Cucsa.012750 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.012750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	scaffold00164 : 496196 .. 499301 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGAGTTTCACACACGCACCTTCTCCTTCCCCTTATGGGCTTAAGCGTTCTGACCATGGATTTCAGTCTTCTCATTTTCCAATTTCTACTCCTTCCAAGCACTCCCATGGCGGCAATTTCACTTCTAATGCTTTTAGAATCAGAAATTGTTCGGTTCCGGTTGTAAACCACCCCTCGCATAGTTCCTCTTCTCTTAGACGCACCTTATCCAGTAATTGGGATGTTTTTAGCAACTATTCTGTATCTTCCGCTCGATCCTTGCCTCGATTCGAAGAGCTTGACACTACCAATATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAGGCAATGTCTCCAACTATTTCCTCATATTTCTTAATCAATTGGTTTGTTTCTACTTTCAGCGGTGTGTTGAATTCTGTTTAGCTTTTTTTAGGTTTGATTTTGTATTTGTTATATTGGGATTTTTGTTTGGATGGTTTGGGAGTTGTTTGAGTTGGAAGAAGAAGAGAGAATTTTTATTGGGACTTGAATATTGTATTGGGTACTGGCAGGTTGATGACATGACGGCAGATTTCATCATAAGCCAACTACTCTTTCTTGATGCTGAAGACCCAACCAAAGATATTAAATTGTTTATCAACTCACCTGGTGGCTCTGTCACTGCTGGTATTTTCCGTCATCAAGTCCTTACATTCTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTCAGACGGATAATTTTTAGTTTTAATTTGAAGTTGTTGGGTTGAAAGGATGCTGTCGTATAATCTTTATGGTTCAAATCTGCTTCCCACAGTATTCACGCCCTTCATTCTTTTATGATGGTTTTAGTACTCCTTGTTGCTCCAAACTGCTTGTGCGTGAGAGTGTAAAGTAAGTTACATAATCCAATATTTGGTACGCAAATGAGTTCAAGTGCCTTCTGTGTTGATCACGTGCATCAAAATAAACACATTCCAAAGTTTGGAATCATTGAAATATTTGAGAAATGACTTCATTATTCTCACTTCGGAAGTAGCTTGGGATCTGTCATTCTAAGTCAGGATCATAATCCATCAAGTTGTGAGACAAGAGCTTCTGTTATTCTATCGAATTACATTTCATCTTATGGTATTTTAACCAAGTTATTCTATATATATAGACACAGAGAGAGATGGAGAGAAGGAAACAATACAAAAGCAGACTAAAAGCCAAGTACACAAAAACCTCACTAAAGAAAGGTGCTCCAACTCAGTAAAATGTTGCCTAATGAATAATTACAAAAAGTCTTTGAAATTGAAGCCCATGAAAAGAAAGAGCTCCAGCGAGTCATTACGTTTTAGCACTATGGTTGTAACTTTTTTGATCGATGAAAATTATATTATATGGTATGTAGTGTGGCAATCATGGGGCAAGATTCCGGATGATATGCATATAGCCTGATTCAAGTTCAATTCAAATGATAATCTGTAAAGTATTTTCTGATTAGGAGGTTGCACAAACAGATCTCTGGTGTGGGGTTTGTTTTTTTCATTCAACATAATAATGATATTATAAATTATTTTGCAACGGCCCTTAGTTTTCCTCCTGGTTTCCCTGTAATTCAGAAGATACTTCAGCAGATGAAGTCACCTACCCATCCATGCGATAACCTCTTTATTTCTCCTTACTGAAAACTGCCCTTCTTATGTTCGTTTATCTCTTGTGTGATGATCTCTCCCTTCAATTATTTCAAGGCAAATGGATCTTTGTATATCCACATCTTTTTGGTCTACCTCTATTGTTGTAGGTTGTTATTTCAATCCATGTTTGTTTCTCAAATTTTTTATTGAATGTAGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCCGATGTTTCAACCGTTTGTCTGGGACTTGCCGCATCCATGGGAGCATTTCTTCTAGCCTCTGGTTCAAAGGGAAAGCGATTTTGCATGCCCAATGGAAGAGTGATGATCCATCAACCTCTTGGAACTGCTGGAGGAAAAGTGAGTAGATTATTGTTCTGTGCTTTGCTGTTAAGTTAATGGCTTTTCCAGTCGCTCTTGAATGTGTGCAGCATTTCTAAAATTCTTTGTTCATAATGTTTAGTGCTTGCATTGGATGGTAGGGAGTTGAAAATCAATAAGCCTCATAATAGCTTTTATGAACTTGATTTATTTGCGTTGAATTTTTTGGTAAAGGGACACAGCTTTGGCTCCACAAATAAGAGCATGGAATGAAATTCAGGAGTTTTTCTGAAATTATCGATATTGGCTTTTGATCTATTTAATAATTAATTAGTTGATTTAAGCTTTCAATTATGGGAGAACGCCTAATCAATTCACTGGTTACCCCATCTATGCCAGGCAACAGAGATGAGCATTCGGATACGAGAAATGGCGTATCACAAGATTAAGCTAAACAAAATTTTTTCTAGAATCACTGGAAAGCCAATAGAGCAGGTTTGCCAATATATTACTTTAACTACTTGGTTCTCAATTTTGTAAAGAAACCCTTTAGTATTTGTTTGTCCTTTGCAGATTGAATTGGACACAGAACGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATATGGTTTGATCGATGAAGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCTCCTCCGAAAACTCGAATCTGGGATCTATGGAAGGTTGAAGGGAGTCGAAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTGAAGAATGGATATGAAGAAGGGGGTCAAGGAAGTGACAAAGAGCGCGGTGGCCAGCAGGAAACAGAAGAACCAAGTCCTGTATGACACAGGACTCACCCTGTTCCTCTTCTTCCATCCCTCTGCCTCTATTGTTGTATCCGAGCTTGTTCTTTCCATTCTCAAATAGTTGTTTCTCTGTAAGATCTTAAGACGATTATTACCAATTTGTTAAACAGGCCTAGGTTTCGGAAAATTCAAGGGTCGTAACATTCCCTTTCTCTTCCCTTATCTAGACGCTAAAATATTGCTGGAGTCTGATATTGAATTTGTCTAGAAACCTTGGCTCAACGTTCAATGGGGAGCACCAATGACCA

