Csa3G258140 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G258140
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMADS-box transcription factor; contains IPR002100 (Transcription factor, MADS-box)
LocationChr3 : 16013633 .. 16014351 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

mRNA sequence

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Coding sequence (CDS)

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Protein sequence

MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY*
Homology
[Close]
BLAST of Csa3G258140 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.0e-12
Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 1 

Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 184
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]
BLAST of Csa3G258140 vs. Swiss-Prot
Match: AGL81_ARATH (Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana GN=AGL81 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 50/224 (22.32%), Postives = 93/224 (41.52%), Query Frame = 1 

Query: 19  TTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKS-H 78
           T+   R +++ KKA EL TLCD++ C+       P    +TWPP   ++  +   Y   +
Sbjct: 26  TSLSNRLETIFKKASELCTLCDIEACVIYYG---PDGELKTWPPEREKVEDIALRYSQLN 85

Query: 79  SFTKPNSSYDLNRFFSDRKNK-----------------ILTNTSKLLHNVVDHQSEHQLM 138
              +   S  L  F + +K+K                  L N + L + + DH S  Q+ 
Sbjct: 86  EALRRKKSVTLYDFLNKKKDKTNLEKKAKITDNDDLKTCLKNVNILKYPLADHYSPDQVS 145

Query: 139 ELLDALDSKIRVANDMIEFMEADY------DHLIDQAIGMDTPPSQTEDEETTQFNV--- 198
           +L+ +L+  +    + I F+E+        DH   Q++   +   QT+    +QF++   
Sbjct: 146 QLIQSLEPHVSKVRERIRFVESQKHKETKPDH---QSLASSSLNHQTQSLNPSQFSLFMY 205

Query: 199 ----SDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFD 212
               + L   P     +N + F +LLE   L++ +    +  ++
Sbjct: 206 NHGDNTLSQIPVSASNFNQDYFSALLEQSELKSQIMKQDLCGYE 243

[Close]
BLAST of Csa3G258140 vs. Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]
BLAST of Csa3G258140 vs. Swiss-Prot
Match: AGL75_ARATH (Agamous-like MADS-box protein AGL75 OS=Arabidopsis thaliana GN=AGL75 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-09
Identity = 50/215 (23.26%), Postives = 90/215 (41.86%), Query Frame = 1 

Query: 19  TTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYK-SH 78
           T+   R +++ KKA EL TLCD++ C+       P    +TWP    ++  +   Y   +
Sbjct: 19  TSLSNRLETIFKKASELCTLCDIEACVIYYG---PDGELKTWPKEKEKVRDIALRYSLLN 78

Query: 79  SFTKPNSSYDLNRFFSDRKNKILTNTSK-----------LLHNVVDHQSEHQLMELLDAL 138
              +   S +L+ F + +KNK L N +K           L + + DH    Q+  L+ +L
Sbjct: 79  EALRRKKSVNLHGFLNKKKNKGLKNPNKKMKTSLKNVNILKYPLADHYPPDQVSPLIQSL 138

Query: 139 DSKIRVANDMIEFMEADYDHLIDQAIGMDTPPS---QTEDEETTQFNV-------SDLFN 198
           +  +    + + F+E+   +         TP S    T+    +QF++       + L  
Sbjct: 139 ELHVSKFQERLRFLESQKQNQTKPDHQSLTPSSLNHYTQSLNPSQFSLFMYNHGDNTLSQ 198

Query: 199 EPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFD 212
            P     +N + F +LLE+  L+  +    I  +D
Sbjct: 199 IPVSASNFNQDYFSALLEESELKNQLMKPEICGYD 230

[Close]
BLAST of Csa3G258140 vs. Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 44/154 (28.57%), Postives = 71/154 (46.10%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + +K I N  SR+ TF KR+  L+KKAYEL+ LCD +  L + S       F   
Sbjct: 1   MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNV 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKI------LTNTSK-LLHNVVDH 120
                 I +  ++  S S + P    + +++F     K+      L N ++ L+   + +
Sbjct: 61  NSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGN 120

Query: 121 QSEHQLMELLDALD---SKIRVANDMIEFMEADY 145
            +  +L  L + L+   S+IR     + F E +Y
Sbjct: 121 MTAKELKSLENRLEKGISRIRSKKHELLFSEIEY 154

[Close]
BLAST of Csa3G258140 vs. TrEMBL
Match: A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 1.9e-122
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]
BLAST of Csa3G258140 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 79/210 (37.62%), Postives = 120/210 (57.14%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 180
                 +DH  E QL  L+  LDSKI +A   IE +  + ++ +++   +++   QT + 
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE-IATENNYNVEEGTSVES-SGQTLNA 180

