CmoCh04G005880 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTAAGTTTCTTTTATTCTTCGTTATCGTTTAATTCTAACCCGTTTTTTCAATTTTTCCTTTCGATATCATGTCGAGAAACACAACCACGAACAAAAACAAACCCTAATTTTCTCGGAATGCATGCTCCTGTTCTTCGTCGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTGGTTCGATCCGATTTTGATTAATGTTTGTATGGTTTTTGATGATTTGGGTAGGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCGATGTAATCATTTGGTTCACTGATATGATTCCTTTTTAGGGTTTTAGGCCAAATGAAAAGCTAATTCAATGGGAATATTGTTGAATGTTGTTGTAAAATGGGCGATGGAATGAAAAGATATGAGATTTTCTTTAGCTTTTTGGGAACTGTAACGAACGTAATGTGCTCGATTTGCACCTGATTCAACTGTAAATTTACAGCGGCTTATAAAATAAAGGAGACTGCATATCGGTGTCGAGCTTGTCACACGCACTTTAATACTCGAGGCAACGAGGTAAAAATGTAACAAGCTTTTAGGTTTAGAGAACGAGGATCGAATTACTTCTAATAACGTTATCATAAACTATTTATACGAGGGTTGACCCACGATTTCTCCCTAAAGACTCGGTGAGCTGTGAATTTGCAAAGTGCATGCCCTATAGGTCAGCTCGAGCCAAGGTGGGTTTTTGAGCTTCTTGGCCGAATATTTCGTTTATTTGAGCCCTATATAAATTAAATTAATTAAACAATCTAAATTACTAAAAAAAACGAATTAAATTAGAAATTTAGTCTATAAAATTTAATTTTTTTTAATCGTGTTCTAATTTAGTTTCAATAAATTTGAAAATTATCATCGATAATTTATTGAGTTATCCTTTCTATATATTTTACCCGTATGAAAATTACTATTATAAATTAATAAAATTAGATAATAATTACATAAAGTTAAAATTTAAGATTTATTAAATAAAAATTAATTAACTCGTCCCTATATTTTTGTTTATATATTTTGATAAAATTTTAATTTTTAAACAAATATTGACTAAATTTTAAAAACTATTTTTTAATTAAAAAAAAATAGAAACACGCGCCAAGAAGCCCACGGCCCACTGGCTCAGTCTCTCTGTATATGAGAAATTTCATCATGAAGTTCTCTTACTGAGAGTGAAAATATCACAAAAATATGAATGCAAATGTTGAAGCTCGACCTTCAGTTTTCATGGCGACTCGGGGAGATTTTACGAGAGCAGCCGGAAAGCTCTGTAAACGATTTCTAGGGTTCGTTTTCTAGATAGATCCGTATTGGTTATCAATTGGTGAGTTCCTTTCCCTACTGCTTTGTGGTAATGTTTGAATGCTCTCGTATTTGGTTCGTTGGAATGATAATTGGATGAAGTTTAGGATTCTTTGAGTTTTGCTCGACCGAATAGGTTTAGGACGTTGTTTGTGTTGTCGATTCTATTTGTGATTTTTGTCGTGCGATGTCCTCGGGATCTGTTTCTTCGTCATTGAAGCGGAGTGGTAATCGATCGAGAAAGAGGGTAGTCATCGAGGCTCTTTTTTCCAGTAGATTCTCCCTTGAGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCCGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCCGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCTGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTTAATTCTGAATTTCTTTCTTTTTTATTTTGGAAATCTTTCTCCTAGACTCATTGAAGGAGGAAGATATACAAATATGGTGCAGAGAAATCAAAATGGGTATTAATCGATCTGGTTAAGAGTATTGATGATGCTGAACAGTTGAAATTATTAATACTCTTCAATGTCTGTTAGCTTTAGCTTCTTAAGATGGTTACATGTATGTAATTATTAAAACTTGAATGGCCTTTATTTTTAATAAACTCGTACAGTTTATCCTGCTTCAGCTTCTATAGTTGTAATTTTGTTACTTTTGAGGACTAGGAGTTGCTCAGAGAACATGGAATTTGGTGATTGGAAAAGTATTTTTTCGGTGTAACTGTTGTTGAATGAGTTTATTAAGATGTAGTGACTGGTTTATATCAGCATAATCCTGTTAACTTGTGATATCTGTGACCCAATGAGTGATTACTGTGTAAATTTGATCCTTAGTATCTGTTATGTTGAACTTGCATCTGATTTGGGCATGAAATGGATAAGTAACGCCACTAATTTTCTTACTCTAAATTAGTGACATTACAAATGGTATCAAAACTAGATATCGGATGGTGTGCTAGTGAGAATGCTGAGCTTCGAAGGCAGGTAGATACCGGGCAGTATGCCAACGAGGACGCTGGGTCCCGAAGGAGGTGGATTGTGAGATCCCACATCGATTGGAGAGAGGAACGAGTGCCAGCAAGGACGCTACGTCCCGAAGAAGGATGTATTGTGAGATCTCACATCGATTGGAGAGGGAAACGAGTGCTAGCGAGTATGCTGGGTCTTGAAGGGGTGGATTGTGAGATCCCATATCAGTGAAGAGGGGAACGAAGCATTGGTGTGGAAATCTCTCTCTAGCAAACGCGTTTTAAAAATTGGAGAGGGAATGACCATGAAGTGAACGTTCACTCGTCTCCAAGCACAAGTGGCCTCTCGACTAACTCTGCGCTGGTATGTTCTTTTCAATGCTGCACTAGTTGTCTAAACATCCTCAATGGTTTGACAAAAAATATTCTTCTGAATGAATTTGGATCAAATCGGAATAACTGGACTGTGGAGGATCTTCAAATTTATTGTCTTTTGGGATGTAATCTTTTAGAGGAATTGTACTTACTGTATGAATTCCTTTGATTGAGCTGTCCTCAACGTTCGGAGCCTCAGTTAAAAGTTATAGGGCCCCTTTGTTTTAACAATATTACTGGAGTTGGATTATTTAGAACACTGGTTGGTGAAAGGTACTGCATGTCTTCTTCCATACTGTACGGGCTATGACTCAATTCAGATGTGACACCTTACCAGAAATGAATACGACAGCATGGACATGAGGACATGTCATATGAACATGACTTGATCATAGTGTGTTTAGTTGGCTAGAACATAGAGACCAGAGGTGGAGGCTAAACTAAAAAAACTCGATCAAATTGCTCAATTCAAGTCTAGATCAGTTCAGCTGGTTGTATATTCTTGCAGTCGACCACAATTGGTCGCCTTTGGTTTGGGTGTGTTCGCTTATCGTTTCAATTGAGTTGACCACGAGCTAGTACATCCCTGCCTCGAAGTTGGATTGAGCTACATCTTCATAGTCCATCCTCCATACGGTTAGTTCAAGAACTTTAGATTTGATTCCAACCACTCTTATAATCTTCTGATCAACATTTTTATTTTACATGTTTTTGTTAGTTCAAAAGCAAAGGTGCGACCACCACTGAAGGATGAATGAAAGCGGAGAACTATGGTACGAGATCACTTTACTAAATGTCTTATTGTAGTGAAGATAAACCTAAAGCCAAATGTAATTCCTGTGTCACTATGTACGCATGTCATACAAATAAGAACGGGACAAAGACAATGAGGTTTCATATCAGGAGTTATTGAAATAAAAGTCTTGTTGACATTATAAGAATGTTCGATGTGCAACTTTTAGTGTAGAG ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCGATTCCATCCTCCATACGTTCAAAAGCAAAGGTGCGACCACCACTGAAGGATGAATGAAAGCGGAGAACTATGGTACGAGATCACTTTACTAAATGTCTTATTGTAGTGAAGATAAACCTAAAGCCAAATGTAATTCCTGTGTCACTATGTACGCATGTCATACAAATAAGAACGGGACAAAGACAATGAGGTTTCATATCAGGAGTTATTGAAATAAAAGTCTTGTTGACATTATAAGAATGTTCGATGTGCAACTTTTAGTGTAGAG ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTCCATTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCGATTCCATCCTCCATACGTTCAAAAGCAAAGGTGCGACCACCACTGAAGGATGA
BLAST of CmoCh04G005880 vs. TrEMBL
Match: V7BUX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11 Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmoCh04G005880 vs. TrEMBL
Match: A0A0S3SHQ1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11 Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmoCh04G005880 vs. TrEMBL
Match: A0A0L9UME6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g134700 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11 Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmoCh04G005880 vs. TrEMBL
Match: B9N659_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10 Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1
BLAST of CmoCh04G005880 vs. TrEMBL
Match: I3SIC3_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g090695 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10 Identity = 37/58 (63.79%), Postives = 50/58 (86.21%), Query Frame = 1
BLAST of CmoCh04G005880 vs. TAIR10
Match: AT2G20562.1 (AT2G20562.1 unknown protein) HSP 1 Score: 70.5 bits (171), Expect = 5.3e-13 Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 1
BLAST of CmoCh04G005880 vs. TAIR10
Match: AT2G31090.1 (AT2G31090.1 unknown protein) HSP 1 Score: 70.5 bits (171), Expect = 5.3e-13 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|449457079|ref|XP_004146276.1| (PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus]) HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16 Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 1
BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|659112415|ref|XP_008456209.1| (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo]) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12 Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 1
BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|593698686|ref|XP_007149808.1| (hypothetical protein PHAVU_005G100600g [Phaseolus vulgaris]) HSP 1 Score: 74.7 bits (182), Expect = 7.9e-11 Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|502082536|ref|XP_004487196.1| (PREDICTED: uncharacterized protein LOC101513530 [Cicer arietinum]) HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10 Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of CmoCh04G005880 vs. NCBI nr
Match: gi|566153886|ref|XP_006370198.1| (hypothetical protein POPTR_0001s40550g [Populus trichocarpa]) HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10 Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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