CsaV3_3G021700 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G021700
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr3 : 18847044 .. 18850754 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCAATCAATAGCGTTTTTATTATTTTTGAAATTGTTTTATACCTATCAATATTTTGACCATTTTTTAAAACACACCCAATAAAATTCAAACAAGATTGGAAAAGTAAGATTACAATTTAACGTAACATTAAAAGTGATTTTTCCCCTTCTTTTGTTACGATTGATGAAGTAAATTTGGGGGAAAATACTCTTTATATTGGTAGAGCAGCCCAATCTTTGGATTTCTTGTGGGTGCTTCCCCTTCTGCTCTCAATAGCGAAAATGGAGTTGAGTTTCACACACGCACCTTCTCCTTCCCCTTATGGGCTTAAGCGTTCTGACCATGGATTTCAGTCTTCTCATTTTCCAATTTCTACTCCTTCCAAGCACTCCCATGGCGGCAATTTCACTTCTAATGCTTTTAGAATCAGAAATTGTTCGGTTCCGGTTGTAAACCACCCCTCGCATAGTTCCTCTTCTCTTAGACGCACCTTATCCAGTAATTGGGATGTTTTTAGCAACTATTCTGTATCTTCCGCTCGATCCTTGCCTCGATTCGAAGAGCTTGACACTACCAATATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAGGCAATGTCTCCAACTATTTCCTCGTATTTCTTAATCAATTGGTTTGTTTCTACTTTCAGCGGTGTGTTGAATTCTGTTTAGCTTTTTTTAGGTTTGATTTTGTATTTGTTATATTGGGATTTTTGTTTGGATGGTTTGGGAGTTGTTTGAGTTGGAAGAAGAAGAGAGAATTTTTATTGGGACTTGAATATTGTATTGGGTACTGGCAGGTTGATGACATGACGGCAGATTTCATCATAAGCCAACTACTCTTTCTTGATGCTGAAGACCCAACAAAAGATATTAAATTGTTTATCAACTCACCTGGTGGCTCTGTCACTGCTGGTATTTTCCGTCATCAAGTCCTTACATTCTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTCAGACGGATAATTTTTAGTTTTAATTTGAAGTTGTTGGGTTGAAAGGATGCTGTCGTATAATCTTTATGGTTCAAATCTGCTTCCCACAGTATTCACGCCCTTCATTCTTTTATGATGGTTTTAGTACTCCTTGTTGCTCCAAACTGCTTGTGCGTGAGAGTGTAAAGTAAGTTACATAATCCAATATTTGGTACGCAAATGAGTTCAAGTGCCTTCTGTGTTGATCACGTGCATCAAAATAAACACATTCCAAAGTTTGGAATCATTGAAATATTTGAGAAATGACTTCATTATTCTCACTTCGGAAGTAGCTTGGGATCTGTCATTCTAAGTCAGGATCATAATCCATCAAGTTGTGAGACAAGAGCTTCTGTTATTCTATCGAATTACATTTCATCTTATGGTATTTTAACCAAGTTATTCTATATATATAGACACAGAGAGAGATGGAGAGAAGGAAACAATACAAAAGCAGACTAAAAGCCAAGTACACAAAAACCTCACTAAAGAAAGGTGCTCCAACTCAGTAAAATGTTGCCTAATGAATAATTACAAAAAGTCTTTGAAATTGAAGCCCATGAAAAGAAAGAGCTCCAGCGAGTCATTACGTTTTAGCACTATGGTTGTAACTTTTTTGATCGATGAAAATTATATTATATGGTATGTAGTGTGGCAATCATGGGGCAAGATTCCGGATGATATGCATATAGCCTGATTCAAGTTCAATTCAAATGATAATCTGTAAAGTATTTTCTGATTAGGAGGTTGCACAAACAGATCTCTGGTGTGGGGTTTGTTTTTTTCATTCAACATAATAATGATATTATAAATTATTTTGCAACGGCCCTTAGTTTTCCTCCTGGTTTCCCTGTAATTCAGAAGATACTTCAGCAGATGAAGTCACCTACCCATCCATGCAATAACCTCTTTATTTCTCCTTACTGAAAACTGCCCTTCTTATGTTCGTTTATCTCTTGTGTGATGATCTCTCCCTTCAATTATTTCAAGGCAAATGGATCTTTGTATATCCACATCTTTTTGGTCTACCTCTATTGTTGTAGGTTGTTATTTCAATCCATGTTTGTTTCTCAAATTTTTTATTGAATGTAGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCCGATGTTTCAACCGTTTGTCTGGGACTTGCCGCATCCATGGGAGCATTTCTTCTAGCCTCTGGTTCAAAGGGAAAGCGATTTTGCATGCCCAATGGAAGAGTGATGATCCATCAACCTCTTGGAACTGCTGGAGGAAAAGTGAGTAGATTATTGTTCTGTGCTTTGCTGTTAAGTTAATGGCTTTTCCAGTCGCTCTTGAATGTGTGCAGCATTTCTAAAATTCTTTGTTCATAATGTTTAGTGCTTGCATTGGATGGTAGGGAGTTGAAAATCAATAAGCCTCATAATAGCTTTTATGAACTTGATTTATTTGCGTTGAATTTTTTGGTAAAGGGACACAGCTTTGGCTCCACAAATAAGAGCATGGAATGAAATTCAGGAGTTTTTCTGAAATTATCGATATTGGCTTTTGATCTATTTAATAATTAATTAGTTGATTTAAGCTTTCAATTATGGGAGAACGCCTAATCAATTCACTGGTTACCCCATCTATGCCAGGCAACAGAGATGAGCATTCGGATACGAGAAATGGCGTATCACAAGATTAAGCTAAACAAAATTTTTTCTAGAATCACTGGAAAGCCAATAGAGCAGGTTTGCCAATATATTACTTTAACTACTTGGTTCTCAATTTTGTAAAGAAACCCTTTAGTATTTGTTTGTCCTTTGCAGATTGAATTGGACACAGAACGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATATGGTTTGATCGATGAAGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCTCCTCCGAAAACTCGAATCTGGGATCTATGGAAGGTTGAAGGGAGTCGAAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTGAAGAATGGATATGAAGAAGGGGGTCAAGGAAGTGACAAAGAGCGCGGTGGCCAGCAGGAAACAGAAGAACCAAGTCCTGTATGACACAGGACTCACCCTGTTCCTCTTCTTCCATCCCTCTGCCTCTATTGTTGTATCCGAGCTTGTTCTTTCCATTCTCAAATAGTTGTTTCTCTGTAAGATCTTAAGACGATTATTACCAATTTGTTAAACAGGCCTAGGTTTCGGAAAATTCAAGGGTCGTAACATTCCCTTTCTCTTCCCTTATCTAGACGCTAAAATATTGCTGGAGTCTGATATTGAATTTGTCTAGAAACCTTGGCTCAACGTTCAATGGGGAGCACCAATGACCATGTTTCTGAGTAAGTTGCTGCAACTTGGATGGAAGTTTGTATGAGTTTTGGCTGAGATTTGGATTAAGATGGAAGGCAGGTGATAATTTTGAATTCAAGGTTGTCATGCAATGCATTGCTAAATATTCTACATGATAGTTGGGGTAATTGCCTTCTATCCAACGTTTATTATTGAAGCTATTTGATGCATTTGCACTAATAGATGTTATTACCATCAATGTGTTTTTATATTTTTAAGAGGAAAAAAAATTAATTTTTTTAGTTTCATCAATTTCAAAATTTTAATTTATGTATATACACAATGCAGGATAGATTTTTTTTTTAAATGTCAATTGAGATATG

