CsaV3_3G020270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMADS-box transcription factor
Locationchr3 : 16256046 .. 16256915 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGAGTGTTTCGGCAGCATTTTAAAGCTCATAAGGAGTTGACTGGGAATTTTGAAAAATAAAAGGAAGATCGGGGCATGAACAACGGTAAAGTTCCAAAACCATAAAGAAGTCAGATCACTCCTGTTTTCTCTGTTCTTCTCATTCCCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

mRNA sequence

ATGATCACTCCTGTTTTCTCTGTTCTTCTCATTCCCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Coding sequence (CDS)

ATGATCACTCCTGTTTTCTCTGTTCTTCTCATTCCCTCTACAATTGCTCAAAACTTGCTAAGCCATTGGAGTTTCCTTCGTTTTGCATTGTTGAGAAGAGCGATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCCTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACGTTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Protein sequence

MITPVFSVLLIPSTIAQNLLSHWSFLRFALLRRAMGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Homology
[Close]
BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_004145650.1 (PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus] >KGN57712.1 hypothetical protein Csa_3G258140 [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 1.9e-118
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 154
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 155 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 214
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 215 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 251
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]
BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_023526169.1 (agamous-like MADS-box protein AGL6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 115/191 (60.21%), Postives = 134/191 (70.16%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG LSLKLI NPKSRRTTF KRKKSL+KKAYELSTLCDVQTC+ IASD      F+TW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASD-----EFQTW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTK--PNSSYDLNRFFSDRKNKILTNTSKLLHNV-------- 154
           P + +Q+  MIRSYKS SF K    SSYDLN+FFSDRKNKI+T TSKL   V        
Sbjct: 61  PSDRNQVEAMIRSYKSQSFCKHSAKSSYDLNQFFSDRKNKIVTETSKLRDKVQKSKDTNS 120

Query: 155 ---VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQT----ED 209
              +D  SEHQL  LL  LDSKI VA+ MIEFMEADYD+LI+ A+ + +   QT    E 
Sbjct: 121 DHCLDSLSEHQLKVLLATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQTLSPLET 180

[Close]
BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_022934582.1 (agamous-like MADS-box protein AGL6 [Cucurbita moschata])

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44
Identity = 113/191 (59.16%), Postives = 133/191 (69.63%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG LSLKLI NPKSRRTTF KRKKSL+KKAYELSTLCDVQTC+ IAS+      FETW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASE-----EFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTKPN--SSYDLNRFFSDRKNKILTNTSKLLHNV-------- 154
           P +  Q+  MIRSYKS SF K +  SSYDLN+FFSDRKNKI+T TSKL   V        
Sbjct: 61  PSDRTQVEAMIRSYKSQSFCKQSAKSSYDLNQFFSDRKNKIVTETSKLREKVQKSKDTNS 120

Query: 155 ---VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQ----TED 209
              +D  SEHQL  L+  LDSKI VA+ MIEFMEADYD+LI+ A+ + +   Q     E 
Sbjct: 121 DHCLDSLSEHQLKALMATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQIFSPLET 180

[Close]
BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_023528957.1 (agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-23
Identity = 89/229 (38.86%), Postives = 118/229 (51.53%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI-----ASDCDP-- 94
           M RG LS  LI N KSR +TF +RK SL+KKAYELSTLCDV+TC+ I     A D DP  
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSL 60

Query: 95  -STHFETWPPNHHQIHQMIRSYKSHSFT-KPNSSYDLNRFFSDRKNKILTNTSKLLHNV- 154
            S  F TWP N  ++  MI +YK+ +   +    +DL+ +FSDRK K++T   K    V 
Sbjct: 61  SSVEFHTWPSNRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVG 120

Query: 155 ----------VDHQSEHQLMELLDALDSKIRVANDMIEFMEAD------------YDHLI 214
                     +D  SE QL E ++ LDS+I  A  MI+FM+AD            Y++++
Sbjct: 121 KIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRMIDFMDADNENLFGMFSCEEYENVV 180

Query: 215 DQAIGMDTP-PSQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDK 231
                  TP P   E E     N  +     DE    N E  + LLED+
Sbjct: 181 QMGGDSSTPVPPLVELESPDSLNTPNXXXXEDEI-GCNFENLEFLLEDE 228

[Close]
BLAST of CsaV3_3G020270 vs. NCBI nr
Match: XP_022983430.1 (agamous-like MADS-box protein AGL14 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 89/229 (38.86%), Postives = 118/229 (51.53%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI-----ASDCDP-- 94
           M RG LS  LI N KSR +TF +RK SL+KKAYELSTLCDV+TC+ I     A D DP  
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSL 60

