CmoCh04G005880 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G005880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 2933511 .. 2937790 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTAAGTTTCTTTTATTCTTCGTTATCGTTTAATTCTAACCCGTTTTTTCAATTTTTCCTTTCGATATCATGTCGAGAAACACAACCACGAACAAAAACAAACCCTAATTTTCTCGGAATGCATGCTCCTGTTCTTCGTCGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTGGTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGATTTGGGTAGGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCGATGTAATCATTTGGTTCACTGATATGATTCCTTTTTAGGGTTTTAGGCCAAATGAAAAGCTAATTCAATGGGAATATTGTTGAATGTTGTTGTAAAATGGGCGATGGAATGAAAAGATATGAGATTTTCTTTAGCTTTTTGGGAACTGTAACGAACGTAATGTGCTCGATTTGCACCTGATTCAACTGTAAATTTACAGCGGCTTATAAAATAAAGGAGACTGCATATCGGTGTCGAGCTTGTCACACGCACTTTAATACTCGAGGCAACGAGGTAAAAATGTAACAAGCTTTTAGGTTTAGAGAACGAGGATCGAATTACTTCTAATAACGTTATCATAAACTATTTATACGAGGGTTGACCCACGATTTCTCCCTAAAGACTCGGTGAGCTGTGAATTTGCAAAGTGCATGCCCTATAGGTCAGCTCGAGCCAAGGTGGGTTTTTGAGCTTCTTGGCCGAATATTTCGTTTATTTGAGCCCTATATAAATTAAATTAATTAAACAATCTAAATTACTAAAAAAAACGAATTAAATTAGAAATTTAGTCTATAAAATTTAATTTTTTTTAATCGTGTTCTAATTTAGTTTCAATAAATTTGAAAATTATCATCGATAATTTATTGAGTTATCCTTTCTATATATTTTACCCGTATGAAAATTACTATTATAAATTAATAAAATTAGATAATAATTACATAAAGTTAAAATTTAAGATTTATTAAATAAAAATTAATTAACTCGTCCCTATATTTTTGTTTATATATTTTGATAAAATTTTAATTTTTAAACAAATATTGACTAAATTTTAAAAACTATTTTTTAATTAAAAAAAAATAGAAACACGCGCCAAGAAGCCCACGGCCCACTGGCTCAGTCTCTCTGTATATGAGAAATTTCATCATGAAGTTCTCTTACTGAGAGTGAAAATATCACAAAAATATGAATGCAAATGTTGAAGCTCGACCTTCAGTTTTCATGGCGACTCGGGGAGATTTTACGAGAGCAGCCGGAAAGCTCTGTAAACGATTTCTAGGGTTCGTTTTCTAGATAGATCCGTATTGGTTATCAATTGGTGAGTTCCTTTCCCTACTGCTTTGTGGTAATGTTTGAATGCTCTCGTATTTGGTTCGTTGGAATGATAATTGGATGAAGTTTAGGATTCTTTGAGTTTTGCTCGACCGAATAGGTTTAGGACGTTGTTTGTGTTGTCGATTCTATTTGTGATTTTTGTCGTGCGATGTCCTCGGGATCTGTTTCTTCGTCATTGAAGCGGAGTGGTAATCGATCGAGAAAGAGGGTAGTCATCGAGGCTCTTTTTTCCAGTAGATTCTCCCTTGAGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCCGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCCGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCTGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCTGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTACATGTATGTAATTATTAAAACTTGAATGGCCTTTATTTTTAATAAACTCGTACAGTTTATCCTGCTTCAGCTTCTATAGTTGTAATTTTGTTACTTTTGAGGACTAGGAGTTGCTCAGAGAACATGGAATTTGGTGATTGGAAAAGTATTTTTTCGGTGTAACTGTTGTTGAATGAGTTTATTAAGATGTAGTGACTGGTTTATATCAGCATAATCCTGTTAACTTGTGATATCTGTGACCCAATGAGTGATTACTGTGTAAATTTGATCCTTAGTATCTGTTATGTTGAACTTGCATCTGATTTGGGCATGAAATGGATAAGTAACGCCACTAATTTTCTTACTCTAAATTAGTGACATTACAAATGGTATCAAAACTAGATATCGGATGGTGTGCTAGTGAGAATGCTGAGCTTCGAAGGCAGGTAGATACCGGGCAGTATGCCAACGAGGACGCTGGGTCCCGAAGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTGCCAGCAAGGACGCTACGTCCCGAAGAAGGATGTATTGTGAGATCTCACATCGATTGGAGAGGGAAACGAGTGCTAGCGAGTATGCTGGGTCTTGAAGGGGTGGATTGTGAGATCCCATATCAGTGAAGAGGGGAACGAAGCATTGGTGTGGAAATCTCTCTCTAGCAAACGCGTTTTAAAAATTGGAGAGGGAATGACCATGAAGTGAACGTTCACTCGTCTCCAAGCACAAGTGGCCTCTCGACTAACTCTGCGCTGGTATGTTCTTTTCAATGCTGCACTAGTTGTCTAAACATCCTCAATGGTTTGACAAAAAATATTCTTCTGAATGAATTTGGATCAAATCGGAATAACTGGACTGTGGAGGATCTTCAAATTTATTGTCTTTTGGGATGTAATCTTTTAGAGGAATTGTACTTACTGTATGAATTCCTTTGATTGAGCTGTCCTCAACGTTCGGAGCCTCAGTTAAAAGTTATAGGGCCCCTTTGTTTTAACAATATTACTGGAGTTGGATTATTTAGAACACTGGTTGGTGAAAGGTACTGCATGTCTTCTTCCATACTGTACGGGCTATGACTCAATTCAGATGTGACACCTTACCAGAAATGAATACGACAGCATGGACATGAGGACATGTCATATGAACATGACTTGATCATAGTGTGTTTAGTTGGCTAGAACATAGAGACCAGAGGTGGAGGCTAAACTAAAAAAACTCGATCAAATTGCTCAATTCAAGTCTAGATCAGTTCAGCTGGTTGTATATTCTTGCAGTCGACCACAATTGGTCGCCTTTGGTTTGGGTGTGTTCGCTTATCGTTTCAATTGAGTTGACCACGAGCTAGTACATCCCTGCCTCGAAGTTGGATTGAGCTACATCTTCATAGTCCATCCTCCATACGGTTAGTTCAAGAACTTTAGATTTGATTCCAACCACTCTTATAATCTTCTGATCAACATTTTTATTTTACATGTTTTTGTTAGTTCAAAAGCAAAGGTGCGACCACCACTGAAGGATGAATGAAAGCGGAGAACTATGGTACGAGATCACTTTACTAAATGTCTTATTGTAGTGAAGATAAACCTAAAGCCAAATGTAATTCCTGTGTCACTATGTACGCATGTCATACAAATAAGAACGGGACAAAGACAATGAGGTTTCATATCAGGAGTTATTGAAATAAAAGTCTTGTTGACATTATAAGAATGTTCGATGTGCAACTTTTAGTGTAGAG

