Cp4.1LG01g23740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g23740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription initiation factor TFIID subunit 7
LocationCp4.1LG01 : 19448008 .. 19450399 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGATGGAATTTTCTGGATTTTCAGTATCTCTCGACTCTTTCCCCCCGCGCTATCGGTACCCCTCGATTTCTCTCTTTCACAGCTATCCCCTCGATTTCTCCCTCGCCGGCGGCGGCAACCGTCAATTGTGGGGGACGGCTTTTGTATCCTTGATTTTGTACAAGGGCTGTTAAAAGCTCATAGCACAGGATACAAAAAACCTGACACCAACGCACCCTTCAAGAATACAAGGTAATCCAAGATTATGTTTTCAAATTGAATCAACCAGATGAATTGAACCAATTTTCGTTTGGAAGCCCATTTCTTTCCAGATTTGATTACCCAAAAGGCACTATTTCTAGAACCCTATTTCTTTTTCATTGCCGAATGATGATTTTGTTTATCAACCTTACAAAGAATAAAAATGGTTTTCGTTTACGATGGTTGATCTTCTTTGTGCAGCAGTTTTATTGATTTTGACTCTGAATTCATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGGTAAAACAAACTTATGCACTCATCTTCTGGTTCAATCTCCCTGTTCTATGCTTTTTTCATTGCATTTGCTGTGATGTTGGATGAATAGATTAACTTCTAGACTTTTGGACTGATTAGCATTGGAAATAGATCAAACTGTGCAGTATGGTTTTATCTTAATTTTGAGGGTTGGCCTAATTGCCTATTTATGGCCTCCTAAATTGTCACACAGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGGTAAAATTGTATCAAAATCGTTAGTCTATACATTTCAGGTGATATGATCTGGCTGTTTCTTAGATTTTATGGGATGCTATCATTTTAACAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCGGATTTAAATGTATGCCATTCTTATCCGTCTTACTATTAGCTTGATAGTAAACTGGTGTACGACATGATAATCCATTTAGATTCCTACTTGTACAAGGAGTAGGTAGTTGAGGACAAATTATTGGATGAATATAGTTTATGCTTGGCGTGTATGTCTCTCTCATATATAAATTCTAAATTAACAATGATCTCTTAAATCTGTAGGGCAATAGTGATATCTTAAGCGTTTTCATTATACGTGACATATCTTCTCAACAAGAGAATCAGTTCTTTATTTTCTTTTGTTCTCATATCAAAATTTGTTGCATTTAGAAAGTGCCTTTTGATTGTTACATACTGATTCTTTCTCTCTTCTTTTTGGCAGCCTGAGCTTGTACGACGGGTGGAGAAAGATCTACTAAACATCATGGCAGGAGGAACTACCGAAAATGCAGATATCCTTGATAATTTATGTGTTTGAAACTCGTTACCATATTAGTTTATGAAACATGTACCCATCCTGTTACCGTCCAAGTCTATCACTAGCAGATATTGTCTTTTTTGGTCTTCCCTTCAAGATTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACCTCCTTATAAAGAATGTTTTGTTCTCCTCCTCAACCGATGTGAGATCTCTCAATCCAACCCCTTTGGGGTCCAGCGTCCTTGCTGGCATATCGTCTCGTGTCCACCACCCTTCAGGGCTCAGCCTCCTCACTGACACATCGCCCGGTGTTTGTCTCTGATACCATTTGTAACAGCCCAAGTCCACCATTAACAAATATTGTTTTCTTTGGATTTTCTCTCACGGTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGATTGTTTCATTCTCCTCCCCAACCGATGTGGGATCCCACGCATCCCCGCTTGATAAACATTGTTTACATCTCAAAACTGTGGCGGACTGAGACTTATTTTAATTAGCACTCATGAAATTCTTGATTGAAGGGAACTGACAATATGCCTTTTTGCTCCTCTTCTTCTGACATAAAGTTATGATCTTATGCTACAATAATTTTAACTTTAGAGGTTCCTTAACTGAGCATTCTCACATGTTGGAGTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGAT

mRNA sequence

TAAGATGGAATTTTCTGGATTTTCAGTATCTCTCGACTCTTTCCCCCCGCGCTATCGGTACCCCTCGATTTCTCTCTTTCACAGCTATCCCCTCGATTTCTCCCTCGCCGGCGGCGGCAACCGTCAATTGTGGGGGACGGCTTTTGTATCCTTGATTTTGTACAAGGGCTGTTAAAAGCTCATAGCACAGGATACAAAAAACCTGACACCAACGCACCCTTCAAGAATACAAGCAGTTTTATTGATTTTGACTCTGAATTCATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGAT

Coding sequence (CDS)

ATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGAT

Protein sequence

MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKLAEHQDDRHENSHHASAKPASTPAAKPDVMETETTVGEPERSDSDDSDHSID
Homology
[Close]
BLAST of Cp4.1LG01g23740 vs. Swiss-Prot
Match: TAF7_ARATH (Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana GN=TAF7 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.0e-45
Identity = 87/113 (76.99%), Postives = 102/113 (90.27%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+S++  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK 114
           P VVES+KTYDD  L+K ADI QMIMVREPGDPAP++ EYRHGLTPPM+DARK
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARK 113

[Close]
BLAST of Cp4.1LG01g23740 vs. Swiss-Prot
Match: TAF7L_MOUSE (Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-13
Identity = 41/136 (30.15%), Postives = 69/136 (50.74%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +EEQF+LR+PP  A  + ++++   ++ +D  L + FS DG      + +   PA L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKD-KLKIDFSPDGHHAVVQVDNVSLPAKLVNL 165

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTE--------------------- 114
           PCV+ S KT D     K AD++QM++    G+P     E                     
Sbjct: 166 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 225

[Close]
BLAST of Cp4.1LG01g23740 vs. Swiss-Prot
Match: TAF7_CRIGR (Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     + +D  L +    DGR G   +      A L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKD-RLTIELHPDGRHGIVRVDRVPLAAKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIM----------VREPGDPA-PDSTE---------- 114
           PCV+ES KT D     K ADI QM++          V EP  PA P +++          
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 131

[Close]
BLAST of Cp4.1LG01g23740 vs. Swiss-Prot
Match: TAF7_HUMAN (Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     + +D  L +    DGR G   +      + L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKD-RLTIELHPDGRHGIVRVDRVPLASKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTE--------------------- 114
           PCV+ES KT D     K ADI QM++    GD  P   E                     
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 131

[Close]
BLAST of Cp4.1LG01g23740 vs. Swiss-Prot
Match: TAF7_PONAB (Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     + +D  L +    DGR G   +      + L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKD-RLTIELHPDGRHGIVRVDRVPLASKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTE--------------------- 114
           PCV+ES KT D     K ADI QM++    GD  P   E                     
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 131

[Close]
BLAST of Cp4.1LG01g23740 vs. TrEMBL
Match: A0A0A0KSB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517200 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 6.7e-67
Identity = 146/201 (72.64%), Postives = 150/201 (74.63%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSS+D SLDLSFS+DGRSGTFAIGDDHFPASLLDL
Sbjct: 96  MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 155

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMR----------- 120
           PCVVESYKTYDDTVLIKAADI QMIMVREP DPAPDSTEYRHGLTPPMR           
Sbjct: 156 PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 215

Query: 121 DARK-------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 166
           D                            +AE QDDR EN  H +AKPAS PA KPDVME
Sbjct: 216 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 275

[Close]
BLAST of Cp4.1LG01g23740 vs. TrEMBL
Match: A0A067L104_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01895 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 9.4e-53
Identity = 119/199 (59.80%), Postives = 135/199 (67.84%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSVAER++RLL+E+ASSSE+ SLDLSFSEDGR+GTF IGDDHFPASL+DL
Sbjct: 1   MEEQFILRVPPSVAERLDRLLSESASSSEEQSLDLSFSEDGRNGTFVIGDDHFPASLMDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRD---------- 120
           PCVVESYKTYDD  L+K  DI QMIMVRE GD APD  EYRHGLTPPMRD          
Sbjct: 61  PCVVESYKTYDDCALVKTTDIGQMIMVRETGDTAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 121 ----------ARKLA---------------EHQDDRHENSHHASAKPASTPAAKPDVMET 165
                      + L                E ++D  +N+ +AS KP   PAAKPDV ET
Sbjct: 121 DLNPELVQRVEKDLVNITRGTVENADVEANEQEEDGDQNARNASKKPLPVPAAKPDVQET 180

