Cucsa.031740 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.031740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMADS-box transcription factor family protein, putative
Locationscaffold00429 : 943079 .. 943640 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGG

mRNA sequence

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGACCAGATGAGTTTGAAGAATACAACGTCGAGG

Coding sequence (CDS)

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGACCAGATGAGTTTGAAGAATACAACGTCGAGG

Protein sequence

MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIDQMSLKNTTSR
Homology
[Close]
BLAST of Cucsa.031740 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-11
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1 

Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVA 134
           D  S  QL  +  A+DSK+  A
Sbjct: 125 DKCSREQLHGIFCAVDSKLNEA 146

[Close]
BLAST of Cucsa.031740 vs. Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 51/155 (32.90%), Postives = 79/155 (50.97%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPN-SSYDLNRFFSD-----RKNKILTNTSK-LLHNVV 120
           P     + + +  Y+ HS+    PN S+ DL   + D      + +IL ++ + LL   +
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEEL 120

Query: 121 DHQSEHQLMELLDALDSKIR-----VANDMIDQMS 142
                ++L  L   +D+ +R      A  M+DQ+S
Sbjct: 121 SEMDVNELEHLERQVDASLRQIRSTKARSMLDQLS 152

[Close]
BLAST of Cucsa.031740 vs. Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 

Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD 51
          MGRG + LK+I N  +R+ TF KR+K L+KKAYELS LCD +  L I S+
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSN 50

[Close]
BLAST of Cucsa.031740 vs. Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-08
Identity = 43/133 (32.33%), Postives = 62/133 (46.62%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + +K I N  SR+ TF KR+  L+KKAYELS LCD +  L + S       +   
Sbjct: 1   MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS-- 60

Query: 61  PPNHHQIHQMIRSYK-----SHSFTKPNSSYDLNRFFSDRKNKI------LTNTSKLLHN 120
             N++ +   I  YK       +   P    +  +++     K+      L NT+K  H 
Sbjct: 61  --NNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNK--HL 120

Query: 121 VVDHQSEHQLMEL 123
           V D+ S   L EL
Sbjct: 121 VGDNVSNLSLKEL 127

[Close]
BLAST of Cucsa.031740 vs. Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-08
Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           +GRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      ST    +
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----STRGRLY 76

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSS--YDLN-RFFSDRKNKILTNTSKLLHN 110
              ++ +   I  YK      PN+S   + N +F+    +K+    S +  N
Sbjct: 77  EYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKN 123

[Close]
BLAST of Cucsa.031740 vs. TrEMBL
Match: A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.7e-74
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIDQM 141
           ELLDALDSKIRVANDMI+ M
Sbjct: 121 ELLDALDSKIRVANDMIEFM 140

[Close]
BLAST of Cucsa.031740 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.3e-24
Identity = 69/154 (44.81%), Postives = 94/154 (61.04%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMID 139
                 +DH  E QL  L+  LDSKI +A   I+
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE 154

[Close]
BLAST of Cucsa.031740 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 120
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 121 ----VDHQSEHQLMELLDALDSKI 131
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

[Close]
BLAST of Cucsa.031740 vs. TrEMBL
Match: M5XI05_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-17
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG L ++LI N ++R+TTF KR+K ++KKAYE STLC++  C+ I     +D  P  H
Sbjct: 1   MGRGRLKMELIANERARKTTFQKRRKGMMKKAYEFSTLCELDVCMIIYGPKQTDRPPELH 60

Query: 61  FETWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKI---LTNTSKLLHNV-- 120
             TWP N  ++ ++I  YK+    KP   ++DL+    DRK K+   +    K ++    
Sbjct: 61  --TWPENRDEVDRIINKYKASIMRKPAKKTFDLSDLLRDRKTKVHVDIYRARKEMYEAKY 120

Query: 121 ------VDHQSEHQLMELLDALDSKI 131
                 ++  SE+QL  LL+ LD+K+
Sbjct: 121 PTWDERIESFSENQLEALLNTLDTKL 144

[Close]
BLAST of Cucsa.031740 vs. TrEMBL
Match: A0A022R0Z2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021353mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-17
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG L L+L+ N KSRR +F KRK  LI K ++L+TLCDV  C+ I  D       + W
Sbjct: 1   MGRGKLKLELMRNEKSRRLSFKKRKDGLINKLHQLTTLCDVTACMIIFDDNSNYQEPDIW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKL-----------LHN 120
           P +  ++ +++ SY S    K  S++ L+ FF DR   +     KL            H 
Sbjct: 61  PRDPEKVRRIVESYDS---PKSVSTFGLSDFFRDRTKTVEDELKKLRKSNLESKFPIRHE 120

