Cucsa.010900 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.010900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription initiation factor TFIID subunit 7
Location	scaffold00154 : 259837 .. 262203 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTAAAGGACAGCAATGTTTTCTTTCTTTGTCAAATGATAATTTTGTTTATCAATCTTTGAAAGAATGAAAATGCTTTTATGGCAATACTTGCGAGCCTGGTTCCATTTATGATGGTCGATCTTTTCTGTGCAGCAGTTTTGTTAATTTAGACTCTGAAGTTATGGAGGAGCAGTTTGTATTGAGGGTTCCACCGTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGATGATGCTTCGTTGGATTTGTCTTTCTCTGGTAGTAGAACTTATACAGTCATCTTTTGATTCATTCTGTACCTTCCGTGTTTTTTCCATTGCATCTGCGATGTATGGAAGAATTTTTAGATTTTCCGGATAGATTAGTTTCGTAGCCTCTTAAAAAAAAATAAAAGTAACTTCTGATACAAAGCCTTTTCTCTTTCTGTTATTTTTTTTACTCTGAACGTTCCCTTTTACTGATGATTGCCAATGTGTGCTTCTTAGGCCAAGTTTTGCACATAGTTGATCTCACTTCTGCCATGTGCTTGTCTGGCTAAGTTTAGTTATGGTGTATGGAAATCCAACACTTAAAATAGCCAAATCTTTGTTTCCTATTGTACTTAATGGAAAAGAAATTTGGCAGTAATATCAGGAGGTAGAGAGAGATTTGGAAATAGATCAAATTGTGCAGTATGGTTTTGTTCTAATTTGAGGCTTGGTTTAAATGCCTATAATATGGCCTCTTACATTGCATCCAGAGGACGGGAGAAGTGGAACTTTTGCCATTGGTGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTCGTGGAATCCTACAAAACATATGATGATACTGTGCTAATCAAAGCTGCAGACATTGGTCAGGTAAAATGATATTAAAATCATTGGCACATGGATTTCAAAAGAGCACTCCGTTTCTTATGTTTTATGAGTTGATGTTTTTTCAATAGATGATTATGGTTAGAGAACCGAGTGATCCTGCTCCAGATTCTACCGAGTATAGGCATGGTCTGACCCCTCCTATGAGGGATGCACGAAAGCGTAGATTTCGAAGAGAGCCAGATTTAAATGTATGGTGTTCTAATCCCTCTTACTAAAAGTTTCATGTAGGATTTTCTTATGAGTAAGTAAATTGCTGTACAACATCATAATAAATTGAGATTTCTACTAATGTAATGAGCAGGTAGTCCGGGATAAATTATTGAATGATGCAAGTACAATATAGTTACCTAGTTTGTGCTTTACATGTTTTTCTCATTTATAAACCTTTGATTAACATTGATCTCTTATTTTTTTGGGTCAATAGTGACATGCTAAGCTCCCTTTTCTTTTCCCCATCTTTTCAATAATAATCAGTCTACATTTGCATTTGTTCTTCATATCAAAATTTGTTGCATCTAGAATGGTGTCTTTTGATTCTAGTCTCAAGGTTGTTAAATCATGAAATGTAACACGCATCAAAATGGAATTTTAGTTTATTGTGTATTAATTTCTAAAAAAACAGAAGTCAGAAAACAAATGGATTCTAAACAGTCCCTAAATGATTCTGTTTTCTTTCTTTTTTGGCAGCCTGAGCTTGTACGGCGTGTGGAGAAAGATTTATTAAATATCATGGCAGGAGGAACTACTGAAAATGCCGATATCCTTCATACGTTATGGTTATGCTTTTCAGTTTCATTTGTGTTTTAAACTCATTAGCATATTAGTTGATGAAACAAATGTGTCATCCCCACCTCAAGCCACATCGTAAAGATTGTTTAAAGCCCAGTAAATATAATGGATTGAGAATTATTTTAATTGGTCCTCACATGAAATTCTTTGATTGAAAAATTGAAAAAACATACGGGAAACAGGAAATGACAATTGTTTTGTTGAGGGCGATTATTTTCTAACACAAAGGGCCTTTTTGCTTGTCATATTCTGACATATGTTATATGTTCTTATGCTGCAACGTAACTTTAGAAGTTCCTTGACTGAGCATTCTCACATGTTGGAGTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTGATCATACAAATGCAAAGCCTGCTTCCGCACCTGCACCTAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGTGAGCCTGAAAGGAGCGATTCTGATGACTCTGATCGTTCAATTGATTGAATATTATCATCATCTACTTCTAAATGTTTGTCTCCCTAATGATGGAGGTTGTATCAGCCTGTTTGTATATGAAAGGAAATGGTAACTGTTGTCTGTATCATCCCTTCTCTTGCATCTAGAAACAAAACACAGGATGATTTCTTTGGTGTATTTTAACATCTTTCATTTCTATAACAAGATAT