mRNA sequence

ATGGAGTTGAGTTTCACACACGCACCTTCTCCTTCCCCTTATGGGCTTAAGCGTTCTGACCATGGATTTCAGTCTTCTCATTTTCCAATTTCTACTCCTTCCAAGCACTCCCATGGCGGCAATTTCACTTCTAATGCTTTTAGAATCAGAAATTGTTCGGTTCCGGTTGTAAACCACCCCTCGCATAGTTCCTCTTCTCTTAGACGCACCTTATCCAGTAATTGGGATGTTTTTAGCAACTATTCTGTATCTTCCGCTCGATCCTTGCCTCGATTCGAAGAGCTTGACACTACCAATATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAGGTTGATGACATGACGGCAGATTTCATCATAAGCCAACTACTCTTTCTTGATGCTGAAGACCCAACCAAAGATATTAAATTGTTTATCAACTCACCTGGTGGCTCTGTCACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCCGATGTTTCAACCGTTTGTCTGGGACTTGCCGCATCCATGGGAGCATTTCTTCTAGCCTCTGGTTCAAAGGGAAAGCGATTTTGCATGCCCAATGGAAGAGTGATGATCCATCAACCTCTTGGAACTGCTGGAGGAAAAGCAACAGAGATGAGCATTCGGATACGAGAAATGGCGTATCACAAGATTAAGCTAAACAAAATTTTTTCTAGAATCACTGGAAAGCCAATAGAGCAGATTGAATTGGACACAGAACGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATATGGTTTGATCGATGAAGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCTCCTCCGAAAACTCGAATCTGGGATCTATGGAAGGTTGAAGGGAGTCGAAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTGAAGAATGGATATGAAGAAGGGGGTCAAGGAAGTGACAAAGAGCGCGGTGGCCAGCAGGAAACAGAAGAACCAAGTCCTGTATGACACAGGACTCACCCTGTTCCTCTTCTTCCATCCCTCTGCCTCTATTGTTGTATCCGAGCTTGTTCTTTCCATTCTCAAATAGTTGTTTCTCTGTAAGATCTTAAGACGATTATTACCAATTTGTTAAACAGGCCTAGGTTTCGGAAAATTCAAGGGTCGTAACATTCCCTTTCTCTTCCCTTATCTAGACGCTAAAATATTGCTGGAGTCTGATATTGAATTTGTCTAGAAACCTTGGCTCAACGTTCAATGGGGAGCACCAATGACCA

Coding sequence (CDS)

ATGGAGTTGAGTTTCACACACGCACCTTCTCCTTCCCCTTATGGGCTTAAGCGTTCTGACCATGGATTTCAGTCTTCTCATTTTCCAATTTCTACTCCTTCCAAGCACTCCCATGGCGGCAATTTCACTTCTAATGCTTTTAGAATCAGAAATTGTTCGGTTCCGGTTGTAAACCACCCCTCGCATAGTTCCTCTTCTCTTAGACGCACCTTATCCAGTAATTGGGATGTTTTTAGCAACTATTCTGTATCTTCCGCTCGATCCTTGCCTCGATTCGAAGAGCTTGACACTACCAATATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAGGTTGATGACATGACGGCAGATTTCATCATAAGCCAACTACTCTTTCTTGATGCTGAAGACCCAACCAAAGATATTAAATTGTTTATCAACTCACCTGGTGGCTCTGTCACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCCGATGTTTCAACCGTTTGTCTGGGACTTGCCGCATCCATGGGAGCATTTCTTCTAGCCTCTGGTTCAAAGGGAAAGCGATTTTGCATGCCCAATGGAAGAGTGATGATCCATCAACCTCTTGGAACTGCTGGAGGAAAAGCAACAGAGATGAGCATTCGGATACGAGAAATGGCGTATCACAAGATTAAGCTAAACAAAATTTTTTCTAGAATCACTGGAAAGCCAATAGAGCAGATTGAATTGGACACAGAACGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATATGGTTTGATCGATGAAGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCTCCTCCGAAAACTCGAATCTGGGATCTATGGAAGGTTGAAGGGAGTCGAAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTGAAGAATGGATATGAAGAAGGGGGTCAAGGAAGTGACAAAGAGCGCGGTGGCCAGCAGGAAACAGAAGAACCAAGTCCTGTATGA