Query: 121 VVDHQSEHQLMELLDALDSKIRVANDMIDQMSLKNTTSR 149
            +D  +E QL E  DAL +K R+A   ID +  + +T +
Sbjct: 121 FLDSLTESQLREFGDALKNKARIAKSRIDFLKNQESTMK 156

[Close]
BLAST of Cucsa.031740 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-12
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1 

Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVA 134
           D  S  QL  +  A+DSK+  A
Sbjct: 125 DKCSREQLHGIFCAVDSKLNEA 146

[Close]
BLAST of Cucsa.031740 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-11
Identity = 51/155 (32.90%), Postives = 79/155 (50.97%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPN-SSYDLNRFFSD-----RKNKILTNTSK-LLHNVV 120
           P     + + +  Y+ HS+    PN S+ DL   + D      + +IL ++ + LL   +
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEEL 120

Query: 121 DHQSEHQLMELLDALDSKIR-----VANDMIDQMS 142
                ++L  L   +D+ +R      A  M+DQ+S
Sbjct: 121 SEMDVNELEHLERQVDASLRQIRSTKARSMLDQLS 152

[Close]
BLAST of Cucsa.031740 vs. TAIR10
Match: AT5G55690.1 (AT5G55690.1 MADS-box transcription factor family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 38/143 (26.57%), Postives = 66/143 (46.15%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHF--- 60
           MGR ++ +  I N K+R TT+ KRK  L KKA E STLC V TC+ +             
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query: 61  -ETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLH----NVVD 120
            E WP +  ++ +++  Y+  + +    +Y +         K+   T    +      +D
Sbjct: 61  PELWPKDGSKVREILTKYRDTASSSCTKTYTVQECLEKNNTKVEKPTIATKYPTWDKKLD 120

Query: 121 HQSEHQLMELLDALDSKIRVAND 136
             S + L  +  A+++KI+ A +
Sbjct: 121 QCSLNDLYAVFMAVENKIQEATN 143

[Close]
BLAST of Cucsa.031740 vs. TAIR10
Match: AT5G26650.1 (AT5G26650.1 AGAMOUS-like 36)

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-09
Identity = 43/144 (29.86%), Postives = 64/144 (44.44%), Query Frame = 1 

Query: 6   LSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHH 65
           + L LI N +SR+T+F+KRK  + KK +ELSTLC VQ C  I S   P    E+WP    
Sbjct: 4   VKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVP--ESWPSREG 63

Query: 66  QIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLME-LLD 125
                 R  +     +     D   +  +R    +T   + L N+     E Q+   + D
Sbjct: 64  AKKVASRFLEMPPTARTKKMMDQETYLMER----ITKAKEQLKNLAAENRELQVRRFMFD 123

Query: 126 ALDSKIRV----ANDMIDQMSLKN 145
            ++ K+      A D+ D  S  N
Sbjct: 124 CVEGKMSQYHYDAKDLQDLQSCIN 141

[Close]
BLAST of Cucsa.031740 vs. TAIR10
Match: AT4G09960.3 (AT4G09960.3 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-09
Identity = 35/111 (31.53%), Postives = 55/111 (49.55%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      ST    +
Sbjct: 27  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----STRGRLY 86

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSS--YDLNRFFSDRKNKILTNTSKLLHN 110
              ++ I   I  YK       N+S   ++N  +  +++  L    + + N
Sbjct: 87  EYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQN 132

[Close]
BLAST of Cucsa.031740 vs. NCBI nr
Match: gi|449455824|ref|XP_004145650.1| (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIDQM 141
           ELLDALDSKIRVANDMI+ M
Sbjct: 121 ELLDALDSKIRVANDMIEFM 140

[Close]
BLAST of Cucsa.031740 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 9.1e-24
Identity = 69/154 (44.81%), Postives = 94/154 (61.04%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMID 139
                 +DH  E QL  L+  LDSKI +A   I+
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE 154

[Close]
BLAST of Cucsa.031740 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 9.1e-24
Identity = 70/154 (45.45%), Postives = 93/154 (60.39%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+F+     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP   +++ MI SYK++   K    ++ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMID 139
                 +DH  E QL  L+  LDSKI +A   I+
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIE 154

[Close]
BLAST of Cucsa.031740 vs. NCBI nr
Match: gi|596029901|ref|XP_007219420.1| (hypothetical protein PRUPE_ppa021970mg [Prunus persica])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 120
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 121 ----VDHQSEHQLMELLDALDSKI 131
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

