Carg13184 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13184
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_101 : 827785 .. 829639 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCGTTGGTTCTCTTCTTTTCATCTTTTTGTAAGTTTCTTTTCTTCTTCGTTATCGTTTAATTCTAACCCGTTTTTTCAATTTTTTCGTTTCGATATCATGTCGAGAAACACAACCACGAACAAAAACAAACCCTAATTTTCTCGGAATGCATGCTCCTGTTCTTCGTCGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTGGTTTGAATGCATGCTCCTGTTCTTCATGTCTACGATTAGGATTTTATCTTACATTTTTGTTGGTTTGAATGCATGCTCCCGTTTTTCGTGTCTACAATTAGGGTTTTATCTTGCATTTTTGTTGGTTCGATATCATGTCAAGAAACACAAACAAAAAAACAAACCCTAATTTTCTCGGAATGCATCCTCCTGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCATTCTTCGTGTCTACGATTAGAGTTTTATCTTTCATTTTTGTTGGTTTGAATGCATGCTTCCATTCTTCGTGTCTATGATTAGGGTTTTATCTTGCATTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAATAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCCTTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAATAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTTGGTTTGAATGCATGCTCCCATTTTTCATGTCTACGATTAGGGTTTTTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACACAAAAACAAAACAAACCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTAGTTTGATATCATGTCGAGAAACACAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTAGTTTGATATCATGTCGAGAAACACAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCATTCTTCGTGTCTACGATTAGAGTTTTATCTTGCATTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGACTAGGGTCTTATCTTGCATTTTTATTGGTTTGATATCATGTCGAGAAACACAAACAAAAACAAACCCTAATTTCCTCGAAATGCATGCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCCTTTTTGTTGGTTTGAATGCATGCTCCCATTTTTCGTGTCTACGATTAGGATTTTATCTTGCATTTTAGTTGGTTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGACTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCAGCCTTGTGAAGCTTCCCATCAATATAATTATTTGGTTCACTGATATGATTCCTTTTTAG

mRNA sequence

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCGTTGGTTCTCTTCTTTTCATCTTTTTGATTTTATCTTGCATTTTAGTTGGTTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGACTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCAGCCTTGTGAAGCTTCCCATCAATATAATTATTTGGTTCACTGATATGATTCCTTTTTAG

Coding sequence (CDS)

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCGTTGGTTCTCTTCTTTTCATCTTTTTGATTTTATCTTGCATTTTAGTTGGTTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGACTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCAGCCTTGTGAAGCTTCCCATCAATATAATTATTTGGTTCACTGATATGATTCCTTTTTAG

Protein sequence

MACCRPLGFLIGLPFALLSLSLSFVGSLLFIFLILSCILVGFDPILINVCMVFDDLGRSLLSCICPCCVCVAILISFSISLVKLPINIIIWFTDMIPF

Homology

[Close]

BLAST of Carg13184 vs. NCBI nr
Match: XP_004146276.1 (PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 8.4e-06
Identity = 46/99 (46.46%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MACCRPLGFLIGLPFALLSLSLSFVGSLLFIF-LILSCILVGFDPILINVCM-VFDDLGR 60
          MACCRPLGFLIGLPFA+LSL LSF+G+LL+IF  +LSCI          VC  V  DL  
Sbjct: 1  MACCRPLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICP------CCVCFAVLSDLSI 60

Query: 61 SLLSCIXXXXXXXXXXXXXXXXXXXLPINIIIWFTDMIP 98
          SLL                      LPI+++ WF  +IP
Sbjct: 61 SLLK---------------------LPIDVMDWFVSLIP 72

[Close]

BLAST of Carg13184 vs. TAIR10
Match: AT2G31090.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.9e-04
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 4  CRPLGFLIGLPFALLSLSLSFVGSLLFIF-LILSCI 39
          CRPLGFL+GLPFA LSL LS +G +++I  L+LSCI
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCI 41

The following BLAST results are available for this feature:

BLAST of Carg13184 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146276.1	8.4e-06	46.46	PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus]	[more]

BLAST of Carg13184 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31090.1	1.9e-04	66.67	unknown protein	[more]

BLAST of Carg13184 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13184 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13184-RA	Carg13184-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834	FAMILY NOT NAMED	coord: 3..39
None	No IPR available	PANTHER	PTHR33834:SF2	SUBFAMILY NOT NAMED	coord: 60..97
None	No IPR available	PANTHER	PTHR33834:SF2	SUBFAMILY NOT NAMED	coord: 3..39
None	No IPR available	PANTHER	PTHR33834	FAMILY NOT NAMED	coord: 60..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13184	Cucsa.032490	Cucumber (Gy14) v1	carcgyB0048
Carg13184	CmoCh04G005880	Cucurbita moschata (Rifu)	carcmoB0058
Carg13184	Cp4.1LG01g01710	Cucurbita pepo (Zucchini)	carcpeB0061

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13184	Silver-seed gourd	carcarB051
Carg13184	Cucumber (Gy14) v2	carcgybB0043
Carg13184	Cucurbita maxima (Rimu)	carcmaB0053
Carg13184	Cucurbita maxima (Rimu)	carcmaB0055
Carg13184	Cucurbita moschata (Rifu)	carcmoB0055
Carg13184	Cucurbita pepo (Zucchini)	carcpeB0059
Carg13184	Wild cucumber (PI 183967)	carcpiB0047
Carg13184	Cucumber (Chinese Long) v2	carcuB0043
Carg13184	Cucumber (Chinese Long) v3	carcucB0048
Carg13184	Bottle gourd (USVL1VR-Ls)	carlsiB039
Carg13184	Melon (DHL92) v3.5.1	carmeB0041
Carg13184	Melon (DHL92) v3.6.1	carmedB0042
Carg13184	Watermelon (Charleston Gray)	carwcgB0045
Carg13184	Watermelon (97103) v1	carwmB0048
Carg13184	Watermelon (97103) v2	carwmbB0042
Carg13184	Wax gourd	carwgoB0050