Protein sequence

MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHPSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV*

Homology

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BLAST of Cucsa.012750 vs. Swiss-Prot
Match: CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 3.6e-116
Identity = 213/279 (76.34%), Postives = 235/279 (84.23%), Query Frame = 1


Query: 47  FRIRNCSVPVVNHPSHSSSSL------RRTLSSNWDV--FSNYSVSSARS-LPRFEELDT 106
           F IRN  +P  + P    SS+      R+TLSSNWDV  FS  SV+ + S LP FEELDT
Sbjct: 27  FPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDT 86

Query: 107 TNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDA 166
           TNMLLRQRI+FLGSQVDDMTAD +ISQLL LDAED  +DI LFINSPGGS+TAGMGIYDA
Sbjct: 87  TNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDA 146

Query: 167 MKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRI 226
           MK CKADVSTVCLGLAASMGAFLLASGSKGKR+CMPN +VMIHQPLGTAGGKATEMSIRI
Sbjct: 147 MKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRI 206

Query: 227 REMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAP 286
           REM YHKIKLNKIFSRITGKP  +IE DT+RDNF+NPWEAKEYGLID VIDDGKPGLIAP
Sbjct: 207 REMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAP 266

Query: 287 IAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGY 317
           I + TPPPKT++WDLWKVEG++K   NLPSE  + +NGY
Sbjct: 267 IGDGTPPPKTKVWDLWKVEGTKKDNTNLPSERSMTQNGY 305

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BLAST of Cucsa.012750 vs. Swiss-Prot
Match: CLPP1_NOSS1 (ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 5.8e-58
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RI+FLG QVD   A+ I++QLLFLDAEDP KDI L+INSPGGSVTAGMGI+
Sbjct: 18  DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D MK  + DV T+C GLAASMGAFLL++G+KGKR  +P+ R+MIHQPLG A G+AT++ I
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 269
           + RE+ YHK +LN   +  TG+PIE+I  DTERD FM+P EAK+YGLID+VID
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVID 190

[Close]

BLAST of Cucsa.012750 vs. Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 9.9e-58
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 1


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RIIFLG QVD   A+ I++QLLFLDAEDP KDI L+INSPGGSVTAGMGI+
Sbjct: 18  DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D MK  + DV T+C GLAASMGAFLL++G+KGKR  +P+ R+MIHQPLG A G+AT++ I
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 269
           + RE+ YHK +LN   +  TG+PIE+I  DTERD FM+P EA++YGLID+VID
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVID 190

[Close]

BLAST of Cucsa.012750 vs. Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-56
Identity = 105/172 (61.05%), Postives = 139/172 (80.81%), Query Frame = 1


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RI+FLG+ VDD  AD I++QLLFL+AEDP KDI+L+INSPGGSVTAGM IY
Sbjct: 53  DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D M+    DV+T+C GLAASMGAFLL+ G++GKR  +P+ R+MIHQPLG A G+A ++ I
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 268
           + RE+ YHK  LN + ++ TG+P+E+IE+DT+RD FM+P EAK YGLID+V+
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

[Close]

BLAST of Cucsa.012750 vs. Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-56
Identity = 105/172 (61.05%), Postives = 139/172 (80.81%), Query Frame = 1


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RI+FLG+ VDD  AD I++QLLFL+AEDP KDI+L+INSPGGSVTAGM IY
Sbjct: 53  DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D M+    DV+T+C GLAASMGAFLL+ G++GKR  +P+ R+MIHQPLG A G+A ++ I
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 268
           + RE+ YHK  LN + ++ TG+P+E+IE+DT+RD FM+P EAK YGLID+V+
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

[Close]

BLAST of Cucsa.012750 vs. TrEMBL
Match: A0A0A0LA84_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G363170 PE=3 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 7.8e-195
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 1


Query: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60
           MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP
Sbjct: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60

Query: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120
           SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF
Sbjct: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120

Query: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180
           IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL
Sbjct: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180

Query: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240
           LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE
Sbjct: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240

Query: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300
           QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK
Sbjct: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300

Query: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV
Sbjct: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 339

[Close]

BLAST of Cucsa.012750 vs. TrEMBL
Match: A0A059ADE6_EUCGR (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_J01541 PE=3 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 7.5e-129
Identity = 238/298 (79.87%), Postives = 259/298 (86.91%), Query Frame = 1