mRNA sequence

ATGGAGTTGAGTTTCACACACGCACCTTCTCCTTCCCCTTATGGGCTTAAGCGTTCTGACCATGGATTTCAGTCTTCTCATTTTCCAATTTCTACTCCTTCCAAGCACTCCCATGGCGGCAATTTCACTTCTAATGCTTTTAGAATCAGAAATTGTTCGGTTCCGGTTGTAAACCACCCCTCGCATAGTTCCTCTTCTCTTAGACGCACCTTATCCAGTAATTGGGATGTTTTTAGCAACTATTCTGTATCTTCCGCTCGATCCTTGCCTCGATTCGAAGAGCTTGACACTACCAATATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAGGTTGATGACATGACGGCAGATTTCATCATAAGCCAACTACTCTTTCTTGATGCTGAAGACCCAACAAAAGATATTAAATTGTTTATCAACTCACCTGGTGGCTCTGTCACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCCGATGTTTCAACCGTTTGTCTGGGACTTGCCGCATCCATGGGAGCATTTCTTCTAGCCTCTGGTTCAAAGGGAAAGCGATTTTGCATGCCCAATGGAAGAGTGATGATCCATCAACCTCTTGGAACTGCTGGAGGAAAAGCAACAGAGATGAGCATTCGGATACGAGAAATGGCGTATCACAAGATTAAGCTAAACAAAATTTTTTCTAGAATCACTGGAAAGCCAATAGAGCAGATTGAATTGGACACAGAACGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATATGGTTTGATCGATGAAGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCTCCTCCGAAAACTCGAATCTGGGATCTATGGAAGGTTGAAGGGAGTCGAAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTGAAGAATGGATATGAAGAAGGGGGTCAAGGAAGTGACAAAGAGCGCGGTGGCCAGCAGGAAACAGAAGAACCAAGTCCTGTATGA

Coding sequence (CDS)

