CSPI03G20310 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G20310
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	MADS-box transcription factor family protein, putative
Location	Chr3 : 16120154 .. 16120804 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

mRNA sequence

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Coding sequence (CDS)

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Homology

[Close]

BLAST of CSPI03G20310 vs. Swiss-Prot
Match: AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-09
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 1


Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 184
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]

BLAST of CSPI03G20310 vs. Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-08
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CSPI03G20310 vs. Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD 51
          MGRG + LK+I N  +R+ TF KR+K L+KKAYELS LCD +  L I S+
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSN 50

[Close]

BLAST of CSPI03G20310 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-07
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1


Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
          M R  + L  I N  SR+ TF KRKK L+KK +ELSTLC +  C  I S  D  T+ E W
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD--TNPEVW 60

Query: 61 PPN 64
          P N
Sbjct: 61 PSN 61

[Close]

BLAST of CSPI03G20310 vs. Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 44/154 (28.57%), Postives = 73/154 (47.40%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + +K I N  SR+ TF KR+  L+KKAYEL+ LCD +  L + S       F   
Sbjct: 1   MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNV 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKI------LTNTSK-LLHNVVDH 120
                 I +  ++  S S + P    + +++F     K+      L N ++ L+   + +
Sbjct: 61  NSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGN 120

Query: 121 QSEHQLMELLDALD---SKIRVANDMIEFMEADY 145
            +  +L  L + L+   S+IR     + F E +Y
Sbjct: 121 MTAKELKSLENRLEKGISRIRSKKHELLFSEIEY 154

[Close]

BLAST of CSPI03G20310 vs. TrEMBL
Match: A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 4.5e-119
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFN+SDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]

BLAST of CSPI03G20310 vs. TrEMBL
Match: A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 78/210 (37.14%), Postives = 120/210 (57.14%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 180
                 +DH  E QL  L+  LDSKI +A   IE +  + ++ +++   +++   QT + 
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE-IATENNYNVEEGTSVES-SGQTLNA 180

Query: 181 ETTQFNISDLFNEPDEFEEYNVEGFQSLLE 195
                 +   F+  +E  +Y + G +S +E
Sbjct: 181 NMKCKQVMG-FDHEEESTDYGMFGIRSSME 207

[Close]

BLAST of CSPI03G20310 vs. TrEMBL
Match: M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 120
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 121 ----VDHQSEHQLMELLDALDSKI 131
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

[Close]

BLAST of CSPI03G20310 vs. TrEMBL
Match: A0A022R0Z2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021353mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 58/166 (34.94%), Postives = 85/166 (51.20%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG L L+L+ N KSRR +F KRK  LI K ++L+TLCDV  C+ I  D       + W
Sbjct: 1   MGRGKLKLELMRNEKSRRLSFKKRKDGLINKLHQLTTLCDVTACMIIFDDNSNYQEPDIW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKL-----------LHN 120
           P +  ++ +++ SY S    K  S++ L+ FF DR   +     KL            H 
Sbjct: 61  PRDPEKVRRIVESYDS---PKSVSTFGLSDFFRDRTKTVEDELKKLRKSNLESKFPIRHE 120

Query: 121 VVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMD 156
            +D  +E QL E  DAL +K R+A   I+F++     +  +   MD
Sbjct: 121 FLDSLTESQLREFGDALKNKARIAKSRIDFLKNQESTMKQEFSSMD 163

[Close]

BLAST of CSPI03G20310 vs. TrEMBL
Match: A0A022QKF0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025837mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG L L+L+ N KSRR TF KRK  LI K ++L+TLCDV  C+ I  D       E W
Sbjct: 1   MGRGKLKLELMRNEKSRRLTFKKRKHGLINKLHQLTTLCDVTACMIIFDDNSNYHEPEIW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKL-----------LHN 120
           P +  ++ +++ SY S    K  S++ L+ FF DR   +     KL              
Sbjct: 61  PRDPEKVRRIVESYDS---PKSVSTFGLSDFFRDRTKTVDEELKKLRKSNLESKFPIRQE 120

Query: 121 VVDHQSEHQLMELLDALDSKIRVANDMIEFME 142
            +D  +E QL E  DAL +K R+A   IEF++
Sbjct: 121 FLDSLTESQLREFGDALKNKARIAKSRIEFLK 149

