Cp4.1LG01g01710 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g01710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 2866817 .. 2867703 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAATGGATAGCAAGGGAGAAAAAGGGGGAGAAATAGAGATAGATAGAGGGTATTACAACATAACCTCTTTTTCCTATTTCTCTTAATTAGCTACACCATGGATCCTCCCTCCCAAAATGGCTCACCTTTTGATATCATCCAAACAAAGAGAGTTTGAAGAAACCCTAAACCAAGAACATTGAAATCAATGGAAGCATGCCATGACCTGAAATTTCTAATCTTTTCATCTCTAAAACTATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTAAGTTTCTTTTCTTTTTCGTTATCGTTCTATTCTAACCCGTTTTTTCAATTTTTCGTTCTGATATCATGTCGAGAAACACAAACACGAACAAAAACAAACCCTAATTTTCTCGAAATGCATGCTCCCGTTCTTCGTCGTCTACGATTAGGGTTTTAGCATTTTTGTTGGTTTGAATGCATGCTCCCGTTTTTCGTGTCTACAATTAGGGTTTTATCTTGCATTTTTGTTGGTTCGACATCATGTCGAGAAACACAAACACGAAAAAAAACAAACCCTAATTTACTCGAAATGCATCCTCCCGTTCTTCGTGTCTACGATTAGGGTTTTATCTTGCATTTTTGTTGGTTCGATACGATTTTGATTAATGTTTGTATGGTTTTTGATGATTTGGGTAGGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCAATGTAATTATTTGGTTCACTGATATGATTCCTTTTTAGGGTTTTAGGCCAAATGAAAAGCTAATT

mRNA sequence

ACAAAATGGATAGCAAGGGAGAAAAAGGGGGAGAAATAGAGATAGATAGAGGGTATTACAACATAACCTCTTTTTCCTATTTCTCTTAATTAGCTACACCATGGATCCTCCCTCCCAAAATGGCTCACCTTTTGATATCATCCAAACAAAGAGAGTTTGAAGAAACCCTAAACCAAGAACATTGAAATCAATGGAAGCATGCCATGACCTGAAATTTCTAATCTTTTCATCTCTAAAACTATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCAATGTAATTATTTGGTTCACTGATATGATTCCTTTTTAGGGTTTTAGGCCAAATGAAAAGCTAATT

Coding sequence (CDS)

ATGGCATGTTGCAGGCCATTAGGGTTCTTGATAGGCCTACCATTTGCCCTTCTTTCCTTATCTCTCTCCTTCATTGGTTCTCTTCTTTTCATCTTTTTGTCCCTTTTGAGCTGCATTTGCCCTTGCTGTGTGTGTGTTGCAATACTTATAAGTTTCTCAATCACCCTTGTGAAGCTTCCCATCAATGTAATTATTTGGTTCACTGATATGATTCCTTTTTAG

Protein sequence

MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINVIIWFTDMIPF
Homology
[Close]
BLAST of Cp4.1LG01g01710 vs. TrEMBL
Match: B9N659_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 44/69 (63.77%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFLIGLPFAL++L LS IG+++++  S+LSCICPCC+C A L + +++LVKLP+NV
Sbjct: 4  CRPLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVNV 63

Query: 64 IIWFTDMIP 73
          I WF D+IP
Sbjct: 64 IRWFIDLIP 72

[Close]
BLAST of Cp4.1LG01g01710 vs. TrEMBL
Match: A0A068UBS9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021283001 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-14
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLP 60
          MA CRPLGFLI LPFALLSL LS +G+++++  S LSCICPCC+C   L++ +++LVKLP
Sbjct: 1  MAKCRPLGFLISLPFALLSLILSLVGAVVWVIGSFLSCICPCCICCTGLVNMAVSLVKLP 60

Query: 61 INVIIWFTDMIP 73
          + +I WFTD IP
Sbjct: 61 VKIIRWFTDQIP 72

[Close]
BLAST of Cp4.1LG01g01710 vs. TrEMBL
Match: A0A0S3SHQ1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-14
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFLIGLPFALL+L LS +G+++++F S+LSC+CPCC+C A L + +++LVKLP+ V
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPVKV 67