ATGGAGTTGAGTTTCACACACGCACCTTCTCCTTCCCCTTATGGGCTTAAGCGTTCTGACCATGGATTTCAGTCTTCTCATTTTCCAATTTCTACTCCTTCCAAGCACTCCCATGGCGGCAATTTCACTTCTAATGCTTTTAGAATCAGAAATTGTTCGGTTCCGGTTGTAAACCACCCCTCGCATAGTTCCTCTTCTCTTAGACGCACCTTATCCAGTAATTGGGATGTTTTTAGCAACTATTCTGTATCTTCCGCTCGATCCTTGCCTCGATTCGAAGAGCTTGACACTACCAATATGCTTCTCCGCCAGCGAATCATCTTCTTGGGCTCTCAGGTTGATGACATGACGGCAGATTTCATCATAAGCCAACTACTCTTTCTTGATGCTGAAGACCCAACAAAAGATATTAAATTGTTTATCAACTCACCTGGTGGCTCTGTCACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCCGATGTTTCAACCGTTTGTCTGGGACTTGCCGCATCCATGGGAGCATTTCTTCTAGCCTCTGGTTCAAAGGGAAAGCGATTTTGCATGCCCAATGGAAGAGTGATGATCCATCAACCTCTTGGAACTGCTGGAGGAAAAGCAACAGAGATGAGCATTCGGATACGAGAAATGGCGTATCACAAGATTAAGCTAAACAAAATTTTTTCTAGAATCACTGGAAAGCCAATAGAGCAGATTGAATTGGACACAGAACGTGATAATTTTATGAATCCTTGGGAAGCTAAGGAATATGGTTTGATCGATGAAGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCTCCTCCGAAAACTCGAATCTGGGATCTATGGAAGGTTGAAGGGAGTCGAAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTGAAGAATGGATATGAAGAAGGGGGTCAAGGAAGTGACAAAGAGCGCGGTGGCCAGCAGGAAACAGAAGAACCAAGTCCTGTATGA

Protein sequence

MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHPSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV

Homology

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BLAST of CsaV3_3G021700 vs. NCBI nr
Match: XP_011651427.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus] >KGN57884.1 hypothetical protein Csa_3G363170 [Cucumis sativus])

HSP 1 Score: 677.6 bits (1747), Expect = 2.3e-191
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60
           MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP
Sbjct: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60

Query: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120
           SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF
Sbjct: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120

Query: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180
           IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL
Sbjct: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180

Query: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240
           LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE
Sbjct: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240

Query: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300
           QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK
Sbjct: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300

Query: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV
Sbjct: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 339

[Close]

BLAST of CsaV3_3G021700 vs. NCBI nr
Match: XP_008457103.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo])

HSP 1 Score: 627.9 bits (1618), Expect = 2.1e-176
Identity = 317/340 (93.24%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYGLKRSDHGF-QSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNH 60
           MELSFTHAPSPSPYGLKR DHG   SSH PISTPS HSHG NFTSN FRIRNCSVPV+NH
Sbjct: 1   MELSFTHAPSPSPYGLKRFDHGLHHSSHVPISTPSNHSHGRNFTSNNFRIRNCSVPVLNH 60

Query: 61  PSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTAD 120
           PS SSSSLRRTLSSNWDV SNYS SSA SLPRFEELDTTNMLLRQRIIFLGSQVDD+TAD
Sbjct: 61  PSLSSSSLRRTLSSNWDVLSNYSASSAPSLPRFEELDTTNMLLRQRIIFLGSQVDDVTAD 120

Query: 121 FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAF 180
           FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVST+CLGLAASMGAF
Sbjct: 121 FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 180

Query: 181 LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPI 240
           LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP+
Sbjct: 181 LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPL 240

Query: 241 EQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSR 300
           EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTR+WDLWKVEGSR
Sbjct: 241 EQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRVWDLWKVEGSR 300

Query: 301 KAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           KAKKNLPSESKILKNGY +GG+GSD+ERG QQETEEPSPV
Sbjct: 301 KAKKNLPSESKILKNGY-QGGEGSDEERGSQQETEEPSPV 339

[Close]

BLAST of CsaV3_3G021700 vs. NCBI nr
Match: XP_022143418.1 (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica charantia])

HSP 1 Score: 559.7 bits (1441), Expect = 6.9e-156
Identity = 288/339 (84.96%), Postives = 305/339 (89.97%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60
           ME+SFT+ PSPSP  L R DHG  SS FP+ TP KHSHGGN + N  R    S P+V   
Sbjct: 1   MEMSFTYTPSPSPQRLMRFDHGVLSSQFPLFTPRKHSHGGNSSLNGLRTPK-SAPLVK-A 60

Query: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120
           S SSSS+RRTLSSNWDV  N+S +SA SL RFEELDTTNMLLRQRIIFLGSQVDDMTADF
Sbjct: 61  SLSSSSMRRTLSSNWDVLENFSATSAPSLARFEELDTTNMLLRQRIIFLGSQVDDMTADF 120

Query: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180
           IISQLLFLDAED TKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL
Sbjct: 121 IISQLLFLDAEDSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180

Query: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240
           LA+GSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP+E
Sbjct: 181 LAAGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLE 240

Query: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300
           QIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIA+A  PPKTR+WDLWKVEGSRK
Sbjct: 241 QIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIADAAAPPKTRVWDLWKVEGSRK 300

Query: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           AKKNLPSE KIL+NGY +GGQG+D+ERG QQETEEPSPV
Sbjct: 301 AKKNLPSEDKILQNGY-QGGQGNDEERGTQQETEEPSPV 336

[Close]

BLAST of CsaV3_3G021700 vs. NCBI nr
Match: XP_022948597.1 (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 548.9 bits (1413), Expect = 1.2e-152
Identity = 285/340 (83.82%), Postives = 305/340 (89.71%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYG-LKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVN- 60
           MELSFT+APSPS +  L   +HG  +S FP+STP KHSHG N +SNAFRIR  SVPV   
Sbjct: 1   MELSFTYAPSPSLHSRLMCFNHGVLASPFPVSTPFKHSHGANSSSNAFRIRK-SVPVAAV 60