mRNA sequence

TCTTTTAAAGGACAGCAATGTTTTCTTTCTTTGTCAAATGATAATTTTGTTTATCAATCTTTGAAAGAATGAAAATGCTTTTATGGCAATACTTGCGAGCCTGGTTCCATTTATGATGGTCGATCTTTTCTGTGCAGCAGTTTTGTTAATTTAGACTCTGAAGTTATGGAGGAGCAGTTTGTATTGAGGGTTCCACCGTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGATGATGCTTCGTTGGATTTGTCTTTCTCTGAGGACGGGAGAAGTGGAACTTTTGCCATTGGTGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTCGTGGAATCCTACAAAACATATGATGATACTGTGCTAATCAAAGCTGCAGACATTGGTCAGATGATTATGGTTAGAGAACCGAGTGATCCTGCTCCAGATTCTACCGAGTATAGGCATGGTCTGACCCCTCCTATGAGGGATGCACGAAAGCGTAGATTTCGAAGAGAGCCAGATTTAAATCCTGAGCTTGTACGGCGTGTGGAGAAAGATTTATTAAATATCATGGCAGGAGGAACTACTGAAAATGCCGATGTTGGAGTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTGATCATACAAATGCAAAGCCTGCTTCCGCACCTGCACCTAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGTGAGCCTGAAAGGAGCGATTCTGATGACTCTGATCGTTCAATTGATTGAATATTATCATCATCTACTTCTAAATGTTTGTCTCCCTAATGATGGAGGTTGTATCAGCCTGTTTGTATATGAAAGGAAATGGTAACTGTTGTCTGTATCATCCCTTCTCTTGCATCTAGAAACAAAACACAGGATGATTTCTTTGGTGTATTTTAACATCTTTCATTTCTATAACAAGATAT

Coding sequence (CDS)

ATGGAGGAGCAGTTTGTATTGAGGGTTCCACCGTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGATGATGCTTCGTTGGATTTGTCTTTCTCTGAGGACGGGAGAAGTGGAACTTTTGCCATTGGTGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTCGTGGAATCCTACAAAACATATGATGATACTGTGCTAATCAAAGCTGCAGACATTGGTCAGATGATTATGGTTAGAGAACCGAGTGATCCTGCTCCAGATTCTACCGAGTATAGGCATGGTCTGACCCCTCCTATGAGGGATGCACGAAAGCGTAGATTTCGAAGAGAGCCAGATTTAAATCCTGAGCTTGTACGGCGTGTGGAGAAAGATTTATTAAATATCATGGCAGGAGGAACTACTGAAAATGCCGATGTTGGAGTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTGATCATACAAATGCAAAGCCTGCTTCCGCACCTGCACCTAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGTGAGCCTGAAAGGAGCGATTCTGATGACTCTGATCGTTCAATTGATTGA

Protein sequence

MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVMETETNVGEPERSDSDDSDRSID*

Homology

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BLAST of Cucsa.010900 vs. Swiss-Prot
Match: TAF7_ARATH (Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana GN=TAF7 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-63
Identity = 115/145 (79.31%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+SD+  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           P VVES+KTYDD  L+K ADIGQMIMVREP DPAP++ EYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTEN 146
           DLNPELV+RVE+DLLNI++GGT EN
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVEN 145

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BLAST of Cucsa.010900 vs. Swiss-Prot
Match: TAF7L_MOUSE (Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +EEQF+LR+PP  A  + ++++   ++  D  L + FS DG      + +   PA L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKD-KLKIDFSPDGHHAVVQVDNVSLPAKLVNL 165

