST of Cucsa.032490 vs. TrEMBL
Match: W9R7H7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012157 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-20
Identity = 41/68 (60.29%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA LSL++S +G ++WI  S+LSC+CPCC+CFA +++++IS++KLP+ +++
Sbjct: 9  PLGFLIGLPFAFLSLLISLVGVVVWIIGSVLSCMCPCCICFAGIANMAISIVKLPVKIIE 68

Query: 61 WFVSLIPC 69
          WFV LIPC
Sbjct: 69 WFVDLIPC 76

[Close]

BLAST of Cucsa.032490 vs. TrEMBL
Match: V7BUX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-20
Identity = 42/68 (61.76%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+L+L+LS +GA++W+F S+LSC+CPCC+C A L++L++SL+KLP+ V+ 
Sbjct: 10 PLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPVKVLR 69

Query: 61 WFVSLIPC 69
          WF   IPC
Sbjct: 70 WFTRQIPC 77

[Close]

BLAST of Cucsa.032490 vs. TrEMBL
Match: A0A0S3SHQ1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-20
Identity = 42/68 (61.76%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+L+L+LS +GA++W+F S+LSC+CPCC+C A L++L++SL+KLP+ V+ 
Sbjct: 10 PLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPVKVLR 69

Query: 61 WFVSLIPC 69
          WF   IPC
Sbjct: 70 WFTRQIPC 77

[Close]

BLAST of Cucsa.032490 vs. TAIR10
Match: AT2G31090.1 (AT2G31090.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 8.5e-23
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFL+GLPFA LSL+LS IG ++WI   LLSCICPCC+C  VL +++I L+K PI VM+
Sbjct: 8  PLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHVME 67

Query: 61 WFVSLIPC 69
          WF+S IPC
Sbjct: 68 WFMSKIPC 75

[Close]

BLAST of Cucsa.032490 vs. TAIR10
Match: AT2G20562.1 (AT2G20562.1 unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 3.2e-22
Identity = 40/68 (58.82%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+++LVL+ +GA++WI  ++LSC+CPCC CFA L++ ++ L+KLPI V+ 
Sbjct: 6  PLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIKVLR 65

Query: 61 WFVSLIPC 69
          WF   IPC
Sbjct: 66 WFTHSIPC 73

[Close]

BLAST of Cucsa.032490 vs. NCBI nr
Match: gi|449457079|ref|XP_004146276.1| (PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD
Sbjct: 6  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 65

Query: 61 WFVSLIPC 69
          WFVSLIPC
Sbjct: 66 WFVSLIPC 73

[Close]

BLAST of Cucsa.032490 vs. NCBI nr
Match: gi|659112415|ref|XP_008456209.1| (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-29
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPF+ LSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSD SISL+KLPI+VMD
Sbjct: 5  PLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVMD 64

Query: 61 WFVSLIPC 69
          WF+ LIPC
Sbjct: 65 WFIDLIPC 72

[Close]

BLAST of Cucsa.032490 vs. NCBI nr
Match: gi|224117108|ref|XP_002317478.1| (hypothetical protein POPTR_0011s11520g [Populus trichocarpa])

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 43/68 (63.24%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+++LVLS IGA++W+  ++LSC+CPCC+CFA L++ ++SL+KLP+ VM 
Sbjct: 6  PLGFLIGLPFALVALVLSLIGAVIWVIGTVLSCLCPCCICFAGLANFAVSLVKLPVKVMR 65

Query: 61 WFVSLIPC 69
          WF+ LIPC
Sbjct: 66 WFIDLIPC 73

[Close]

BLAST of Cucsa.032490 vs. NCBI nr
Match: gi|566153886|ref|XP_006370198.1| (hypothetical protein POPTR_0001s40550g [Populus trichocarpa])

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-21
Identity = 44/68 (64.71%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA+++LVLS IGA++W+  S+LSCICPCC+C A L++L++SL+KLP++V+ 
Sbjct: 6  PLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVNVIR 65