Query: 61  HPSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTA 120
             S SSS LRRTLSSNWDV  NYS +SA +LPRFEELDTTNMLLRQRIIFLGSQVDDMTA
Sbjct: 61  KASLSSSPLRRTLSSNWDVLGNYSAASAPALPRFEELDTTNMLLRQRIIFLGSQVDDMTA 120

Query: 121 DFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGA 180
           DFIISQLLFLDAEDPTKDIKL INSPGGSVTAGMGIYDAMKLCKADVSTVC+GLAASMGA
Sbjct: 121 DFIISQLLFLDAEDPTKDIKLLINSPGGSVTAGMGIYDAMKLCKADVSTVCMGLAASMGA 180

Query: 181 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP 240
           FLLA+GSKGKRFCMPNGRVMIHQPLGTAGG+AT+MSIR+REMAYHKIKLNKI SRITGKP
Sbjct: 181 FLLAAGSKGKRFCMPNGRVMIHQPLGTAGGRATDMSIRLREMAYHKIKLNKILSRITGKP 240

Query: 241 IEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGS 300
           +EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEA PPPKTR+WDLWK+EGS
Sbjct: 241 LEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEANPPPKTRVWDLWKIEGS 300

Query: 301 RKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSP 339
           RKAKKNLPSE+KIL+NGY    QGSD+ER  Q ETEEPSP
Sbjct: 301 RKAKKNLPSETKILQNGY----QGSDEERSPQPETEEPSP 335

[Close]

BLAST of CsaV3_3G021700 vs. NCBI nr
Match: XP_022997788.1 (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 545.4 bits (1404), Expect = 1.3e-151
Identity = 284/340 (83.53%), Postives = 303/340 (89.12%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYG-LKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVN- 60
           MELSFT+A SPS +  L   +HG  +S FP+STP KHSHG N +SNAFRIR  SVPV   
Sbjct: 1   MELSFTYAASPSLHSRLMCYNHGVLASPFPVSTPFKHSHGANSSSNAFRIRK-SVPVAAV 60

Query: 61  HPSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTA 120
             S SSS LRRTLSSNWDV  NYS +S  +LPRFEELDTTNMLLRQRIIFLGSQVDDMTA
Sbjct: 61  KASLSSSPLRRTLSSNWDVLGNYSAASTPALPRFEELDTTNMLLRQRIIFLGSQVDDMTA 120

Query: 121 DFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGA 180
           DFIISQLLFLDAEDPTKDIKL INSPGGSVTAGMGIYDAMKLCKADVSTVC+GLAASMGA
Sbjct: 121 DFIISQLLFLDAEDPTKDIKLLINSPGGSVTAGMGIYDAMKLCKADVSTVCMGLAASMGA 180

Query: 181 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP 240
           FLLASGSKGKRFCMPNGRVMIHQPLGTAGG+AT+MSIR+REMAYHKIKLNKI SRITGKP
Sbjct: 181 FLLASGSKGKRFCMPNGRVMIHQPLGTAGGRATDMSIRLREMAYHKIKLNKILSRITGKP 240

Query: 241 IEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGS 300
           +EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEA PPPKTR+WDLWK+EGS
Sbjct: 241 LEQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEANPPPKTRVWDLWKIEGS 300

Query: 301 RKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSP 339
           RKAKKNLPSE+KIL+NGY    QGSD+ER  Q ETEEPSP
Sbjct: 301 RKAKKNLPSETKILQNGY----QGSDEERSPQPETEEPSP 335

[Close]

BLAST of CsaV3_3G021700 vs. TAIR10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3)

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-116
Identity = 215/279 (77.06%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 47  FRIRNCSVPVVNHP--SHSSSSL----RRTLSSNWDV--FSNYSVSSARS-LPRFEELDT 106
           F IRN  +P  + P    SS SL    R+TLSSNWDV  FS  SV+ + S LP FEELDT
Sbjct: 27  FPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDT 86

Query: 107 TNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDA 166
           TNMLLRQRI+FLGSQVDDMTAD +ISQLL LDAED  +DI LFINSPGGS+TAGMGIYDA
Sbjct: 87  TNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDA 146

Query: 167 MKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRI 226
           MK CKADVSTVCLGLAASMGAFLLASGSKGKR+CMPN +VMIHQPLGTAGGKATEMSIRI
Sbjct: 147 MKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRI 206

Query: 227 REMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAP 286
           REM YHKIKLNKIFSRITGKP  +IE DT+RDNF+NPWEAKEYGLID VIDDGKPGLIAP
Sbjct: 207 REMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAP 266

Query: 287 IAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGY 317
           I + TPPPKT++WDLWKVEG++K   NLPSE  + +NGY
Sbjct: 267 IGDGTPPPKTKVWDLWKVEGTKKDNTNLPSERSMTQNGY 305

[Close]

BLAST of CsaV3_3G021700 vs. TAIR10
Match: AT5G45390.1 (CLP protease P4)

HSP 1 Score: 205.3 bits (521), Expect = 6.0e-53
Identity = 105/210 (50.00%), Postives = 145/210 (69.05%), Query Frame = 0