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVR---EPSDPAPDST------------------- 120
           PCV+ S KT D     K AD+ QM++     EP  P  +                     
Sbjct: 166 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 225

Query: 121 -EYRHGLTPPMRDARKRRFRREPDLNPELVRRVEK 133
             ++HG+TPP+++ RK+RFR+     P+ V++V++
Sbjct: 226 YNWKHGITPPLKNVRKKRFRKTTKKLPD-VKQVDE 258

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BLAST of Cucsa.010900 vs. Swiss-Prot
Match: TAF7_CRIGR (Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-14
Identity = 54/163 (33.13%), Postives = 78/163 (47.85%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     +  D  L +    DGR G   +      A L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLAAKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIM----------VREPSDPA-PDSTE---------- 120
           PCV+ES KT D     K ADI QM++          V EP  PA P +++          
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 131

Query: 121 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVRRVEKD 134
            + HG+T P+++ RKRRFR+         PD+  E+ R +  D
Sbjct: 132 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTD 173

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BLAST of Cucsa.010900 vs. Swiss-Prot
Match: TAF7_DROME (Transcription initiation factor TFIID subunit 7 OS=Drosophila melanogaster GN=Taf7 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 52/189 (27.51%), Postives = 86/189 (45.50%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF++RVP  +A+ +   +N          L +    D R G   I D      L+DL
Sbjct: 55  LESQFIMRVPKELADTVHEAINAGTIKD---RLTIQLDPDLRYGEVRIDDQILYTKLVDL 114

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTE--------------------Y 120
           P VVESYKT D+    K+ADI Q+++ +E  +   D TE                    +
Sbjct: 115 PTVVESYKTIDNKSFYKSADICQILICKEERE---DETEKESPNKNKKKDPNKVDKKYLF 174

Query: 121 RHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIM-AGGTTENADVGVAEQQDDRDE 169
            HG+TPP ++ RKRRFR+           +EK++ +++         D  +  ++D   +
Sbjct: 175 PHGITPPCKNVRKRRFRKTLKKKNVEAPEIEKEVKHLLRIDNEAVRVDYEIINEEDKPMD 234

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BLAST of Cucsa.010900 vs. Swiss-Prot
Match: TAF7_PONAB (Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-13
Identity = 52/163 (31.90%), Postives = 76/163 (46.63%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     +  D  L +    DGR G   +      + L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIM----------VREP---SDPAPDSTE-------- 120
           PCV+ES KT D     K ADI QM++          V EP   +DP     +        
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 131

Query: 121 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVRRVEKD 134
            + HG+T P+++ RKRRFR+         PD+  E+ R +  D
Sbjct: 132 IWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTD 173

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BLAST of Cucsa.010900 vs. TrEMBL
Match: A0A0A0KSB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517200 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-109
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFS+DGRSGTFAIGDDHFPASLLDL
Sbjct: 96  MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 155

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP
Sbjct: 156 PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 215

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME
Sbjct: 216 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 275

Query: 181 TETNVGEPERSDSDDSDRSID 202
           TETNVGEPERSDSDDSDRSID
Sbjct: 276 TETNVGEPERSDSDDSDRSID 296

[Close]

BLAST of Cucsa.010900 vs. TrEMBL
Match: B9GLF9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04340g PE=4 SV=2)

HSP 1 Score: 308.9 bits (790), Expect = 4.5e-81
Identity = 150/200 (75.00%), Postives = 167/200 (83.50%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPS+AE+++RLL+E ASSS++ SLDLSFSEDGRSGTF IGD+HFPASLLDL
Sbjct: 1   MEEQFILRVPPSIAEKLDRLLSETASSSEEQSLDLSFSEDGRSGTFVIGDEHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PC VESYKTYDD  L+K +DIGQM+MVRE  D APD  EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCAVESYKTYDDCALVKTSDIGQMLMVREAGDTAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELV+RVEKDLLNIMAGGT ENAD    EQ+++ D+N    N KP  AP  KPDV E
Sbjct: 121 DLNPELVQRVEKDLLNIMAGGTVENADAEANEQEEEGDQNAHKANKKPEPAPEAKPDVPE 180