Query: 48  RIRNCSVPVVNHPSHSSSSLRRTLSSNWDV-----FSNYSVS-SARSLPRFEELDTTNML 107
           R R C+V      S S S+ RRTLSS+WDV     FS  SVS +A  LPRFEELDTTNML
Sbjct: 34  RSRRCAVVRAVQGSSSLSAARRTLSSSWDVSGAGGFSISSVSPTAPRLPRFEELDTTNML 93

Query: 108 LRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLC 167
           LRQRIIFLGSQVDD+TADF+ISQLLFLDAEDPTKDI LFINSPGGSVTAGMGIYDAMKLC
Sbjct: 94  LRQRIIFLGSQVDDVTADFVISQLLFLDAEDPTKDINLFINSPGGSVTAGMGIYDAMKLC 153

Query: 168 KADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMA 227
           KADVST+CLGLAASMGAFLLASGSKGKRFCMPN RVMIHQPLGTAGGKAT+M IRIREM 
Sbjct: 154 KADVSTICLGLAASMGAFLLASGSKGKRFCMPNARVMIHQPLGTAGGKATDMGIRIREMV 213

Query: 228 YHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEA 287
           YHKIKLNKI SRITGKP EQ+ELDT+RDNFMN WEAKEYGL+D VIDDGKPGLIAPIA++
Sbjct: 214 YHKIKLNKILSRITGKPEEQVELDTDRDNFMNAWEAKEYGLVDGVIDDGKPGLIAPIADS 273

Query: 288 TPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
            PPPKTR+WD WK+EGSRKA+KNLPSE KIL+NG+  GGQG+D +RG  QE E P+PV
Sbjct: 274 APPPKTRVWDQWKIEGSRKARKNLPSEHKILENGF-TGGQGNDDDRGTVQENEAPTPV 330

[Close]

BLAST of Cucsa.012750 vs. TrEMBL
Match: B9T322_RICCO (ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_0326970 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 1.8e-127
Identity = 232/312 (74.36%), Postives = 266/312 (85.26%), Query Frame = 1


Query: 30  ISTPSKHSHGGNFTSNAFRIRNCSVPVVNHPSHSSSSLRRTLSSNWDV--FSNYSVSSAR 89
           I+T   +    + ++N  R +  SV  VN       + + TLSSNWDV  FS+   +S+ 
Sbjct: 31  INTTDSNKAKVSISTNGKRRKPISVKAVN-------TRKETLSSNWDVANFSSSFATSSP 90

Query: 90  SLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGS 149
           +LPRFEELDTTNMLLRQRIIFLGSQVDDMTADF+ISQLLFLDAEDPTKDIKLFINSPGGS
Sbjct: 91  ALPRFEELDTTNMLLRQRIIFLGSQVDDMTADFVISQLLFLDAEDPTKDIKLFINSPGGS 150

Query: 150 VTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAG 209
           VTAG+GIYDAMKLCKADVST+CLGLAASMGAFLLA+G+KGKRFCMPNGRVMIHQPLGTAG
Sbjct: 151 VTAGLGIYDAMKLCKADVSTICLGLAASMGAFLLAAGTKGKRFCMPNGRVMIHQPLGTAG 210

Query: 210 GKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 269
           GKATEMSIRIREM YHKIKLNKI SR TGKP+EQIE+DT+RDNFM+ WEAKEYGLID VI
Sbjct: 211 GKATEMSIRIREMNYHKIKLNKILSRATGKPVEQIEVDTDRDNFMSAWEAKEYGLIDVVI 270

Query: 270 DDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKER 329
           DDGKPGL+AP+ +A+PPPKTR+WDLWK+EG +KAKKNLPSE KIL+NGY  G QG D++R
Sbjct: 271 DDGKPGLVAPLTDASPPPKTRVWDLWKIEGGKKAKKNLPSEHKILRNGY-AGRQGDDEDR 330

Query: 330 GGQQETEEPSPV 340
           G  QE ++P+ V
Sbjct: 331 GTDQEKDDPASV 334

[Close]

BLAST of Cucsa.012750 vs. TrEMBL
Match: B9H362_POPTR (ATP-dependent Clp protease proteolytic subunit OS=Populus trichocarpa GN=POPTR_0004s09110g PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.7e-126
Identity = 224/281 (79.72%), Postives = 258/281 (91.81%), Query Frame = 1


Query: 61  SHSSSSLRRTLSSNWDV--FSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTA 120
           S  +++ R+TL+SNWDV  FS+++ +SA +LP+FEELDTTNMLLRQRIIFLGSQVDD+TA
Sbjct: 62  SFDANTARQTLASNWDVEKFSSFA-NSAPTLPKFEELDTTNMLLRQRIIFLGSQVDDVTA 121

Query: 121 DFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGA 180
           DFIISQLLFLDAEDP KDIKLFINSPGGSVTAG+GIYDAMKLCKADVST+CLGLAASMGA
Sbjct: 122 DFIISQLLFLDAEDPKKDIKLFINSPGGSVTAGLGIYDAMKLCKADVSTICLGLAASMGA 181