Query: 78  FSNYSVSSAR---SLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPT 137
           F+N S+  ++   S  R  E D   +LLR+RI+FLGS +DD  AD I+SQLL LDA+DP 
Sbjct: 58  FANASIEMSQTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPK 117

Query: 138 KDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPN 197
           KDIKLFINSPGGS++A M IYD ++L +ADVST+ LG+AAS  + +L +G+KGKRF MPN
Sbjct: 118 KDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPN 177

Query: 198 GRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNP 257
            R+MIHQPLG A G+A ++ I+ +E+ ++K  +  I +  T +  EQ+  D +RD +M+P
Sbjct: 178 TRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSP 237

Query: 258 WEAKEYGLIDEVIDDGKPGLIAPIAEATPP 285
            EA EYGLID VID      + P+ +   P
Sbjct: 238 IEAVEYGLIDGVIDGDSIIPLEPVPDRVKP 267

[Close]

BLAST of CsaV3_3G021700 vs. TAIR10
Match: AT1G02560.1 (nuclear encoded CLP protease 5)

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-51
Identity = 101/177 (57.06%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 91  RFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTA 150
           RF+ +   + L + RII  G  VDD  A+ I++QLL+LDA DPTKDI +++NSPGGSVTA
Sbjct: 111 RFQSI--ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTA 170

Query: 151 GMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKA 210
           GM I+D M+  + DVSTVC+GLAASMGAFLL++G+KGKR+ +PN R+MIHQPLG A G  
Sbjct: 171 GMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ 230

Query: 211 TEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 268
           T++ I+  EM +HK  LN   +  TG+ +E+I  DT+RD FM+  EAKEYGLID VI
Sbjct: 231 TDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285

[Close]

BLAST of CsaV3_3G021700 vs. TAIR10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-41
Identity = 77/174 (44.25%), Postives = 127/174 (72.99%), Query Frame = 0


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LL++RII +   ++D T+  +++QLL+L++E+P+K I +++NSPGG VTAG+ IY
Sbjct: 48  DIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIY 107

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D M+  ++ +ST+CLG AASM + LLA+G+KG+R  +PN  VMIHQP G   G+A +++I
Sbjct: 108 DTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITI 167

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDD 270
             +++      LN+++ + TG+P++ +  + +RD+FM P EAK +G+IDEVID+
Sbjct: 168 HTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDE 221

[Close]

BLAST of CsaV3_3G021700 vs. TAIR10
Match: AT1G11750.2 (CLP protease proteolytic subunit 6)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-36
Identity = 74/174 (42.53%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 95  LDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGI 154
           LD +++L R RIIF+G  ++   A  +ISQL+ L + D   DI +++N PGGS  + + I
Sbjct: 113 LDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAI 172

Query: 155 YDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMS 214
           YD M   K  V TV  G+AAS GA LLA G KG R+ MPN RVMIHQP    GG   ++ 
Sbjct: 173 YDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVR 232

Query: 215 IRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 269
            ++ E    + K++++++  TG+P+E+++  TERD F++  EA E+GLID +++
Sbjct: 233 RQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLE 286

[Close]

BLAST of CsaV3_3G021700 vs. Swiss-Prot
Match: sp|Q9SXJ6|CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.4e-115
Identity = 215/279 (77.06%), Postives = 236/279 (84.59%), Query Frame = 0


Query: 47  FRIRNCSVPVVNHP--SHSSSSL----RRTLSSNWDV--FSNYSVSSARS-LPRFEELDT 106
           F IRN  +P  + P    SS SL    R+TLSSNWDV  FS  SV+ + S LP FEELDT
Sbjct: 27  FPIRNHRIPKTSKPFCVRSSMSLSKPPRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDT 86

Query: 107 TNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDA 166
           TNMLLRQRI+FLGSQVDDMTAD +ISQLL LDAED  +DI LFINSPGGS+TAGMGIYDA
Sbjct: 87  TNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDA 146

Query: 167 MKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRI 226
           MK CKADVSTVCLGLAASMGAFLLASGSKGKR+CMPN +VMIHQPLGTAGGKATEMSIRI
Sbjct: 147 MKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRI 206

Query: 227 REMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAP 286
           REM YHKIKLNKIFSRITGKP  +IE DT+RDNF+NPWEAKEYGLID VIDDGKPGLIAP
Sbjct: 207 REMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAP 266

Query: 287 IAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGY 317
           I + TPPPKT++WDLWKVEG++K   NLPSE  + +NGY
Sbjct: 267 IGDGTPPPKTKVWDLWKVEGTKKDNTNLPSERSMTQNGY 305

[Close]

BLAST of CsaV3_3G021700 vs. Swiss-Prot
Match: sp|Q8YXH5|CLPP1_NOSS1 (ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 7.7e-58
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RI+FLG QVD   A+ I++QLLFLDAEDP KDI L+INSPGGSVTAGMGI+
Sbjct: 18  DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D MK  + DV T+C GLAASMGAFLL++G+KGKR  +P+ R+MIHQPLG A G+AT++ I
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 269
           + RE+ YHK +LN   +  TG+PIE+I  DTERD FM+P EAK+YGLID+VID
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVID 190