[Close]

BLAST of CSPI03G20310 vs. TAIR10
Match: AT5G58890.1 (AT5G58890.1 AGAMOUS-like 82)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-10
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 1


Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 184
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]

BLAST of CSPI03G20310 vs. TAIR10
Match: AT2G03710.1 (AT2G03710.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-09
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CSPI03G20310 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-08
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 1


Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
          M R  + L  I N  SR+ TF KRKK L+KK +ELSTLC +  C  I S  D  T+ E W
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD--TNPEVW 60

Query: 61 PPN 64
          P N
Sbjct: 61 PSN 61

[Close]

BLAST of CSPI03G20310 vs. TAIR10
Match: AT1G77950.1 (AT1G77950.1 AGAMOUS-like 67)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-08
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1


Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCD 53
          MGR  L LK I    +R+ TF KRKK LIKKAYELSTLCD+   L + S  D
Sbjct: 1  MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSD 52

[Close]

BLAST of CSPI03G20310 vs. TAIR10
Match: AT5G26580.1 (AT5G26580.1 AGAMOUS-like-34)

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-08
Identity = 30/62 (48.39%), Postives = 35/62 (56.45%), Query Frame = 1


Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
          MG   + L LI N  SR T+F+KRK  ++KK YELSTLC VQ C  I S   P   F   
Sbjct: 1  MGMKKVKLSLIANEISRETSFMKRKNGIMKKLYELSTLCGVQACTLIYSPFIPVPEFLEM 60

Query: 61 PP 63
           P
Sbjct: 61 SP 62

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: gi|449455824|ref|XP_004145650.1| (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus])

HSP 1 Score: 435.3 bits (1118), Expect = 6.4e-119
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFN+SDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: gi|659121915|ref|XP_008460878.1| (PREDICTED: MADS-box protein SOC1-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 9.5e-22
Identity = 82/210 (39.05%), Postives = 115/210 (54.76%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+F+     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP   +++ MI SYK++   K    ++ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 180
                 +DH  E QL  L+  LDSKI +A   IE     Y+  +++  G     SQT + 
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETECYN--VEE--GTSVESSQTLNA 180

Query: 181 ETTQFNISDLFNEPDEFEEYNVEGFQSLLE 195
                 +   F+  +E   Y + G +S +E
Sbjct: 181 NMKHKQVMG-FDPEEESTNYGMFGIRSSME 205

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: gi|778674258|ref|XP_011650173.1| (PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 78/210 (37.14%), Postives = 120/210 (57.14%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 60
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 120
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 121 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 180
                 +DH  E QL  L+  LDSKI +A   IE +  + ++ +++   +++   QT + 
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE-IATENNYNVEEGTSVES-SGQTLNA 180

Query: 181 ETTQFNISDLFNEPDEFEEYNVEGFQSLLE 195
                 +   F+  +E  +Y + G +S +E
Sbjct: 181 NMKCKQVMG-FDHEEESTDYGMFGIRSSME 207

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: gi|596029901|ref|XP_007219420.1| (hypothetical protein PRUPE_ppa021970mg [Prunus persica])

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 60
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 61  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 120
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 121 ----VDHQSEHQLMELLDALDSKI 131
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: gi|1009141775|ref|XP_015888368.1| (PREDICTED: floral homeotic protein AGAMOUS-like [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 5.4e-17
Identity = 68/176 (38.64%), Postives = 91/176 (51.70%), Query Frame = 1


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIAS----DCDPSTH 60
           MGRG L ++LI N KSRR TF KRKK L KK  ELSTLC +  C  I        DPS  
Sbjct: 1   MGRGKLKMELIENEKSRRLTFQKRKKGLTKKCSELSTLCGIDVCTIIYGPNNHTKDPSVE 60

Query: 61  FETWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKL-------LH 120
            ETWP +H+++ ++I+ Y++ +  K P  S +L+ F+ +RK  I +   KL         
Sbjct: 61  LETWPKDHNEVIRIIQRYQAATIYKPPKKSSNLSDFYIERKKNIDSKIDKLRKAKYPISD 120