Query: 95  -STHFETWPPNHHQIHQMIRSYKSHSFT-KPNSSYDLNRFFSDRKNKILTNTSKLLHNV- 154
            S  F TWP N  ++  MI +YK+ +   +    +DL+ +FSDRK K++T   K    V 
Sbjct: 61  SSVEFHTWPSNRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVG 120

Query: 155 ----------VDHQSEHQLMELLDALDSKIRVANDMIEFMEAD------------YDHLI 214
                     +D  SE QL E ++ LDS+I  A  MI+FM+AD            Y++++
Sbjct: 121 KIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRMIDFMDADNENLFGMFSCEEYENVV 180

Query: 215 DQAIGMDTPP-SQTEDEETTQFNVSDLFNEPDEFEEYNVEGFQSLLEDK 231
                  TP  S  E E T   N  +      E    N E  + LLED+
Sbjct: 181 QMGGDSSTPVLSLVELESTDSLNSPNXXXXXXEI-GCNFENLEYLLEDE 228

[Close]
BLAST of CsaV3_3G020270 vs. TAIR10
Match: AT5G58890.1 (AGAMOUS-like 82)

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-10
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 0 

Query: 39  ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 98
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 99  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 158
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 159 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 218
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]
BLAST of CsaV3_3G020270 vs. TAIR10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-09
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 95  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 155 LMELLDALD 162
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]
BLAST of CsaV3_3G020270 vs. TAIR10
Match: AT5G40220.1 (AGAMOUS-like 43)

HSP 1 Score: 56.2 bits (134), Expect = 3.3e-08
Identity = 51/212 (24.06%), Postives = 89/212 (41.98%), Query Frame = 0 

Query: 53  TTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKS-H 112
           T+   R +++ KKA EL TLCD++ C+       P    +TWPP   ++  +   Y   +
Sbjct: 19  TSLSNRLETIFKKASELCTLCDIEACVIYYG---PDGELKTWPPEREKVRDIALRYSQLN 78

Query: 113 SFTKPNSSYDLNRFFS-DRKNKILTNTSK-----------LLHNVVDHQSEHQLMELLDA 172
              +   S +L+ F +  +KNK L NT K           L + + DH    Q+  L+ +
Sbjct: 79  EALRRKKSVNLHGFLNKKKKNKGLKNTDKKRKTSLKKVNVLKYPLADHYPPDQVSPLIQS 138

Query: 173 LDSKIRVANDMIEFMEA--------DYDHLIDQAIGMDTPPSQTEDEETTQFNVSD--LF 232
           L+  +   ++ +EF+E+        D+  L   ++   T            +N  D  L 
Sbjct: 139 LELHVSKFHERLEFLESRKQNETQPDHHSLASSSLNHQTQSLNPSQFSLFMYNHGDNTLS 198

Query: 233 NEPDEFEEYNVEGFQSLLEDKFLETLVQNNPI 242
             P     +N + F +LLE   L+  +    I
Sbjct: 199 QIPVSASNFNQDYFSALLEQSELKNQLMKQEI 227

[Close]
BLAST of CsaV3_3G020270 vs. TAIR10
Match: AT1G77950.1 (AGAMOUS-like 67)

HSP 1 Score: 55.5 bits (132), Expect = 5.6e-08
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 35 MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCD 87
          MGR  L LK I    +R+ TF KRKK LIKKAYELSTLCD+   L + S  D
Sbjct: 1  MGRVKLELKRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSD 52

[Close]
BLAST of CsaV3_3G020270 vs. TAIR10
Match: AT5G48670.1 (AGAMOUS-like 80)

HSP 1 Score: 55.5 bits (132), Expect = 5.6e-08
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 35 MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
          M R  + L  I N  SR+ TF KRKK L+KK +ELSTLC +  C  I S  D  T+ E W
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD--TNPEVW 60

Query: 95 PPN 98
          P N
Sbjct: 61 PSN 61

[Close]
BLAST of CsaV3_3G020270 vs. Swiss-Prot
Match: sp|Q9FIM0|AGL82_ARATH (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 0 

Query: 39  ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 98
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 99  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 158
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 159 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 218
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]
BLAST of CsaV3_3G020270 vs. Swiss-Prot
Match: sp|P29383|AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 95  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 154
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 155 LMELLDALD 162
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]
BLAST of CsaV3_3G020270 vs. Swiss-Prot
Match: sp|Q38694|AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 35 MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD 85
          MGRG + LK+I N  +R+ TF KR+K L+KKAYELS LCD +  L I S+
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSN 50