[Close]

BLAST of CsaV3_3G021700 vs. Swiss-Prot
Match: sp|Q3MFR5|CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-57
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RIIFLG QVD   A+ I++QLLFLDAEDP KDI L+INSPGGSVTAGMGI+
Sbjct: 18  DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D MK  + DV T+C GLAASMGAFLL++G+KGKR  +P+ R+MIHQPLG A G+AT++ I
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVID 269
           + RE+ YHK +LN   +  TG+PIE+I  DTERD FM+P EA++YGLID+VID
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVID 190

[Close]

BLAST of CsaV3_3G021700 vs. Swiss-Prot
Match: sp|O34125|CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.5e-56
Identity = 105/172 (61.05%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RI+FLG+ VDD  AD I++QLLFL+AEDP KDI+L+INSPGGSVTAGM IY
Sbjct: 53  DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D M+    DV+T+C GLAASMGAFLL+ G++GKR  +P+ R+MIHQPLG A G+A ++ I
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 268
           + RE+ YHK  LN + ++ TG+P+E+IE+DT+RD FM+P EAK YGLID+V+
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

[Close]

BLAST of CsaV3_3G021700 vs. Swiss-Prot
Match: sp|Q5N1P6|CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpP3 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.5e-56
Identity = 105/172 (61.05%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 96  DTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIY 155
           D  + LLR+RI+FLG+ VDD  AD I++QLLFL+AEDP KDI+L+INSPGGSVTAGM IY
Sbjct: 53  DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112

Query: 156 DAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSI 215
           D M+    DV+T+C GLAASMGAFLL+ G++GKR  +P+ R+MIHQPLG A G+A ++ I
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172

Query: 216 RIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVI 268
           + RE+ YHK  LN + ++ TG+P+E+IE+DT+RD FM+P EAK YGLID+V+
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224

[Close]

BLAST of CsaV3_3G021700 vs. TrEMBL
Match: tr|A0A0A0LA84|A0A0A0LA84_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G363170 PE=3 SV=1)

HSP 1 Score: 677.6 bits (1747), Expect = 1.5e-191
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60
           MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP
Sbjct: 1   MELSFTHAPSPSPYGLKRSDHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNHP 60

Query: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120
           SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF
Sbjct: 61  SHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADF 120

Query: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180
           IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL
Sbjct: 121 IISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFL 180

Query: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240
           LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE
Sbjct: 181 LASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIE 240

Query: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300
           QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK
Sbjct: 241 QIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRK 300

Query: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV
Sbjct: 301 AKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 339

[Close]

BLAST of CsaV3_3G021700 vs. TrEMBL
Match: tr|A0A1S3C615|A0A1S3C615_CUCME (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103496858 PE=3 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 1.4e-176
Identity = 317/340 (93.24%), Postives = 326/340 (95.88%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYGLKRSDHGF-QSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVVNH 60
           MELSFTHAPSPSPYGLKR DHG   SSH PISTPS HSHG NFTSN FRIRNCSVPV+NH
Sbjct: 1   MELSFTHAPSPSPYGLKRFDHGLHHSSHVPISTPSNHSHGRNFTSNNFRIRNCSVPVLNH 60

Query: 61  PSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTAD 120
           PS SSSSLRRTLSSNWDV SNYS SSA SLPRFEELDTTNMLLRQRIIFLGSQVDD+TAD
Sbjct: 61  PSLSSSSLRRTLSSNWDVLSNYSASSAPSLPRFEELDTTNMLLRQRIIFLGSQVDDVTAD 120

Query: 121 FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAF 180
           FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVST+CLGLAASMGAF
Sbjct: 121 FIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAF 180

Query: 181 LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPI 240
           LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKP+
Sbjct: 181 LLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPL 240

Query: 241 EQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSR 300
           EQIELDT+RDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTR+WDLWKVEGSR
Sbjct: 241 EQIELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRVWDLWKVEGSR 300

Query: 301 KAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
           KAKKNLPSESKILKNGY +GG+GSD+ERG QQETEEPSPV
Sbjct: 301 KAKKNLPSESKILKNGY-QGGEGSDEERGSQQETEEPSPV 339

[Close]

BLAST of CsaV3_3G021700 vs. TrEMBL
Match: tr|A0A2P4J384|A0A2P4J384_QUESU (ATP-dependent Clp protease proteolytic subunit OS=Quercus suber OX=58331 GN=CFP56_14282 PE=3 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.0e-127
Identity = 241/321 (75.08%), Postives = 268/321 (83.49%), Query Frame = 0


Query: 20  DHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSV-PVVNHPSHSSSSLRRTLSSNWDVF 79
           +HG   S FPI T  +     N T     IR  S+ P+    +  SSS ++TLS+NWDVF
Sbjct: 4   NHGVLHSQFPIVTIIRK----NTTGLISNIRKRSIKPISTIKALKSSSSKQTLSTNWDVF 63

Query: 80  SNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIK 139
            +YS +SA  LPRFEELDTTNMLLRQRI+FLGSQVDDMTAD IISQLLFLDAED  KDIK
Sbjct: 64  QDYSATSAPWLPRFEELDTTNMLLRQRILFLGSQVDDMTADLIISQLLFLDAEDSKKDIK 123