Query: 181 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP 240
           FLL++GSKGKRFCMPNGRVMIHQPLGTAGGKA+EMSIRIREM+YHKIKLNKI SRITGKP
Sbjct: 182 FLLSAGSKGKRFCMPNGRVMIHQPLGTAGGKASEMSIRIREMSYHKIKLNKILSRITGKP 241

Query: 241 IEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGS 300
           +EQ+E+DT+RDNFMN WEAKEYGL+DEVIDDGKPGL+AP+ +A+PPPKTR+WDLWK+EGS
Sbjct: 242 LEQVEVDTDRDNFMNAWEAKEYGLVDEVIDDGKPGLVAPLTDASPPPKTRVWDLWKIEGS 301

Query: 301 RKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           +KAK NLPSE K+L+NGY  GG G   +RG  +E E PSPV
Sbjct: 302 KKAKNNLPSEHKMLQNGYVGGGDG---DRGVDREKETPSPV 338

[Close]

BLAST of Cucsa.012750 vs. TrEMBL
Match: A0A067JRQ3_JATCU (ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_02507 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 5.9e-126
Identity = 236/320 (73.75%), Postives = 267/320 (83.44%), Query Frame = 1


Query: 19  SDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHPSHSSSSLRRTLSSNWDVF 78
           S+H F    F +  PS  +  G     + R  + SV  +N     +S  R TLSSNWDV 
Sbjct: 20  SNHSFIHKQFLL--PSSTTTDGKAAIISKRRESISVKALN-----TSIRRATLSSNWDVT 79

Query: 79  SNYS-VSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDI 138
           +  S  SSA +LPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDI
Sbjct: 80  NLSSFASSAPTLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDI 139

Query: 139 KLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRV 198
           KLFINSPGGSVTAG+GIYDAMKLCKADVST+CLGLAASMGAFLLA+G+KGKRFCMPNGRV
Sbjct: 140 KLFINSPGGSVTAGLGIYDAMKLCKADVSTICLGLAASMGAFLLAAGTKGKRFCMPNGRV 199

Query: 199 MIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEA 258
           MIHQPLGTAGGKATEMSIRIREM YHKIKLNKI SR TGKP+EQIE+DT+RDNFM+ W+A
Sbjct: 200 MIHQPLGTAGGKATEMSIRIREMNYHKIKLNKIMSRATGKPVEQIEVDTDRDNFMDAWQA 259

Query: 259 KEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYE 318
           KEYGL+D VIDDGKPGL+AP+A+A+PPPKTR+W+ WKVEGS+KA+KNLPSE KIL+NGY 
Sbjct: 260 KEYGLVDAVIDDGKPGLVAPLADASPPPKTRVWEFWKVEGSKKARKNLPSEHKILENGYL 319

Query: 319 EGGQGSDKERGGQQETEEPS 338
              QG D++RG   E EEP+
Sbjct: 320 R-VQGDDEDRGTNPEKEEPA 331

[Close]

BLAST of Cucsa.012750 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3)

HSP 1 Score: 419.5 bits (1077), Expect = 2.0e-117
Identity = 213/279 (76.34%), Postives = 235/279 (84.23%), Query Frame = 1


Query: 47  FRIRNCSVPVVNHPSHSSSSL------RRTLSSNWDV--FSNYSVSSARS-LPRFEELDT 106
           F IRN  +P  + P    SS+      R+TLSSNWDV  FS  SV+ + S LP FEELDT
Sbjct: 27  FPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDT 86

Query: 107 TNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDA 166
           TNMLLRQRI+FLGSQVDDMTAD +ISQLL LDAED  +DI LFINSPGGS+TAGMGIYDA
Sbjct: 87  TNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDA 146

Query: 167 MKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRI 226
           MK CKADVSTVCLGLAASMGAFLLASGSKGKR+CMPN +VMIHQPLGTAGGKATEMSIRI
Sbjct: 147 MKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRI 206

Query: 227 REMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAP 286
           REM YHKIKLNKIFSRITGKP  +IE DT+RDNF+NPWEAKEYGLID VIDDGKPGLIAP
Sbjct: 207 REMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAP 266

Query: 287 IAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGY 317
           I + TPPPKT++WDLWKVEG++K   NLPSE  + +NGY
Sbjct: 267 IGDGTPPPKTKVWDLWKVEGTKKDNTNLPSERSMTQNGY 305

[Close]

BLAST of Cucsa.012750 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-53
Identity = 110/228 (48.25%), Postives = 152/228 (66.67%), Query Frame = 1


Query: 60  PSHSSSSLRRTLSSNWDVFSNYSVSSAR---SLPRFEELDTTNMLLRQRIIFLGSQVDDM 119
           P+   S   RT S +   F+N S+  ++   S  R  E D   +LLR+RI+FLGS +DD 
Sbjct: 40  PTKLISPPLRTTSPSPLRFANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDF 99

Query: 120 TADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASM 179
            AD I+SQLL LDA+DP KDIKLFINSPGGS++A M IYD ++L +ADVST+ LG+AAS 
Sbjct: 100 VADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAAST 159