Query: 64 IIWFTDMIP 73
          + WFT  IP
Sbjct: 68 LRWFTRQIP 76

[Close]
BLAST of Cp4.1LG01g01710 vs. TrEMBL
Match: V7BUX5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-14
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFLIGLPFALL+L LS +G+++++F S+LSC+CPCC+C A L + +++LVKLP+ V
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPVKV 67

Query: 64 IIWFTDMIP 73
          + WFT  IP
Sbjct: 68 LRWFTRQIP 76

[Close]
BLAST of Cp4.1LG01g01710 vs. TrEMBL
Match: A0A0L9UME6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g134700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-14
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFLIGLPFALL+L LS +G+++++F S+LSC+CPCC+C A L + +++LVKLP+ V
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPVKV 67

Query: 64 IIWFTDMIP 73
          + WFT  IP
Sbjct: 68 LRWFTRQIP 76

[Close]
BLAST of Cp4.1LG01g01710 vs. TAIR10
Match: AT2G20562.1 (AT2G20562.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-16
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1 

Query: 1  MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLP 60
          M  CRPLGFLIGLPFAL++L L+ +G++++I  ++LSC+CPCC C A L +F++ L+KLP
Sbjct: 1  MGDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLP 60

Query: 61 INVIIWFTDMIP 73
          I V+ WFT  IP
Sbjct: 61 IKVLRWFTHSIP 72

[Close]
BLAST of Cp4.1LG01g01710 vs. TAIR10
Match: AT2G31090.1 (AT2G31090.1 unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-15
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFL+GLPFA LSL LS IG +++I   LLSCICPCC+CV +L+  +I L+K PI+V
Sbjct: 6  CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 64 IIWFTDMIP 73
          + WF   IP
Sbjct: 66 MEWFMSKIP 74

[Close]
BLAST of Cp4.1LG01g01710 vs. NCBI nr
Match: gi|449457079|ref|XP_004146276.1| (PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.7e-19
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1 

Query: 1  MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLP 60
          MACCRPLGFLIGLPFA+LSL LSFIG+LL+IF SLLSCICPCCVC A+L   SI+L+KLP
Sbjct: 1  MACCRPLGFLIGLPFAILSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDLSISLLKLP 60

Query: 61 INVIIWFTDMIP 73
          I+V+ WF  +IP
Sbjct: 61 IDVMDWFVSLIP 72

[Close]
BLAST of Cp4.1LG01g01710 vs. NCBI nr
Match: gi|659112415|ref|XP_008456209.1| (PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-17
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 5  RPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINVI 64
          +PLGFLIGLPF+ LSL LSFIG+LL+IF SLLSCICPCCVC A+L  FSI+L+KLPINV+
Sbjct: 4  KPLGFLIGLPFSFLSLVLSFIGALLWIFWSLLSCICPCCVCFAVLSDFSISLMKLPINVM 63

Query: 65 IWFTDMIP 73
           WF D+IP
Sbjct: 64 DWFIDLIP 71

[Close]
BLAST of Cp4.1LG01g01710 vs. NCBI nr
Match: gi|566153886|ref|XP_006370198.1| (hypothetical protein POPTR_0001s40550g [Populus trichocarpa])

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 44/69 (63.77%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFLIGLPFAL++L LS IG+++++  S+LSCICPCC+C A L + +++LVKLP+NV
Sbjct: 4  CRPLGFLIGLPFALIALVLSLIGAVVWVIGSVLSCICPCCICCAGLANLAVSLVKLPVNV 63

Query: 64 IIWFTDMIP 73
          I WF D+IP
Sbjct: 64 IRWFIDLIP 72

[Close]
BLAST of Cp4.1LG01g01710 vs. NCBI nr
Match: gi|661890459|emb|CDP05956.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MACCRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLP 60
          MA CRPLGFLI LPFALLSL LS +G+++++  S LSCICPCC+C   L++ +++LVKLP
Sbjct: 1  MAKCRPLGFLISLPFALLSLILSLVGAVVWVIGSFLSCICPCCICCTGLVNMAVSLVKLP 60