Query: 140 LFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVM 199
           LFINSPGGS+TAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLA+GSKGKRFCMPN RVM
Sbjct: 124 LFINSPGGSITAGMGIYDAMKLCKADVSTVCLGLAASMGAFLLAAGSKGKRFCMPNARVM 183

Query: 200 IHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAK 259
           IHQPLGT+GGK T+MSIRIREM YHKIKLNKI SRIT KPIEQIE DT+RDNFMNPWEAK
Sbjct: 184 IHQPLGTSGGKVTDMSIRIREMMYHKIKLNKILSRITEKPIEQIEADTDRDNFMNPWEAK 243

Query: 260 EYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEE 319
           EYGLIDEVIDDGKPGL+API +A+PPPKTR+WDLWKVEG RKAKKNLP+E  +L+NG ++
Sbjct: 244 EYGLIDEVIDDGKPGLVAPIGDASPPPKTRVWDLWKVEGGRKAKKNLPTEHTLLQNG-DK 303

Query: 320 GGQGSDKERGGQQETEEPSPV 340
           GGQ  D ERG +QE   P+PV
Sbjct: 304 GGQEGDGERGTEQEKPAPAPV 319

[Close]

BLAST of CsaV3_3G021700 vs. TrEMBL
Match: tr|A0A059ADE6|A0A059ADE6_EUCGR (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01541 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.3e-126
Identity = 238/298 (79.87%), Postives = 259/298 (86.91%), Query Frame = 0


Query: 48  RIRNCSVPVVNHPSHSSSSLRRTLSSNWDV-----FSNYSVS-SARSLPRFEELDTTNML 107
           R R C+V      S S S+ RRTLSS+WDV     FS  SVS +A  LPRFEELDTTNML
Sbjct: 34  RSRRCAVVRAVQGSSSLSAARRTLSSSWDVSGAGGFSISSVSPTAPRLPRFEELDTTNML 93

Query: 108 LRQRIIFLGSQVDDMTADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLC 167
           LRQRIIFLGSQVDD+TADF+ISQLLFLDAEDPTKDI LFINSPGGSVTAGMGIYDAMKLC
Sbjct: 94  LRQRIIFLGSQVDDVTADFVISQLLFLDAEDPTKDINLFINSPGGSVTAGMGIYDAMKLC 153

Query: 168 KADVSTVCLGLAASMGAFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMA 227
           KADVST+CLGLAASMGAFLLASGSKGKRFCMPN RVMIHQPLGTAGGKAT+M IRIREM 
Sbjct: 154 KADVSTICLGLAASMGAFLLASGSKGKRFCMPNARVMIHQPLGTAGGKATDMGIRIREMV 213

Query: 228 YHKIKLNKIFSRITGKPIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEA 287
           YHKIKLNKI SRITGKP EQ+ELDT+RDNFMN WEAKEYGL+D VIDDGKPGLIAPIA++
Sbjct: 214 YHKIKLNKILSRITGKPEEQVELDTDRDNFMNAWEAKEYGLVDGVIDDGKPGLIAPIADS 273

Query: 288 TPPPKTRIWDLWKVEGSRKAKKNLPSESKILKNGYEEGGQGSDKERGGQQETEEPSPV 340
            PPPKTR+WD WK+EGSRKA+KNLPSE KIL+NG+  GGQG+D +RG  QE E P+PV
Sbjct: 274 APPPKTRVWDQWKIEGSRKARKNLPSEHKILENGF-TGGQGNDDDRGTVQENEAPTPV 330

[Close]

BLAST of CsaV3_3G021700 vs. TrEMBL
Match: tr|A0A2I4EC12|A0A2I4EC12_9ROSI (ATP-dependent Clp protease proteolytic subunit OS=Juglans regia OX=51240 GN=LOC108988211 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 1.7e-126
Identity = 247/324 (76.23%), Postives = 269/324 (83.02%), Query Frame = 0


Query: 1   MELSFTHAPSPSPYGLKRS---DHGFQSSHFPISTPSKHSHGGNFTSNAFRIRNCSVPVV 60
           ME+S T A SPS     RS   +HG      P+ T  K +  GN T +  R R   V  +
Sbjct: 1   MEMSLTSAASPS-----RSMCFNHGALHPKSPVVTIKKIA-TGNATGSGRRRRRSPVSAI 60

Query: 61  NHPSHSSSSLRRTLSSNWDVFSNYSVSSARSLPRFEELDTTNMLLRQRIIFLGSQVDDMT 120
              + +SSS ++TLSSNWD+  +YS  SA  LP FEELDTTNMLLRQRIIFLGSQVDDMT
Sbjct: 61  K--ALNSSSSKQTLSSNWDISQDYSAISAPWLPSFEELDTTNMLLRQRIIFLGSQVDDMT 120

Query: 121 ADFIISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMG 180
           AD IISQLLFLDAED  KDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMG
Sbjct: 121 ADLIISQLLFLDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMG 180

Query: 181 AFLLASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGK 240
           AF+LASG+KGKRFCMPN RVMIHQPLGTAGGKATEM IRIREMAYHKIKLNKIFSRITGK
Sbjct: 181 AFILASGAKGKRFCMPNARVMIHQPLGTAGGKATEMGIRIREMAYHKIKLNKIFSRITGK 240