Query: 180 GAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITG 239
            + +L +G+KGKRF MPN R+MIHQPLG A G+A ++ I+ +E+ ++K  +  I +  T 
Sbjct: 160 ASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTS 219

Query: 240 KPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPP 285
           +  EQ+  D +RD +M+P EA EYGLID VID      + P+ +   P
Sbjct: 220 RSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVPDRVKP 267

[Close]

BLAST of Cucsa.012750 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5)

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-51
Identity = 101/177 (57.06%), Postives = 132/177 (74.58%), Query Frame = 1


Query: 91  RFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTA 150
           RF+ +   + L + RII  G  VDD  A+ I++QLL+LDA DPTKDI +++NSPGGSVTA
Sbjct: 111 RFQSI--ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTA 170

Query: 151 GMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKA 210
           GM I+D M+  + DVSTVC+GLAASMGAFLL++G+KGKR+ +PN R+MIHQPLG A G  
Sbjct: 171 GMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ 230

Query: 211 TEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 268
           T++ I+  EM +HK  LN   +  TG+ +E+I  DT+RD FM+  EAKEYGLID VI
Sbjct: 231 TDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of Cucsa.012750 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7)

HSP 1 Score: 168.3 bits (425), Expect = 8.1e-42
Identity = 77/174 (44.25%), Postives = 127/174 (72.99%), Query Frame = 1


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LL++RII +   ++D T+  +++QLL+L++E+P+K I +++NSPGG VTAG+ IY
Sbjct: 48  DIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIY 107

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D M+  ++ +ST+CLG AASM + LLA+G+KG+R  +PN  VMIHQP G   G+A +++I
Sbjct: 108 DTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITI 167

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDD 270
             +++      LN+++ + TG+P++ +  + +RD+FM P EAK +G+IDEVID+
Sbjct: 168 HTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of Cucsa.012750 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6)

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-36
Identity = 74/174 (42.53%), Postives = 112/174 (64.37%), Query Frame = 1


Query: 95  LDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGI 154
           LD +++L R RIIF+G  ++   A  +ISQL+ L + D   DI +++N PGGS  + + I
Sbjct: 113 LDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAI 172

Query: 155 YDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMS 214
           YD M   K  V TV  G+AAS GA LLA G KG R+ MPN RVMIHQP    GG   ++ 
Sbjct: 173 YDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVR 232

Query: 215 IRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 269
            ++ E    + K++++++  TG+P+E+++  TERD F++  EA E+GLID +++
Sbjct: 233 RQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLE 286

[Close]

BLAST of Cucsa.012750 vs. NCBI nr
Match: gi|778680955|ref|XP_011651427.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 1.1e-194
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 1


Query: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60
           MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP
Sbjct: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60

Query: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120
           SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF
Sbjct: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120

Query: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180
           IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL
Sbjct: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180

Query: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240
           LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE
Sbjct: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240

Query: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300
           QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK
Sbjct: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300

Query: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV
Sbjct: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 339

[Close]

BLAST of Cucsa.012750 vs. NCBI nr
Match: gi|659114541|ref|XP_008457103.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo])

HSP 1 Score: 637.5 bits (1643), Expect = 1.3e-179
Identity = 317/340 (93.24%), Postives = 326/340 (95.88%), Query Frame = 1


Query: 1   MELSFTHAPSPSPYGLKRSDHGFQ-SSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNH 60
           MELSFTHAPSPSPYGLKR DHG   SSH PISTPS HSHG NFTSN FRIRNCSVPV+NH
Sbjct: 1   MELSFTHAPSPSPYGLKRFDHGLHHSSHVPISTPSNHSHGRNFTSNNFRIRNCSVPVLNH 60

Query: 61  PSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTAD 120
           PS SSSSLRRTLSSNWDV SNYS SSA SLPRFEELDTTNMLLRQRIIFLGSQVDD+TAD
Sbjct: 61  PSLSSSSLRRTLSSNWDVLSNYSASSAPSLPRFEELDTTNMLLRQRIIFLGSQVDDVTAD 120

Query: 121 FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAF 180
           FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVST+CLGLAASMGAF
Sbjct: 121 FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 180

Query: 181 LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPI 240
           LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP+
Sbjct: 181 LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPL 240

Query: 241 EQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSR 300
           EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTR+WDLWKVEGSR
Sbjct: 241 EQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRVWDLWKVEGSR 300

Query: 301 KAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           KAKKNLPSESKILKNGY +GG+GSD+ERG QQETEEPSPV
Sbjct: 301 KAKKNLPSESKILKNGY-QGGEGSDEERGSQQETEEPSPV 339

[Close]

BLAST of Cucsa.012750 vs. NCBI nr
Match: gi|702478906|ref|XP_010032665.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 468.4 bits (1204), Expect = 1.1e-128
Identity = 238/298 (79.87%), Postives = 259/298 (86.91%), Query Frame = 1


Query: 48  RIRNCSVPVVNHPSHSSSSLRRTLSSNWDV-----FSNYSVS-SARSLPRFEELDTTNML 107
           R R C+V      S S S+ RRTLSS+WDV     FS  SVS +A  LPRFEELDTTNML
Sbjct: 34  RSRRCAVVRAVQGSSSLSAARRTLSSSWDVSGAGGFSISSVSPTAPRLPRFEELDTTNML 93