mRNA sequence

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCGATTCCATCCTCCATACGTTCAAAAGCAAAGGTGCGACCACCACTGAAGGATGAATGAAAGCGGAGAACTATGGTACGAGATCACTTTACTAAATGTCTTATTGTAGTGAAGATAAACCTAAAGCCAAATGTAATTCCTGTGTCACTATGTACGCATGTCATACAAATAAGAACGGGACAAAGACAATGAGGTTTCATATCAGGAGTTATTGAAATAAAAGTCTTGTTGACATTATAAGAATGTTCGATGTGCAACTTTTAGTGTAGAG

Coding sequence (CDS)

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCGATTCCATCCTCCATACGTTCAAAAGCAAAGGTGCGACCACCACTGAAGGATGA
BLAST of CmoCh04G005880 vs. TrEMBL
Match: V7BUX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPI 62
          CRPLGFLIGLPFALL+L LS +G+++++F SILSC+CPCC+C A L + +++LVKLP+
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPV 65

BLAST of CmoCh04G005880 vs. TrEMBL
Match: A0A0S3SHQ1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPI 62
          CRPLGFLIGLPFALL+L LS +G+++++F SILSC+CPCC+C A L + +++LVKLP+
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPV 65

BLAST of CmoCh04G005880 vs. TrEMBL
Match: A0A0L9UME6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g134700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPI 62
          CRPLGFLIGLPFALL+L LS +G+++++F SILSC+CPCC+C A L + +++LVKLP+
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPV 65

BLAST of CmoCh04G005880 vs. TrEMBL
Match: B9N659_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPIDS 63
          CRPLGFLIGLPFAL++L LS IG+++++  S+LSCICPCC+C A L + +++LVKLP++ 
Sbjct: 4  CRPLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVNV 63