Query: 181 ETTQFNVSDLFNEPDEFEEYNVEGFQSLLE 195
                 V   F+  +E  +Y + G +S +E
Sbjct: 181 NMKCKQVMG-FDHEEESTDYGMFGIRSSME 207

[Close]
BLAST of Csa3G258140 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-19
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 120
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 121 ----VDHQSEHQLMELLDALDSKI 131
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

[Close]
BLAST of Csa3G258140 vs. TrEMBL
Match: A0A022R0Z2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021353mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-17
Identity = 58/166 (34.94%), Postives = 85/166 (51.20%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG L L+L+ N KSRR +F KRK  LI K ++L+TLCDV  C+ I  D       + W
Sbjct: 1   MGRGKLKLELMRNEKSRRLSFKKRKDGLINKLHQLTTLCDVTACMIIFDDNSNYQEPDIW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKL-----------LHN 120
           P +  ++ +++ SY S    K  S++ L+ FF DR   +     KL            H 
Sbjct: 61  PRDPEKVRRIVESYDS---PKSVSTFGLSDFFRDRTKTVEDELKKLRKSNLESKFPIRHE 120

Query: 121 VVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMD 156
            +D  +E QL E  DAL +K R+A   I+F++     +  +   MD
Sbjct: 121 FLDSLTESQLREFGDALKNKARIAKSRIDFLKNQESTMKQEFSSMD 163

[Close]
BLAST of Csa3G258140 vs. TrEMBL
Match: A0A022QKF0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025837mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG L L+L+ N KSRR TF KRK  LI K ++L+TLCDV  C+ I  D       E W
Sbjct: 1   MGRGKLKLELMRNEKSRRLTFKKRKHGLINKLHQLTTLCDVTACMIIFDDNSNYHEPEIW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKL-----------LHN 120
           P +  ++ +++ SY S    K  S++ L+ FF DR   +     KL              
Sbjct: 61  PRDPEKVRRIVESYDS---PKSVSTFGLSDFFRDRTKTVDEELKKLRKSNLESKFPIRQE 120

Query: 121 VVDHQSEHQLMELLDALDSKIRVANDMIEFME 142
            +D  +E QL E  DAL +K R+A   IEF++
Sbjct: 121 FLDSLTESQLREFGDALKNKARIAKSRIEFLK 149

[Close]
BLAST of Csa3G258140 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-13
Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 1 

Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 184
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]
BLAST of Csa3G258140 vs. TAIR10
Match: AT5G40220.1 (AT5G40220.1 AGAMOUS-like 43)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-11
Identity = 51/212 (24.06%), Postives = 87/212 (41.04%), Query Frame = 1 

Query: 19  TTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKS-H 78
           T+   R +++ KKA EL TLCD++ C+       P    +TWPP   ++  +   Y   +
Sbjct: 19  TSLSNRLETIFKKASELCTLCDIEACVIYYG---PDGELKTWPPEREKVRDIALRYSQLN 78

Query: 79  SFTKPNSSYDLNRFFS-DRKNKILTNTSK-----------LLHNVVDHQSEHQLMELLDA 138
              +   S +L+ F +  +KNK L NT K           L + + DH    Q+  L+ +
Sbjct: 79  EALRRKKSVNLHGFLNKKKKNKGLKNTDKKRKTSLKKVNVLKYPLADHYPPDQVSPLIQS 138

Query: 139 LDSKIRVANDMIEFMEA--------DYDHLIDQAIGMDTPPSQTEDEETTQFNVSD--LF 198
           L+  +   ++ +EF+E+        D+  L   ++   T            +N  D  L 
Sbjct: 139 LELHVSKFHERLEFLESRKQNETQPDHHSLASSSLNHQTQSLNPSQFSLFMYNHGDNTLS 198

Query: 199 NEPDEFEEYNVEGFQSLLEDKFLETLVQNNPI 208
             P     +N + F +LLE   L+  +    I
Sbjct: 199 QIPVSASNFNQDYFSALLEQSELKNQLMKQEI 227

[Close]
BLAST of Csa3G258140 vs. TAIR10
Match: AT5G39750.1 (AT5G39750.1 AGAMOUS-like 81)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-11
Identity = 50/224 (22.32%), Postives = 93/224 (41.52%), Query Frame = 1 

Query: 19  TTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKS-H 78
           T+   R +++ KKA EL TLCD++ C+       P    +TWPP   ++  +   Y   +
Sbjct: 26  TSLSNRLETIFKKASELCTLCDIEACVIYYG---PDGELKTWPPEREKVEDIALRYSQLN 85

Query: 79  SFTKPNSSYDLNRFFSDRKNK-----------------ILTNTSKLLHNVVDHQSEHQLM 138
              +   S  L  F + +K+K                  L N + L + + DH S  Q+ 
Sbjct: 86  EALRRKKSVTLYDFLNKKKDKTNLEKKAKITDNDDLKTCLKNVNILKYPLADHYSPDQVS 145