Query: 181 TETNVGEPERSDSDDSDRSI 201
           T  N  EPERSDSDDSD SI
Sbjct: 181 TTANAEEPERSDSDDSDDSI 200

[Close]

BLAST of Cucsa.010900 vs. TrEMBL
Match: A0A067L104_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01895 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.2e-79
Identity = 149/200 (74.50%), Postives = 167/200 (83.50%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSVAER++RLL+E+ASSS++ SLDLSFSEDGR+GTF IGDDHFPASL+DL
Sbjct: 1   MEEQFILRVPPSVAERLDRLLSESASSSEEQSLDLSFSEDGRNGTFVIGDDHFPASLMDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PCVVESYKTYDD  L+K  DIGQMIMVRE  D APD  EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDCALVKTTDIGQMIMVRETGDTAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELV+RVEKDL+NI   GT ENADV   EQ++D D+N  + + KP   PA KPDV E
Sbjct: 121 DLNPELVQRVEKDLVNI-TRGTVENADVEANEQEEDGDQNARNASKKPLPVPAAKPDVQE 180

Query: 181 TETNVGEPERSDSDDSDRSI 201
           T  N  EPERSDSDDSD S+
Sbjct: 181 TAANAEEPERSDSDDSDDSM 199

[Close]

BLAST of Cucsa.010900 vs. TrEMBL
Match: A0A151RD52_CAJCA (Transcription initiation factor TFIID subunit 7 OS=Cajanus cajan GN=KK1_038113 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.1e-78
Identity = 152/201 (75.62%), Postives = 166/201 (82.59%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNE-NASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLD 60
           MEEQF+LRVPP+VAERIERLLNE N SSS+D SLDLSFSEDGRSGTF IG++HFPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNESNPSSSEDKSLDLSFSEDGRSGTFVIGNEHFPASLLD 60

Query: 61  LPCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDD  LIK AD+GQMIMVRE  D APD  EYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKTADVGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVM 180
           PDLNPELV RVEKDLL IMA GT +N D+  AEQ++  DEN   TN KPA  PAPK D  
Sbjct: 121 PDLNPELVSRVEKDLLKIMARGTADNLDIQAAEQEEG-DENARGTNKKPAPKPAPKHDAP 180

Query: 181 ETETNVGEPERSDSDDSDRSI 201
           E   N GEP+RSDS++SD S+
Sbjct: 181 ENLANAGEPDRSDSEESDDSV 200

[Close]

BLAST of Cucsa.010900 vs. TrEMBL
Match: V7CT24_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G056600g PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 153/201 (76.12%), Postives = 168/201 (83.58%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNE-NASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLD 60
           M+EQF+LRVPP+VAERIERLLNE + SSS+D SLDLSF+EDGRSGTF IG++HFPASLLD
Sbjct: 1   MDEQFILRVPPNVAERIERLLNETDPSSSEDKSLDLSFNEDGRSGTFMIGNEHFPASLLD 60

Query: 61  LPCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRRE 120
           LPCVVESYKTYDD  LIKAADIGQMIMVRE  D APD  EYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPCVVESYKTYDDNSLIKAADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVM 180
           PDLNPELV RVEKDLL IMAGGT EN D   AEQ  + +EN   +N KPA  PAPK DV 
Sbjct: 121 PDLNPELVSRVEKDLLKIMAGGTAENLDAEAAEQ--EVEENARGSNKKPAPKPAPKHDVP 180

Query: 181 ETETNVGEPERSDSDDSDRSI 201
           E  TN GEP+RSDS++SD S+
Sbjct: 181 ENLTNAGEPDRSDSEESDDSV 199

[Close]

BLAST of Cucsa.010900 vs. TAIR10
Match: AT1G55300.2 (AT1G55300.2 TBP-associated factor 7)

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 115/145 (79.31%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+SD+  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           P VVES+KTYDD  L+K ADIGQMIMVREP DPAP++ EYRHGLTPPM+DARKRRFRREP
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTEN 146
           DLNPELV+RVE+DLLNI++GGT EN
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVEN 145

[Close]

BLAST of Cucsa.010900 vs. NCBI nr
Match: gi|449450024|ref|XP_004142764.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 1.9e-109
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFS+DGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180