Query: 64 I 65
          I
Sbjct: 64 I 64

BLAST of CmoCh04G005880 vs. TrEMBL
Match: I3SIC3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g090695 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 37/58 (63.79%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPI 62
          CRPLGFL+GLPFALL+L LS +G++++IF SILSC+CPCC+C A L + ++ LVKLP+
Sbjct: 9  CRPLGFLLGLPFALLALILSLVGAVIWIFGSILSCLCPCCICCAGLANLAVGLVKLPV 66

BLAST of CmoCh04G005880 vs. TAIR10
Match: AT2G20562.1 (AT2G20562.1 unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-13
Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 1

Query: 1  MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLP 60
          M  CRPLGFLIGLPFAL++L L+ +G++++I  ++LSC+CPCC C A L +F++ L+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of CmoCh04G005880 vs. TAIR10
Match: AT2G31090.1 (AT2G31090.1 unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-13
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPIDS 63
          CRPLGFL+GLPFA LSL LS IG +++I   +LSCICPCC+CV +L+  +I L+K PI  
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPI-H 65

Query: 64 ILHTFKSK 72
          ++  F SK
Sbjct: 66 VMEWFMSK 72

BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|449457079|ref|XP_004146276.1| (PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 1

Query: 1  MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLP 60
          MACCRPLGFLIGLPFA+LSL LSFIG+LL+IF S+LSCICPCCVC A+L   SI+L+KLP
Sbjct: 1  MACCRPLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLP 60

Query: 61 ID 63
          ID
Sbjct: 61 ID 62

BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|659112415|ref|XP_008456209.1| (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 1

Query: 5  RPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPID 63
          +PLGFLIGLPF+ LSL LSFIG+LL+IF S+LSCICPCCVC A+L  FSI+L+KLPI+
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPIN 61

BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|593698686|ref|XP_007149808.1| (hypothetical protein PHAVU_005G100600g [Phaseolus vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-11
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPI 62
          CRPLGFLIGLPFALL+L LS +G+++++F SILSC+CPCC+C A L + +++LVKLP+
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPV 65

BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|502082536|ref|XP_004487196.1| (PREDICTED: uncharacterized protein LOC101513530 [Cicer arietinum])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPI 62
          CRPLGFLIGLPFALL+L LS +G+++++F SILSC+CPCC+C A L + +++LVKLP+
Sbjct: 8  CRPLGFLIGLPFALLALILSLLGAVIWLFGSILSCLCPCCICCAGLANLAVSLVKLPV 65

BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|566153886|ref|XP_006370198.1| (hypothetical protein POPTR_0001s40550g [Populus trichocarpa])

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSILSCICPCCVCVAILISFSITLVKLPIDS 63
          CRPLGFLIGLPFAL++L LS IG+++++  S+LSCICPCC+C A L + +++LVKLP++ 
Sbjct: 4  CRPLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVNV 63

Query: 64 I 65
          I
Sbjct: 64 I 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
V7BUX5_PHAVU5.5e-1163.79Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1[more]
A0A0S3SHQ1_PHAAN5.5e-1163.79Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=... [more]
A0A0L9UME6_PHAAN5.5e-1163.79Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g134700 PE=4 SV=1[more]
B9N659_POPTR1.6e-1060.66Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1[more]
I3SIC3_MEDTR1.6e-1063.79Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g090695 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G20562.15.3e-1357.38 unknown protein[more]
AT2G31090.15.3e-1357.35 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449457079|ref|XP_004146276.1|2.2e-1679.03PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus][more]
gi|659112415|ref|XP_008456209.1|1.1e-1274.14PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo][more]
gi|593698686|ref|XP_007149808.1|7.9e-1163.79hypothetical protein PHAVU_005G100600g [Phaseolus vulgaris][more]
gi|502082536|ref|XP_004487196.1|1.4e-1063.79PREDICTED: uncharacterized protein LOC101513530 [Cicer arietinum][more]
gi|566153886|ref|XP_006370198.1|2.3e-1060.66hypothetical protein POPTR_0001s40550g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G005880.1CmoCh04G005880.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33834FAMILY NOT NAMEDcoord: 4..62
score: 1.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G005880Cucsa.032490Cucumber (Gy14) v1cgycmoB0012
CmoCh04G005880Cp4.1LG01g01710Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G005880Carg13184Silver-seed gourdcarcmoB0058
The following gene(s) are paralogous to this gene:

None