Query: 121 NVVDH----QSEHQLMELLDALDSKIRVANDMIEFMEAD----------YDHLIDQ 151
            ++ H      +HQL  LL  LD KI     MIEF + +           DHL DQ
Sbjct: 121 ELITHYCASSGDHQLGLLLRRLDLKIEAVKRMIEFRKHNQVINYNPHDHVDHLFDQ 176

The following BLAST results are available for this feature:

BLAST of CSPI03G20310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL82_ARATH	7.1e-09	30.93	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana GN=AGL82 PE=1 SV=1	[more]
AGL3_ARATH	7.8e-08	34.11	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2	[more]
AGL9_ARADE	1.7e-07	56.00	Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1	[more]
AGL80_ARATH	5.1e-07	49.21	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1	[more]
MAD21_ORYSJ	1.1e-06	28.57	MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 ...	[more]

BLAST of CSPI03G20310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL9_CUCSA	4.5e-119	99.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258140 PE=4 SV=1	[more]
A0A0A0LME6_CUCSA	1.5e-21	37.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336070 PE=4 SV=1	[more]
M5X3X5_PRUPE	1.7e-17	38.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021970mg PE=4 SV=1	[more]
A0A022R0Z2_ERYGU	4.6e-15	34.94	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021353mg PE=4 SV=1	[more]
A0A022QKF0_ERYGU	6.0e-15	38.16	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025837mg PE=4 SV=1	[more]

BLAST of CSPI03G20310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58890.1	4.0e-10	30.93	AGAMOUS-like 82	[more]
AT2G03710.1	4.4e-09	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT5G48670.1	2.9e-08	49.21	AGAMOUS-like 80	[more]
AT1G77950.1	3.7e-08	57.69	AGAMOUS-like 67	[more]
AT5G26580.1	6.4e-08	48.39	AGAMOUS-like-34	[more]

BLAST of CSPI03G20310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455824\|ref\|XP_004145650.1\|	6.4e-119	99.54	PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus]	[more]
gi\|659121915\|ref\|XP_008460878.1\|	9.5e-22	39.05	PREDICTED: MADS-box protein SOC1-like [Cucumis melo]	[more]
gi\|778674258\|ref\|XP_011650173.1\|	2.1e-21	37.14	PREDICTED: floral homeotic protein DEFICIENS-like [Cucumis sativus]	[more]
gi\|596029901\|ref\|XP_007219420.1\|	2.4e-17	38.89	hypothetical protein PRUPE_ppa021970mg [Prunus persica]	[more]
gi\|1009141775\|ref\|XP_015888368.1\|	5.4e-17	38.64	PREDICTED: floral homeotic protein AGAMOUS-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000987	core promoter proximal region sequence-specific DNA binding
molecular_function	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20310.1	CSPI03G20310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 1.1E-11coord: 23..38 score: 1.1E-11coord: 3..23 score: 1.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..51 score: 1.1
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..62 score: 5.1
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 1..61 score: 18
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 1..81 score: 6.67
None	No IPR available	unknown	Coil	Coil	coord: 123..143 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 182..212 score: 4.2E-32coord: 2..162 score: 4.2
None	No IPR available	PANTHER	PTHR11945:SF176	PROTEIN AGAMOUS-LIKE 82	coord: 182..212 score: 4.2E-32coord: 2..162 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G20310	Csa3G258140	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G20310	CsaV3_3G020270	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G20310	Cucsa.031740	Cucumber (Gy14) v1	cgycpiB003
CSPI03G20310	CsGy3G020050	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G20310	Cucurbita pepo (Zucchini)	cpecpiB550
CSPI03G20310	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G20310	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G20310	Melon (DHL92) v3.6.1	cpimedB229
CSPI03G20310	Silver-seed gourd	carcpiB0520
CSPI03G20310	Silver-seed gourd	carcpiB0798
CSPI03G20310	Watermelon (97103) v2	cpiwmbB224
CSPI03G20310	Wax gourd	cpiwgoB271
CSPI03G20310	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G20310	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G20310	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G20310	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G20310	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G20310	Watermelon (Charleston Gray)	cpiwcgB241
CSPI03G20310	Watermelon (97103) v1	cpiwmB246