Query: 108 LRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLC 167
           LRQRIIFLGSQVDD+TADF+ISQLLFLDAEDPTKDI LFINSPGGSVTAGMGIYDAMKLC
Sbjct: 94  LRQRIIFLGSQVDDVTADFVISQLLFLDAEDPTKDINLFINSPGGSVTAGMGIYDAMKLC 153

Query: 168 KADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMA 227
           KADVST+CLGLAASMGAFLLASGSKGKRFCMPN RVMIHQPLGTAGGKAT+M IRIREM 
Sbjct: 154 KADVSTICLGLAASMGAFLLASGSKGKRFCMPNARVMIHQPLGTAGGKATDMGIRIREMV 213

Query: 228 YHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEA 287
           YHKIKLNKI SRITGKP EQ+ELDT+RDNFMN WEAKEYGL+D VIDDGKPGLIAPIA++
Sbjct: 214 YHKIKLNKILSRITGKPEEQVELDTDRDNFMNAWEAKEYGLVDGVIDDGKPGLIAPIADS 273

Query: 288 TPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
            PPPKTR+WD WK+EGSRKA+KNLPSE KIL+NG+  GGQG+D +RG  QE E P+PV
Sbjct: 274 APPPKTRVWDQWKIEGSRKARKNLPSEHKILENGF-TGGQGNDDDRGTVQENEAPTPV 330

[Close]

BLAST of Cucsa.012750 vs. NCBI nr
Match: gi|255583777|ref|XP_002532641.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Ricinus communis])

HSP 1 Score: 463.8 bits (1192), Expect = 2.6e-127
Identity = 232/312 (74.36%), Postives = 266/312 (85.26%), Query Frame = 1


Query: 30  ISTPSKHSHGGNFTSNAFRIRNCSVPVVNHPSHSSSSLRRTLSSNWDV--FSNYSVSSAR 89
           I+T   +    + ++N  R +  SV  VN       + + TLSSNWDV  FS+   +S+ 
Sbjct: 31  INTTDSNKAKVSISTNGKRRKPISVKAVN-------TRKETLSSNWDVANFSSSFATSSP 90

Query: 90  SLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGS 149
           +LPRFEELDTTNMLLRQRIIFLGSQVDDMTADF+ISQLLFLDAEDPTKDIKLFINSPGGS
Sbjct: 91  ALPRFEELDTTNMLLRQRIIFLGSQVDDMTADFVISQLLFLDAEDPTKDIKLFINSPGGS 150

Query: 150 VTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAG 209
           VTAG+GIYDAMKLCKADVST+CLGLAASMGAFLLA+G+KGKRFCMPNGRVMIHQPLGTAG
Sbjct: 151 VTAGLGIYDAMKLCKADVSTICLGLAASMGAFLLAAGTKGKRFCMPNGRVMIHQPLGTAG 210

Query: 210 GKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 269
           GKATEMSIRIREM YHKIKLNKI SR TGKP+EQIE+DT+RDNFM+ WEAKEYGLID VI
Sbjct: 211 GKATEMSIRIREMNYHKIKLNKILSRATGKPVEQIEVDTDRDNFMSAWEAKEYGLIDVVI 270

Query: 270 DDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKER 329
           DDGKPGL+AP+ +A+PPPKTR+WDLWK+EG +KAKKNLPSE KIL+NGY  G QG D++R
Sbjct: 271 DDGKPGLVAPLTDASPPPKTRVWDLWKIEGGKKAKKNLPSEHKILRNGY-AGRQGDDEDR 330

Query: 330 GGQQETEEPSPV 340
           G  QE ++P+ V
Sbjct: 331 GTDQEKDDPASV 334

[Close]

BLAST of Cucsa.012750 vs. NCBI nr
Match: gi|224079413|ref|XP_002305856.1| (hypothetical protein POPTR_0004s09110g [Populus trichocarpa])

HSP 1 Score: 459.9 bits (1182), Expect = 3.8e-126
Identity = 224/281 (79.72%), Postives = 258/281 (91.81%), Query Frame = 1


Query: 61  SHSSSSLRRTLSSNWDV--FSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTA 120
           S  +++ R+TL+SNWDV  FS+++ +SA +LP+FEELDTTNMLLRQRIIFLGSQVDD+TA
Sbjct: 62  SFDANTARQTLASNWDVEKFSSFA-NSAPTLPKFEELDTTNMLLRQRIIFLGSQVDDVTA 121

Query: 121 DFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGA 180
           DFIISQLLFLDAEDP KDIKLFINSPGGSVTAG+GIYDAMKLCKADVST+CLGLAASMGA
Sbjct: 122 DFIISQLLFLDAEDPKKDIKLFINSPGGSVTAGLGIYDAMKLCKADVSTICLGLAASMGA 181