[Close]
BLAST of CsaV3_3G020270 vs. Swiss-Prot
Match: sp|Q9FJK3|AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 

Query: 35 MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
          M R  + L  I N  SR+ TF KRKK L+KK +ELSTLC +  C  I S  D  T+ E W
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD--TNPEVW 60

Query: 95 PPN 98
          P N
Sbjct: 61 PSN 61

[Close]
BLAST of CsaV3_3G020270 vs. Swiss-Prot
Match: sp|A2Y9P0|MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica OX=39946 GN=MADS5 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 35 MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIAS 84
          MGRG + LK I N  SR+ TF KR+  L+KKAYELS LCD +  L I S
Sbjct: 1  MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS 49

[Close]
BLAST of CsaV3_3G020270 vs. TrEMBL
Match: tr|A0A0A0LAL9|A0A0A0LAL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 1.2e-118
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 95  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 154
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 155 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 214
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 215 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 251
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]
BLAST of CsaV3_3G020270 vs. TrEMBL
Match: tr|A0A1S3CDG6|A0A1S3CDG6_CUCME (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 83/210 (39.52%), Postives = 115/210 (54.76%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 94
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+F+     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 95  FETWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 154
             TWPP   +++ MI SYK++   K    ++ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEARF 120

Query: 155 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 214
                 +DH  E QL  L+  LDSKI +A   IE     Y+  +++  G     SQT + 
Sbjct: 121 TKWDERLDHLLEDQLRVLMMELDSKIEIAKKRIEIETECYN--VEE--GTSVESSQTLNA 180

Query: 215 ETTQFNVSDLFNEPDEFEEYNVEGFQSLLE 229
                 V   F+  +E   Y + G +S +E
Sbjct: 181 NMKHKQVMG-FDPEEESTNYGMFGIRSSME 205

[Close]
BLAST of CsaV3_3G020270 vs. TrEMBL
Match: tr|A0A0A0LME6|A0A0A0LME6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.1e-21
Identity = 79/210 (37.62%), Postives = 120/210 (57.14%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI----ASDCDPSTH 94
           MGRG LS+KLI N KSR+TTF KRK SL++KAYELSTLCDV+ C+ +     S+      
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 95  FETWPPNHHQIHQMIRSYKSHS-FTKPNSSYDLNRFFSDRKNKILTNTSKLLHNV----- 154
             TWPP+  +++ MI SYK++  + +   S+ L  FFS+RK K+ T+ SKL  +V     
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEERF 120

Query: 155 ------VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDE 214
                 +DH  E QL  L+  LDSKI +A   IE +  + ++ +++   +++   QT + 
Sbjct: 121 PSWDERLDHLLEDQLRVLMVELDSKIEIAKKRIE-IATENNYNVEEGTSVES-SGQTLNA 180

Query: 215 ETTQFNVSDLFNEPDEFEEYNVEGFQSLLE 229
                 V   F+  +E  +Y + G +S +E
Sbjct: 181 NMKCKQVMG-FDHEEESTDYGMFGIRSSME 207

[Close]
BLAST of CsaV3_3G020270 vs. TrEMBL
Match: tr|A0A2N9FVF0|A0A2N9FVF0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19065 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 61/164 (37.20%), Postives = 88/164 (53.66%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 94
           MGRG L+++LI + KSR  TF KRKK L+KKAYE STLC V TC+ I      D      
Sbjct: 1   MGRGKLTMELIKSEKSRNVTFQKRKKGLMKKAYEFSTLCGVDTCMIIYGPKFQDRPMELG 60

Query: 95  TWPPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV------- 154
           TWP NH ++ +MI  YK ++  K    S  L+ FF +R  K+    S+L  N+       
Sbjct: 61  TWPQNHDEVVKMINRYKENTMHKRSRGSSTLSNFFIERNKKVEIEISRLRKNIFKTKYPT 120

Query: 155 ----VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQ 185
               ++  SE QLM +LD +D K       ++ ++ +   LI++
Sbjct: 121 WDDRIETMSEDQLMVVLDVIDEKFEALTRRMKMLQGEQQLLIEK 164

[Close]
BLAST of CsaV3_3G020270 vs. TrEMBL
Match: tr|M5X3X5|M5X3X5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G110900 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-17
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 0 

Query: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD--CDPSTHFE 94
           MGRG L ++LI N +SR+TTF KR K ++KKAYE STLC+V  C+ I      D     +
Sbjct: 1   MGRGRLKMELIANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPKLTDRPPELQ 60