Query: 61 WFVSLIPC 69
          WF+ LIPC
Sbjct: 66 WFIDLIPC 73

[Close]

BLAST of Cucsa.032490 vs. NCBI nr
Match: gi|703106210|ref|XP_010098442.1| (hypothetical protein L484_012157 [Morus notabilis])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 41/68 (60.29%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1  PLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLPIDVMD 60
          PLGFLIGLPFA LSL++S +G ++WI  S+LSC+CPCC+CFA +++++IS++KLP+ +++
Sbjct: 9  PLGFLIGLPFAFLSLLISLVGVVVWIIGSVLSCMCPCCICFAGIANMAISIVKLPVKIIE 68

Query: 61 WFVSLIPC 69
          WFV LIPC
Sbjct: 69 WFVDLIPC 76

The following BLAST results are available for this feature:

BLAST of Cucsa.032490 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HZQ4_POPTR	4.0e-21	63.24	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11520g PE=4 SV=1	[more]
B9N659_POPTR	5.2e-21	64.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1	[more]
W9R7H7_9ROSA	1.5e-20	60.29	Uncharacterized protein OS=Morus notabilis GN=L484_012157 PE=4 SV=1	[more]
V7BUX5_PHAVU	2.0e-20	61.76	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1	[more]
A0A0S3SHQ1_PHAAN	2.0e-20	61.76	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=...	[more]

BLAST of Cucsa.032490 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31090.1	8.5e-23	64.71	unknown protein	[more]
AT2G20562.1	3.2e-22	58.82	unknown protein	[more]

BLAST of Cucsa.032490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457079\|ref\|XP_004146276.1\|	5.5e-32	100.00	PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus]	[more]
gi\|659112415\|ref\|XP_008456209.1\|	2.6e-29	89.71	PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo]	[more]
gi\|224117108\|ref\|XP_002317478.1\|	5.7e-21	63.24	hypothetical protein POPTR_0011s11520g [Populus trichocarpa]	[more]
gi\|566153886\|ref\|XP_006370198.1\|	7.5e-21	64.71	hypothetical protein POPTR_0001s40550g [Populus trichocarpa]	[more]
gi\|703106210\|ref\|XP_010098442.1\|	2.2e-20	60.29	hypothetical protein L484_012157 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.032490.1	Cucsa.032490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834	FAMILY NOT NAMED	coord: 1..68 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.032490	CmoCh04G005880	Cucurbita moschata (Rifu)	cgycmoB0012
Cucsa.032490	Cp4.1LG01g01710	Cucurbita pepo (Zucchini)	cgycpeB0007
Cucsa.032490	Carg13184	Silver-seed gourd	carcgyB0048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.032490	Watermelon (97103) v2	cgywmbB003
Cucsa.032490	Wax gourd	cgywgoB003
Cucsa.032490	Cucurbita maxima (Rimu)	cgycmaB0007
Cucsa.032490	Cucurbita maxima (Rimu)	cgycmaB0012
Cucsa.032490	Cucurbita moschata (Rifu)	cgycmoB0006
Cucsa.032490	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.032490	Cucumber (Chinese Long) v2	cgycuB003
Cucsa.032490	Melon (DHL92) v3.5.1	cgymeB002
Cucsa.032490	Watermelon (Charleston Gray)	cgywcgB003
Cucsa.032490	Watermelon (97103) v1	cgywmB002
Cucsa.032490	Cucurbita pepo (Zucchini)	cgycpeB0005
Cucsa.032490	Bottle gourd (USVL1VR-Ls)	cgylsiB003
Cucsa.032490	Melon (DHL92) v3.6.1	cgymedB002
Cucsa.032490	Silver-seed gourd	carcgyB0730
Cucsa.032490	Cucumber (Chinese Long) v3	cgycucB006