Query: 139 ELLDALDSKIRVANDMIEFMEADY------DHLIDQAIGMDTPPSQTEDEETTQFNV--- 198
           +L+ +L+  +    + I F+E+        DH   Q++   +   QT+    +QF++   
Sbjct: 146 QLIQSLEPHVSKVRERIRFVESQKHKETKPDH---QSLASSSLNHQTQSLNPSQFSLFMY 205

Query: 199 ----SDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFD 212
               + L   P     +N + F +LLE   L++ +    +  ++
Sbjct: 206 NHGDNTLSQIPVSASNFNQDYFSALLEQSELKSQIMKQDLCGYE 243

[Close]
BLAST of Csa3G258140 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]
BLAST of Csa3G258140 vs. TAIR10
Match: AT5G41200.1 (AT5G41200.1 AGAMOUS-like 75)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-10
Identity = 50/215 (23.26%), Postives = 90/215 (41.86%), Query Frame = 1 

Query: 19  TTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYK-SH 78
           T+   R +++ KKA EL TLCD++ C+       P    +TWP    ++  +   Y   +
Sbjct: 19  TSLSNRLETIFKKASELCTLCDIEACVIYYG---PDGELKTWPKEKEKVRDIALRYSLLN 78

Query: 79  SFTKPNSSYDLNRFFSDRKNKILTNTSK-----------LLHNVVDHQSEHQLMELLDAL 138
              +   S +L+ F + +KNK L N +K           L + + DH    Q+  L+ +L
Sbjct: 79  EALRRKKSVNLHGFLNKKKNKGLKNPNKKMKTSLKNVNILKYPLADHYPPDQVSPLIQSL 138

Query: 139 DSKIRVANDMIEFMEADYDHLIDQAIGMDTPPS---QTEDEETTQFNV-------SDLFN 198
           +  +    + + F+E+   +         TP S    T+    +QF++       + L  
Sbjct: 139 ELHVSKFQERLRFLESQKQNQTKPDHQSLTPSSLNHYTQSLNPSQFSLFMYNHGDNTLSQ 198

Query: 199 EPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFD 212
            P     +N + F +LLE+  L+  +    I  +D
Sbjct: 199 IPVSASNFNQDYFSALLEESELKNQLMKPEICGYD 230

[Close]
BLAST of Csa3G258140 vs. NCBI nr
Match: gi|449455824|ref|XP_004145650.1| (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus])

HSP 1 Score: 446.4 bits (1147), Expect = 2.8e-122
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]
BLAST of Csa3G258140 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.2e-25
Identity = 83/210 (39.52%), Postives = 115/210 (54.76%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+F+     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP   +++ MI SYK++   K    ++ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 180
                 +DH  E QL  L+  LDSKI +A   IE     Y+  +++  G     SQT + 
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETECYN--VEE--GTSVESSQTLNA 180

Query: 181 ETTQFNVSDLFNEPDEFEEYNVEGFQSLLE 195
                 V   F+  +E   Y + G +S +E
Sbjct: 181 NMKHKQVMG-FDPEEESTNYGMFGIRSSME 205

[Close]
BLAST of Csa3G258140 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 9.2e-25
Identity = 79/210 (37.62%), Postives = 120/210 (57.14%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 180
                 +DH  E QL  L+  LDSKI +A   IE +  + ++ +++   +++   QT + 
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE-IATENNYNVEEGTSVES-SGQTLNA 180

Query: 181 ETTQFNVSDLFNEPDEFEEYNVEGFQSLLE 195
                 V   F+  +E  +Y + G +S +E
Sbjct: 181 NMKCKQVMG-FDHEEESTDYGMFGIRSSME 207

[Close]
BLAST of Csa3G258140 vs. NCBI nr
Match: gi|596029901|ref|XP_007219420.1| (hypothetical protein PRUPE_ppa021970mg [Prunus persica])

HSP 1 Score: 103.6 bits (257), Expect = 4.4e-19
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 120
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 121 ----VDHQSEHQLMELLDALDSKI 131
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

[Close]
BLAST of Csa3G258140 vs. NCBI nr
Match: gi|1009141775|ref|XP_015888368.1| (PREDICTED: floral homeotic protein AGAMOUS-like [Ziziphus jujuba])

HSP 1 Score: 103.2 bits (256), Expect = 5.8e-19
Identity = 68/176 (38.64%), Postives = 91/176 (51.70%), Query Frame = 1 

Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIAS----DCDPSTH 60
           MGRG L ++LI N KSRR TF KRKK L KK  ELSTLC +  C  I        DPS  
Sbjct: 1   MGRGKLKMELIENEKSRRLTFQKRKKGLTKKCSELSTLCGIDVCTIIYGPNNHTKDPSVE 60

Query: 61  FETWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKL-------LH 120
            ETWP +H+++ ++I+ Y++ +  K P  S +L+ F+ +RK  I +   KL         
Sbjct: 61  LETWPKDHNEVIRIIQRYQAATIYKPPKKSSNLSDFYIERKKNIDSKIDKLRKAKYPISD 120

Query: 121 NVVDH----QSEHQLMELLDALDSKIRVANDMIEFMEAD----------YDHLIDQ 151
            ++ H      +HQL  LL  LD KI     MIEF + +           DHL DQ
Sbjct: 121 ELITHYCASSGDHQLGLLLRRLDLKIEAVKRMIEFRKHNQVINYNPHDHVDHLFDQ 176

The following BLAST results are available for this feature:
BLAST of Csa3G258140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL82_ARATH4.0e-1230.93Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1[more]
AGL81_ARATH1.4e-0922.32Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana GN=AGL81 PE=1 SV=1[more]
AGL3_ARATH2.4e-0934.11Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2[more]
AGL75_ARATH7.1e-0923.26Agamous-like MADS-box protein AGL75 OS=Arabidopsis thaliana GN=AGL75 PE=1 SV=1[more]
MAD21_ORYSJ1.6e-0828.57MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 ... [more]
BLAST of Csa3G258140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAL9_CUCSA1.9e-122100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1[more]
A0A0A0LME6_CUCSA6.4e-2537.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1[more]
M5X3X5_PRUPE3.1e-1938.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1[more]
A0A022R0Z2_ERYGU6.4e-1734.94Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021353mg PE=4 SV=1[more]
A0A022QKF0_ERYGU1.1e-1638.16Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025837mg PE=4 SV=1[more]
BLAST of Csa3G258140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58890.12.3e-1330.93 AGAMOUS-like 82[more]
AT5G40220.14.7e-1124.06 AGAMOUS-like 43[more]
AT5G39750.18.0e-1122.32 AGAMOUS-like 81[more]
AT2G03710.11.4e-1034.11 K-box region and MADS-box transcription factor family protein [more]
AT5G41200.14.0e-1023.26 AGAMOUS-like 75[more]
BLAST of Csa3G258140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455824|ref|XP_004145650.1|2.8e-122100.00PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus][more]
gi|659121915|ref|XP_008460878.1|3.2e-2539.52PREDICTED: MADS-box protein SOC1-like [Cucumis melo][more]
gi|778674258|ref|XP_011650173.1|9.2e-2537.62PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus][more]
gi|596029901|ref|XP_007219420.1|4.4e-1938.89hypothetical protein PRUPE_ppa021970mg [Prunus persica][more]
gi|1009141775|ref|XP_015888368.1|5.8e-1938.64PREDICTED: floral homeotic protein AGAMOUS-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G258140.1Csa3G258140.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 1.1E-11coord: 23..38
score: 1.1E-11coord: 3..23
score: 1.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..51
score: 1.1
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..62
score: 5.1
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 18
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 1..81
score: 6.67
NoneNo IPR availableunknownCoilCoilcoord: 123..143
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 182..212
score: 3.0E-32coord: 2..162
score: 3.0
NoneNo IPR availablePANTHERPTHR11945:SF176PROTEIN AGAMOUS-LIKE 82coord: 2..162
score: 3.0E-32coord: 182..212
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G258140CSPI03G20310Wild cucumber (PI 183967)cpicuB120
Csa3G258140Cucsa.031740Cucumber (Gy14) v1cgycuB003
Csa3G258140CsGy3G020050Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G258140Melon (DHL92) v3.6.1cumedB228
Csa3G258140Silver-seed gourdcarcuB0513
Csa3G258140Silver-seed gourdcarcuB0780
Csa3G258140Watermelon (97103) v2cuwmbB218
Csa3G258140Wax gourdcuwgoB271
Csa3G258140Cucurbita maxima (Rimu)cmacuB242
Csa3G258140Cucurbita maxima (Rimu)cmacuB455
Csa3G258140Cucurbita moschata (Rifu)cmocuB229
Csa3G258140Cucurbita moschata (Rifu)cmocuB442
Csa3G258140Melon (DHL92) v3.5.1cumeB161
Csa3G258140Watermelon (Charleston Gray)cuwcgB233
Csa3G258140Watermelon (97103) v1cuwmB247
Csa3G258140Cucurbita pepo (Zucchini)cpecuB547
Csa3G258140Cucurbita pepo (Zucchini)cpecuB600
Csa3G258140Bottle gourd (USVL1VR-Ls)culsiB212