Query: 181 TETNVGEPERSDSDDSDRSID 202
           TETNVGEPERSDSDDSDRSID
Sbjct: 181 TETNVGEPERSDSDDSDRSID 201

[Close]

BLAST of Cucsa.010900 vs. NCBI nr
Match: gi|700196145|gb|KGN51322.1| (hypothetical protein Csa_5G517200 [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 1.9e-109
Identity = 200/201 (99.50%), Postives = 201/201 (100.00%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFS+DGRSGTFAIGDDHFPASLLDL
Sbjct: 96  MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 155

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP
Sbjct: 156 PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 215

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME
Sbjct: 216 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 275

Query: 181 TETNVGEPERSDSDDSDRSID 202
           TETNVGEPERSDSDDSDRSID
Sbjct: 276 TETNVGEPERSDSDDSDRSID 296

[Close]

BLAST of Cucsa.010900 vs. NCBI nr
Match: gi|659117947|ref|XP_008458871.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis melo])

HSP 1 Score: 397.1 bits (1019), Expect = 1.8e-107
Identity = 197/201 (98.01%), Postives = 198/201 (98.51%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSS+DASLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PCVVESYKTYDDTVLIKAADIGQMIMVREP DPAPDSTEYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENP HTNAKPASAPAPKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPHHTNAKPASAPAPKPDVME 180

Query: 181 TETNVGEPERSDSDDSDRSID 202
           TETNVGEPERSDSDDSD SID
Sbjct: 181 TETNVGEPERSDSDDSDHSID 201

[Close]

BLAST of Cucsa.010900 vs. NCBI nr
Match: gi|731393192|ref|XP_010651371.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera])

HSP 1 Score: 322.0 bits (824), Expect = 7.4e-85
Identity = 158/200 (79.00%), Postives = 175/200 (87.50%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPS+AERIERLLNEN+SSS+D SLDLSFSEDGRSGTF IG+DHFPASLLDL
Sbjct: 10  MEEQFILRVPPSIAERIERLLNENSSSSEDKSLDLSFSEDGRSGTFVIGNDHFPASLLDL 69

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           PCV+ESYKTYDD+VLIK ADIGQMIMVRE  D APD  EYRHGLTPPMRDARKRRFRREP
Sbjct: 70  PCVLESYKTYDDSVLIKTADIGQMIMVREEGDTAPDVVEYRHGLTPPMRDARKRRFRREP 129

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELVRRVE+DLLNIMAGGT EN DV VAEQ++D DE+  + + K A AP PKPDV E
Sbjct: 130 DLNPELVRRVERDLLNIMAGGTAENVDVEVAEQEEDGDEHARNASKKSAPAPIPKPDVPE 189

Query: 181 TETNVGEPERSDSDDSDRSI 201
              N GEP+RS+SD+SD S+
Sbjct: 190 AGANAGEPDRSESDESDDSM 209

[Close]

BLAST of Cucsa.010900 vs. NCBI nr
Match: gi|702278735|ref|XP_010044946.1| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 7 [Eucalyptus grandis])

HSP 1 Score: 315.5 bits (807), Expect = 6.9e-83
Identity = 158/199 (79.40%), Postives = 169/199 (84.92%), Query Frame = 1


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSVAERIERLLNE+ASSSDD  LDLSFSEDGR+GTF IG+D F ASL+DL
Sbjct: 1   MEEQFILRVPPSVAERIERLLNEDASSSDDKELDLSFSEDGRTGTFVIGNDRFTASLMDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120
           P VVESYKTYDDT +I  ADIGQMIMVREP DPAPD  EYRHGLTPPMRDARKRRFRREP
Sbjct: 61  PTVVESYKTYDDTNIIXTADIGQMIMVREPGDPAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180
           DLNPELV+RVEKDLLNIMAGGT ENADV +AEQ++D DEN      K A  PA KP V E
Sbjct: 121 DLNPELVQRVEKDLLNIMAGGTAENADVDMAEQEEDGDENSRKPGKKTAPKPAAKPKVPE 180

Query: 181 TETNVGEPERSDSDDSDRS 200
            ETN GEPERSDSD+SD S
Sbjct: 181 AETNAGEPERSDSDESDES 199

The following BLAST results are available for this feature:

BLAST of Cucsa.010900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF7_ARATH	4.7e-63	79.31	Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana GN=TAF7 ...	[more]
TAF7L_MOUSE	3.6e-15	30.32	Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE...	[more]
TAF7_CRIGR	3.1e-14	33.13	Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE...	[more]
TAF7_DROME	1.2e-13	27.51	Transcription initiation factor TFIID subunit 7 OS=Drosophila melanogaster GN=Ta...	[more]
TAF7_PONAB	2.0e-13	31.90	Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=...	[more]

BLAST of Cucsa.010900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSB3_CUCSA	1.3e-109	99.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517200 PE=4 SV=1	[more]
B9GLF9_POPTR	4.5e-81	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04340g PE=4 SV=2	[more]
A0A067L104_JATCU	7.2e-79	74.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01895 PE=4 SV=1	[more]
A0A151RD52_CAJCA	6.1e-78	75.62	Transcription initiation factor TFIID subunit 7 OS=Cajanus cajan GN=KK1_038113 P...	[more]
V7CT24_PHAVU	1.4e-77	76.12	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G056600g PE=4 SV=1	[more]

BLAST of Cucsa.010900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55300.2	2.6e-64	79.31	TBP-associated factor 7	[more]

BLAST of Cucsa.010900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450024\|ref\|XP_004142764.1\|	1.9e-109	99.50	PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis sativus]	[more]
gi\|700196145\|gb\|KGN51322.1\|	1.9e-109	99.50	hypothetical protein Csa_5G517200 [Cucumis sativus]	[more]
gi\|659117947\|ref\|XP_008458871.1\|	1.8e-107	98.01	PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis melo]	[more]
gi\|731393192\|ref\|XP_010651371.1\|	7.4e-85	79.00	PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]	[more]
gi\|702278735\|ref\|XP_010044946.1\|	6.9e-83	79.40	PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 7 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006751	TAFII55_prot_cons_reg

Vocabulary: **Cellular Component**
Term	Definition
GO:0005669	transcription factor TFIID complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006367	transcription initiation from RNA polymerase II promoter

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.010900.1	Cucsa.010900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006751	TAFII55 protein, conserved region	PFAM	PF04658	TAFII55_N	coord: 1..136 score: 3.1
IPR006751	TAFII55 protein, conserved region	SMART	SM01370	TAFII55_N_2	coord: 1..145 score: 1.1
None	No IPR available	PANTHER	PTHR12228	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	coord: 1..201 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.010900	Cla004655	Watermelon (97103) v1	cgywmB359
Cucsa.010900	Csa5G517200	Cucumber (Chinese Long) v2	cgycuB286
Cucsa.010900	MELO3C021620	Melon (DHL92) v3.5.1	cgymeB336
Cucsa.010900	ClCG09G019650	Watermelon (Charleston Gray)	cgywcgB338
Cucsa.010900	CSPI05G17830	Wild cucumber (PI 183967)	cgycpiB296
Cucsa.010900	CmaCh04G026550	Cucurbita maxima (Rimu)	cgycmaB0543
Cucsa.010900	CmoCh04G027780	Cucurbita moschata (Rifu)	cgycmoB0544
Cucsa.010900	Lsi02G016250	Bottle gourd (USVL1VR-Ls)	cgylsiB318
Cucsa.010900	Cp4.1LG01g23740	Cucurbita pepo (Zucchini)	cgycpeB0522
Cucsa.010900	MELO3C021620.2	Melon (DHL92) v3.6.1	cgymedB331
Cucsa.010900	CsaV3_5G026740	Cucumber (Chinese Long) v3	cgycucB300
Cucsa.010900	Cla97C09G181110	Watermelon (97103) v2	cgywmbB348
Cucsa.010900	Bhi06G000522	Wax gourd	cgywgoB388
Cucsa.010900	Carg04493	Silver-seed gourd	carcgyB0766

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.010900	Watermelon (97103) v2	cgywmbB347
Cucsa.010900	Cucumber (Gy14) v1	cgycgyB017
Cucsa.010900	Cucurbita maxima (Rimu)	cgycmaB0542
Cucsa.010900	Cucurbita moschata (Rifu)	cgycmoB0543
Cucsa.010900	Cucurbita pepo (Zucchini)	cgycpeB0519
Cucsa.010900	Silver-seed gourd	carcgyB0315