Query: 61 INVIIWFTDMIP 73
          + +I WFTD IP
Sbjct: 61 VKIIRWFTDQIP 72

[Close]
BLAST of Cp4.1LG01g01710 vs. NCBI nr
Match: gi|593698686|ref|XP_007149808.1| (hypothetical protein PHAVU_005G100600g [Phaseolus vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-14
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 4  CRPLGFLIGLPFALLSLSLSFIGSLLFIFLSLLSCICPCCVCVAILISFSITLVKLPINV 63
          CRPLGFLIGLPFALL+L LS +G+++++F S+LSC+CPCC+C A L + +++LVKLP+ V
Sbjct: 8  CRPLGFLIGLPFALLALILSLVGAVIWVFGSILSCLCPCCICCAGLANLAVSLVKLPVKV 67

Query: 64 IIWFTDMIP 73
          + WFT  IP
Sbjct: 68 LRWFTRQIP 76

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g01710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g01710 vs. TrEMBL
Match NameE-valueIdentityDescription
B9N659_POPTR1.3e-1463.77Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40550g PE=4 SV=1[more]
A0A068UBS9_COFCA1.7e-1461.11Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021283001 PE=4 SV=1[more]
A0A0S3SHQ1_PHAAN5.0e-1460.87Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100800 PE=... [more]
V7BUX5_PHAVU5.0e-1460.87Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100600g PE=4 SV=1[more]
A0A0L9UME6_PHAAN5.0e-1460.87Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g134700 PE=4 SV=1[more]
BLAST of Cp4.1LG01g01710 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20562.14.8e-1656.94 unknown protein[more]
AT2G31090.11.4e-1560.87 unknown protein[more]
BLAST of Cp4.1LG01g01710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457079|ref|XP_004146276.1|5.7e-1975.00PREDICTED: uncharacterized protein LOC101208811 [Cucumis sativus][more]
gi|659112415|ref|XP_008456209.1|5.3e-1775.00PREDICTED: uncharacterized protein LOC103496213 [Cucumis melo][more]
gi|566153886|ref|XP_006370198.1|1.9e-1463.77hypothetical protein POPTR_0001s40550g [Populus trichocarpa][more]
gi|661890459|emb|CDP05956.1|2.5e-1461.11unnamed protein product [Coffea canephora][more]
gi|593698686|ref|XP_007149808.1|7.2e-1460.87hypothetical protein PHAVU_005G100600g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g01710.1Cp4.1LG01g01710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33834FAMILY NOT NAMEDcoord: 4..73
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g01710Cucsa.032490Cucumber (Gy14) v1cgycpeB0007
Cp4.1LG01g01710CmoCh04G005880Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g01710Carg13184Silver-seed gourdcarcpeB0061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g01710Wax gourdcpewgoB0517
Cp4.1LG01g01710Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g01710Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g01710Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g01710Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g01710Wild cucumber (PI 183967)cpecpiB388
Cp4.1LG01g01710Cucumber (Chinese Long) v2cpecuB389
Cp4.1LG01g01710Bottle gourd (USVL1VR-Ls)cpelsiB369
Cp4.1LG01g01710Bottle gourd (USVL1VR-Ls)cpelsiB380
Cp4.1LG01g01710Watermelon (Charleston Gray)cpewcgB394
Cp4.1LG01g01710Watermelon (Charleston Gray)cpewcgB406
Cp4.1LG01g01710Watermelon (97103) v1cpewmB410
Cp4.1LG01g01710Watermelon (97103) v1cpewmB433
Cp4.1LG01g01710Melon (DHL92) v3.5.1cpemeB412
Cp4.1LG01g01710Cucumber (Gy14) v2cgybcpeB362
Cp4.1LG01g01710Melon (DHL92) v3.6.1cpemedB481
Cp4.1LG01g01710Silver-seed gourdcarcpeB0927
Cp4.1LG01g01710Cucumber (Chinese Long) v3cpecucB0484