[Close]
BLAST of Cucsa.031740 vs. NCBI nr
Match: gi|694427395|ref|XP_009341327.1| (PREDICTED: agamous-like MADS-box protein AGL14 [Pyrus x bretschneideri])

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L+++LI N +SR+TTF KR+K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLNMELIANERSRKTTFQKRRKGIMKKAYEFSTLCEVDVCMIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQ--- 120
           TWP N  ++ ++I  YK+ +  KP   ++DL+    DRKNK+  +  +    + + +   
Sbjct: 61  TWPKNPEEVSRIINKYKASTMCKPAKKTFDLSDLLMDRKNKVYADIYRKRKEMYETKYPA 120

Query: 121 --------SEHQLMELLDALDSKI 131
                   SE QL  LL+ALD+K+
Sbjct: 121 WDERINTFSESQLEALLNALDAKL 144

The following BLAST results are available for this feature:
BLAST of Cucsa.031740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL82_ARATH5.2e-1132.39Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1[more]
AGL3_ARATH9.7e-1032.90Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2[more]
AGL9_ARADE5.3e-0856.00Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1[more]
MAD13_ORYSJ7.0e-0832.33MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 ... [more]
AG_PANGI7.0e-0832.14Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1[more]
BLAST of Cucsa.031740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAL9_CUCSA8.7e-7498.57Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1[more]
A0A0A0LME6_CUCSA6.3e-2444.81Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1[more]
M5X3X5_PRUPE2.1e-1938.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1[more]
M5XI05_PRUPE9.8e-1736.99Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027181mg PE=4 S... [more]
A0A022R0Z2_ERYGU9.8e-1735.85Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021353mg PE=4 SV=1[more]
BLAST of Cucsa.031740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58890.12.9e-1232.39 AGAMOUS-like 82[more]
AT2G03710.15.5e-1132.90 K-box region and MADS-box transcription factor family protein [more]
AT5G55690.11.4e-0926.57 MADS-box transcription factor family protein[more]
AT5G26650.15.1e-0929.86 AGAMOUS-like 36[more]
AT4G09960.36.7e-0931.53 K-box region and MADS-box transcription factor family protein [more]
BLAST of Cucsa.031740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455824|ref|XP_004145650.1|1.2e-7398.57PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus][more]
gi|778674258|ref|XP_011650173.1|9.1e-2444.81PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus][more]
gi|659121915|ref|XP_008460878.1|9.1e-2445.45PREDICTED: MADS-box protein SOC1-like [Cucumis melo][more]
gi|596029901|ref|XP_007219420.1|3.0e-1938.89hypothetical protein PRUPE_ppa021970mg [Prunus persica][more]
gi|694427395|ref|XP_009341327.1|2.0e-1838.19PREDICTED: agamous-like MADS-box protein AGL14 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.031740.1Cucsa.031740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 5.1E-12coord: 38..59
score: 5.1E-12coord: 3..23
score: 5.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..51
score: 5.5
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..62
score: 5.1
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 18
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 1..81
score: 2.62
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..140
score: 1.3
NoneNo IPR availablePANTHERPTHR11945:SF176PROTEIN AGAMOUS-LIKE 82coord: 2..140
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.031740Csa3G258140Cucumber (Chinese Long) v2cgycuB003
Cucsa.031740CSPI03G20310Wild cucumber (PI 183967)cgycpiB003
Cucsa.031740CsaV3_3G020270Cucumber (Chinese Long) v3cgycucB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.031740Melon (DHL92) v3.6.1cgymedB004
Cucsa.031740Silver-seed gourdcarcgyB0552
Cucsa.031740Silver-seed gourdcarcgyB0854
Cucsa.031740Watermelon (97103) v2cgywmbB004
Cucsa.031740Wax gourdcgywgoB005
Cucsa.031740Cucurbita maxima (Rimu)cgycmaB0005
Cucsa.031740Cucurbita maxima (Rimu)cgycmaB0011
Cucsa.031740Cucurbita moschata (Rifu)cgycmoB0004
Cucsa.031740Cucurbita moschata (Rifu)cgycmoB0010
Cucsa.031740Melon (DHL92) v3.5.1cgymeB003
Cucsa.031740Watermelon (Charleston Gray)cgywcgB004
Cucsa.031740Watermelon (97103) v1cgywmB003
Cucsa.031740Cucurbita pepo (Zucchini)cgycpeB0008
Cucsa.031740Cucurbita pepo (Zucchini)cgycpeB0009
Cucsa.031740Bottle gourd (USVL1VR-Ls)cgylsiB004