Query: 181 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP 240
           FLL++GSKGKRFCMPNGRVMIHQPLGTAGGKA+EMSIRIREM+YHKIKLNKI SRITGKP
Sbjct: 182 FLLSAGSKGKRFCMPNGRVMIHQPLGTAGGKASEMSIRIREMSYHKIKLNKILSRITGKP 241

Query: 241 IEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGS 300
           +EQ+E+DT+RDNFMN WEAKEYGL+DEVIDDGKPGL+AP+ +A+PPPKTR+WDLWK+EGS
Sbjct: 242 LEQVEVDTDRDNFMNAWEAKEYGLVDEVIDDGKPGLVAPLTDASPPPKTRVWDLWKIEGS 301

Query: 301 RKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           +KAK NLPSE K+L+NGY  GG G   +RG  +E E PSPV
Sbjct: 302 KKAKNNLPSEHKMLQNGYVGGGDG---DRGVDREKETPSPV 338

The following BLAST results are available for this feature:

BLAST of Cucsa.012750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP3_ARATH	3.6e-116	76.34	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis t...	[more]
CLPP1_NOSS1	5.8e-58	64.16	ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 ...	[more]
CLPP1_ANAVT	9.9e-58	64.16	ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ...	[more]
CLPP2_SYNE7	1.9e-56	61.05	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]
CLPP3_SYNP6	1.9e-56	61.05	ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT...	[more]

BLAST of Cucsa.012750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA84_CUCSA	7.8e-195	100.00	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G36317...	[more]
A0A059ADE6_EUCGR	7.5e-129	79.87	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
B9T322_RICCO	1.8e-127	74.36	ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_03269...	[more]
B9H362_POPTR	2.7e-126	79.72	ATP-dependent Clp protease proteolytic subunit OS=Populus trichocarpa GN=POPTR_0...	[more]
A0A067JRQ3_JATCU	5.9e-126	73.75	ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_02507 ...	[more]

BLAST of Cucsa.012750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66670.1	2.0e-117	76.34	CLP protease proteolytic subunit 3	[more]
AT5G45390.1	1.2e-53	48.25	CLP protease P4	[more]
AT1G02560.1	2.5e-51	57.06	nuclear encoded CLP protease 5	[more]
AT5G23140.1	8.1e-42	44.25	nuclear-encoded CLP protease P7	[more]
AT1G11750.2	2.3e-36	42.53	CLP protease proteolytic subunit 6	[more]

BLAST of Cucsa.012750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680955\|ref\|XP_011651427.1\|	1.1e-194	100.00	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucu...	[more]
gi\|659114541\|ref\|XP_008457103.1\|	1.3e-179	93.24	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucu...	[more]
gi\|702478906\|ref\|XP_010032665.1\|	1.1e-128	79.87	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Euca...	[more]
gi\|255583777\|ref\|XP_002532641.1\|	2.6e-127	74.36	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Rici...	[more]
gi\|224079413\|ref\|XP_002305856.1\|	3.8e-126	79.72	hypothetical protein POPTR_0004s09110g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR018215	ClpP_Ser_AS
IPR023562	ClpP/TepA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.012750.1	Cucsa.012750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 96..111 score: 6.4E-47coord: 167..184 score: 6.4E-47coord: 245..264 score: 6.4E-47coord: 188..207 score: 6.4E-47coord: 136..156 score: 6.4
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 53..270 score: 37
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 167..178 scor
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 61..325 score: 1.1E
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 95..268 score: 3.0
None	No IPR available	PANTHER	PTHR10381:SF20	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 3, CHLOROPLASTIC	coord: 61..325 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.012750	Cla013153	Watermelon (97103) v1	cgywmB367
Cucsa.012750	Csa3G363170	Cucumber (Chinese Long) v2	cgycuB291
Cucsa.012750	MELO3C020312	Melon (DHL92) v3.5.1	cgymeB343
Cucsa.012750	ClCG05G010770	Watermelon (Charleston Gray)	cgywcgB345
Cucsa.012750	CSPI03G22240	Wild cucumber (PI 183967)	cgycpiB300
Cucsa.012750	CmaCh01G003440	Cucurbita maxima (Rimu)	cgycmaB0551
Cucsa.012750	CmoCh01G003620	Cucurbita moschata (Rifu)	cgycmoB0552
Cucsa.012750	Lsi05G002830	Bottle gourd (USVL1VR-Ls)	cgylsiB322
Cucsa.012750	Cp4.1LG02g16870	Cucurbita pepo (Zucchini)	cgycpeB0531
Cucsa.012750	MELO3C020312.2	Melon (DHL92) v3.6.1	cgymedB338
Cucsa.012750	CsaV3_3G021700	Cucumber (Chinese Long) v3	cgycucB303
Cucsa.012750	Cla97C05G093090	Watermelon (97103) v2	cgywmbB351
Cucsa.012750	Bhi01G001330	Wax gourd	cgywgoB393
Cucsa.012750	Carg07436	Silver-seed gourd	carcgyB0859

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.012750	Wild cucumber (PI 183967)	cgycpiB299
Cucsa.012750	Cucumber (Chinese Long) v2	cgycuB290