Query: 95  TWPPNHHQIHQMIRSYKSHSFTKP-NSSYDLNRFFSDRKNKILTNTSKLLHNV------- 154
           TWP N  Q+ ++I  YK+ + +KP   ++DL+    DRKNK+  +  +    +       
Sbjct: 61  TWPQNSEQVDRIINKYKASTMSKPAKKTFDLSDLLMDRKNKVYADIYRARKEMYEAKYPT 120

Query: 155 ----VDHQSEHQLMELLDALDSKI 165
               ++  SE+QL  LLD LD+K+
Sbjct: 121 WDERIESFSENQLEALLDKLDAKL 144

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145650.11.9e-118100.00PREDICTED: agamous-like MADS-box protein AGL3 [Cucumis sativus] >KGN57712.1 hypo... [more]
XP_023526169.12.1e-4560.21agamous-like MADS-box protein AGL6 [Cucurbita pepo subsp. pepo][more]
XP_022934582.11.8e-4459.16agamous-like MADS-box protein AGL6 [Cucurbita moschata][more]
XP_023528957.13.0e-2338.86agamous-like MADS-box protein AGL14 [Cucurbita pepo subsp. pepo][more]
XP_022983430.11.9e-2238.86agamous-like MADS-box protein AGL14 [Cucurbita maxima][more]
BLAST of CsaV3_3G020270 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58890.16.0e-1030.93AGAMOUS-like 82[more]
AT2G03710.18.7e-0934.11K-box region and MADS-box transcription factor family protein [more]
AT5G40220.13.3e-0824.06AGAMOUS-like 43[more]
AT1G77950.15.6e-0857.69AGAMOUS-like 67[more]
AT5G48670.15.6e-0849.21AGAMOUS-like 80[more]
BLAST of CsaV3_3G020270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FIM0|AGL82_ARATH1.1e-0830.93Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=... [more]
sp|P29383|AGL3_ARATH1.6e-0734.11Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ... [more]
sp|Q38694|AGL9_ARADE2.7e-0756.00Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1[more]
sp|Q9FJK3|AGL80_ARATH1.0e-0649.21Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=... [more]
sp|A2Y9P0|MADS5_ORYSI1.3e-0657.14MADS-box transcription factor 5 OS=Oryza sativa subsp. indica OX=39946 GN=MADS5 ... [more]
BLAST of CsaV3_3G020270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAL9|A0A0A0LAL9_CUCSA1.2e-118100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE=4 SV=1[more]
tr|A0A1S3CDG6|A0A1S3CDG6_CUCME1.9e-2139.52MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1[more]
tr|A0A0A0LME6|A0A0A0LME6_CUCSA4.1e-2137.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1[more]
tr|A0A2N9FVF0|A0A2N9FVF0_FAGSY2.8e-1737.20Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19065 PE=4 SV=1[more]
tr|M5X3X5|M5X3X5_PRUPE4.7e-1738.89Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G110900 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000982transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0000987core promoter proximal region sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR033897MADS_SRF-like
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020270.1CsaV3_3G020270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..177
NoneNo IPR availablePANTHERPTHR11945:SF176AGAMOUS-LIKE MADS-BOX PROTEIN AGL82coord: 35..199
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 35..199
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 57..72
score: 64.75
coord: 72..93
score: 26.0
coord: 37..57
score: 40.64
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 35..96
e-value: 5.1E-16
score: 69.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 45..85
e-value: 1.3E-15
score: 56.5
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 35..95
score: 18.194
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 48..135
e-value: 2.7E-14
score: 54.9
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 35..115
IPR033897MADS SRF-likeCDDcd00266MADS_SRF_likecoord: 36..102
e-value: 9.10996E-21
score: 82.6931

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G020270CSPI03G20310Wild cucumber (PI 183967)cpicucB144
CsaV3_3G020270Cucsa.031740Cucumber (Gy14) v1cgycucB006
CsaV3_3G020270CsGy3G020050Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020270Silver-seed gourdcarcucB0518
CsaV3_3G020270Silver-seed gourdcarcucB0801
CsaV3_3G020270Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020270Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G020270Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020270Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G020270Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G020270Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020270Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020270Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020270Melon (DHL92) v3.6.1cucmedB235
CsaV3_3G020270Melon (DHL92) v3.6.1cucmedB237
CsaV3_3G020270Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020270Watermelon (97103) v1cucwmB256
CsaV3_3G020270Watermelon (97103) v2cucwmbB220
CsaV3_3G020270Wax gourdcucwgoB274