Query: 241 PIEQIELDTERDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRIWDLWKVEG 300
           P+EQIE DT+RDNFMNPW AKEYGLID VIDDGKPGL+APIA+ATPPPKTR+WDLWKVEG
Sbjct: 241 PLEQIEADTDRDNFMNPWVAKEYGLIDAVIDDGKPGLVAPIADATPPPKTRVWDLWKVEG 300

Query: 301 SRKAKKNLPSESKILKNGYEEGGQ 322
           SRKAKKNLPSE KIL++GY +GGQ
Sbjct: 301 SRKAKKNLPSEHKILESGY-KGGQ 315

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651427.1	2.3e-191	100.00	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucu...	[more]
XP_008457103.1	2.1e-176	93.24	PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucu...	[more]
XP_022143418.1	6.9e-156	84.96	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica chara...	[more]
XP_022948597.1	1.2e-152	83.82	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucurbita mosch...	[more]
XP_022997788.1	1.3e-151	83.53	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucurbita maxim...	[more]

BLAST of CsaV3_3G021700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66670.1	1.3e-116	77.06	CLP protease proteolytic subunit 3	[more]
AT5G45390.1	6.0e-53	50.00	CLP protease P4	[more]
AT1G02560.1	2.5e-51	57.06	nuclear encoded CLP protease 5	[more]
AT5G23140.1	1.1e-41	44.25	nuclear-encoded CLP protease P7	[more]
AT1G11750.2	3.0e-36	42.53	CLP protease proteolytic subunit 6	[more]

BLAST of CsaV3_3G021700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SXJ6\|CLPP3_ARATH	2.4e-115	77.06	ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q8YXH5\|CLPP1_NOSS1	7.7e-58	64.16	ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 ...	[more]
sp\|Q3MFR5\|CLPP1_ANAVT	1.3e-57	64.16	ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ...	[more]
sp\|O34125\|CLPP2_SYNE7	2.5e-56	61.05	ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (str...	[more]
sp\|Q5N1P6\|CLPP3_SYNP6	2.5e-56	61.05	ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain AT...	[more]

BLAST of CsaV3_3G021700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LA84\|A0A0A0LA84_CUCSA	1.5e-191	100.00	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A1S3C615\|A0A1S3C615_CUCME	1.4e-176	93.24	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2P4J384\|A0A2P4J384_QUESU	2.0e-127	75.08	ATP-dependent Clp protease proteolytic subunit OS=Quercus suber OX=58331 GN=CFP5...	[more]
tr\|A0A059ADE6\|A0A059ADE6_EUCGR	1.3e-126	79.87	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis OX=71139 GN...	[more]
tr\|A0A2I4EC12\|A0A2I4EC12_9ROSI	1.7e-126	76.23	ATP-dependent Clp protease proteolytic subunit OS=Juglans regia OX=51240 GN=LOC1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **INTERPRO**
Term	Definition
IPR029045	ClpP/crotonase-like_dom_sf
IPR033135	ClpP_His_AS
IPR018215	ClpP_Ser_AS
IPR023562	ClpP/TepA
IPR001907	ClpP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G021700.1	CsaV3_3G021700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 96..111 score: 46.25 coord: 167..184 score: 66.67 coord: 245..264 score: 58.88 coord: 188..207 score: 52.0 coord: 136..156 score: 64.64
IPR001907	ATP-dependent Clp protease proteolytic subunit	HAMAP	MF_00444	ClpP	coord: 53..270 score: 37.223
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 96..266 e-value: 3.04325E-101 score: 297.431
None	No IPR available	GENE3D	G3DSA:3.90.226.10		coord: 81..271 e-value: 8.0E-68 score: 230.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..339
None	No IPR available	PANTHER	PTHR10381:SF20	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 3, CHLOROPLASTIC	coord: 64..326
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 95..268 e-value: 2.4E-73 score: 245.8
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 64..326
IPR018215	ClpP, Ser active site	PROSITE	PS00381	CLP_PROTEASE_SER	coord: 167..178
IPR033135	ClpP, histidine active site	PROSITE	PS00382	CLP_PROTEASE_HIS	coord: 189..202
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	SSF52096	ClpP/crotonase	coord: 94..269

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G021700	CSPI03G22240	Wild cucumber (PI 183967)	cpicucB153
CsaV3_3G021700	Cucsa.012750	Cucumber (Gy14) v1	cgycucB303
CsaV3_3G021700	CmaCh01G003440	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G021700	CmoCh01G003620	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G021700	Cp4.1LG02g16870	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G021700	CsGy3G021100	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G021700	Carg07436	Silver-seed gourd	carcucB0801
CsaV3_3G021700	Cla013153	Watermelon (97103) v1	cucwmB254
CsaV3_3G021700	MELO3C020312	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G021700	ClCG05G010770	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G021700	Lsi05G002830	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G021700	MELO3C020312.2	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G021700	Cla97C05G093090	Watermelon (97103) v2	cucwmbB220
CsaV3_3G021700	Bhi01G001330	Wax gourd	cucwgoB296

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G021700	Wild cucumber (PI 183967)	cpicucB144