[Close]
BLAST of Cp4.1LG01g23740 vs. TrEMBL
Match: G7JA67_MEDTR (Transcription initiation factor TFIID subunit-like protein OS=Medicago truncatula GN=MTR_3g083880 PE=4 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 6.1e-52
Identity = 121/200 (60.50%), Postives = 136/200 (68.00%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNEN-ASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLD 60
           MEEQF+LRVPP+VAERIERLLNEN ASSSED SLDL FS+DGRSGTF IGD+HFPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLQFSDDGRSGTFVIGDEHFPASLLD 60

Query: 61  LPCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------ 120
           LP VVESYKTYDD  L+K ADI QMIMVRE GD APD  EYRHGLTPPMRDARK      
Sbjct: 61  LPAVVESYKTYDDNSLVKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        L+  + +  EN+  A+ KPA+T A+K DV E
Sbjct: 121 PDLNPELVSRVEKDLLKIIAGGTAENIDILSSSEQEGGENARGANKKPAATSASKNDVPE 180

[Close]
BLAST of Cp4.1LG01g23740 vs. TrEMBL
Match: V7CV70_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G056500g PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.2e-51
Identity = 122/199 (61.31%), Postives = 137/199 (68.84%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNE-NASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLD 60
           M+EQF+LRVPP+VAERIERLLNE + SSSED SLDLSF+EDGRSGTF IG++HFPASLLD
Sbjct: 1   MDEQFILRVPPNVAERIERLLNETDPSSSEDKSLDLSFNEDGRSGTFMIGNEHFPASLLD 60

Query: 61  LPCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------ 120
           LPCVVESYKTYDD  LIKAADI QMIMVRE GD APD  EYRHGLTPPMRDARK      
Sbjct: 61  LPCVVESYKTYDDNSLIKAADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 ----------------------LAEHQD------DRHENSHHASAKPASTPAAKPDVMET 165
                                  AE+ D      +  EN+  A+ KPA  PA K DV E 
Sbjct: 121 PDLNPELVSRVEKDLLKIMAGGTAENHDAEAAEQEVEENARGANRKPAPKPAPKHDVPEN 180

[Close]
BLAST of Cp4.1LG01g23740 vs. TrEMBL
Match: B9GLF9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04340g PE=4 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 115/201 (57.21%), Postives = 133/201 (66.17%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPS+AE+++RLL+E ASSSE+ SLDLSFSEDGRSGTF IGD+HFPASLLDL
Sbjct: 1   MEEQFILRVPPSIAEKLDRLLSETASSSEEQSLDLSFSEDGRSGTFVIGDEHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMR----------- 120
           PC VESYKTYDD  L+K +DI QM+MVRE GD APD  EYRHGLTPPMR           
Sbjct: 61  PCAVESYKTYDDCALVKTSDIGQMLMVREAGDTAPDVVEYRHGLTPPMRDARKRRFRREP 120

Query: 121 --------------------------DARKLAEHQDDRHENSHHASAKPASTPAAKPDVM 165
                                     DA +  E +++  +N+H A+ KP   P AKPDV 
Sbjct: 121 DLNPELVQRVEKDLLNIMAGGTVENADA-EANEQEEEGDQNAHKANKKPEPAPEAKPDVP 180

[Close]
BLAST of Cp4.1LG01g23740 vs. TAIR10
Match: AT1G55300.2 (AT1G55300.2 TBP-associated factor 7)

HSP 1 Score: 181.4 bits (459), Expect = 4.5e-46
Identity = 87/113 (76.99%), Postives = 102/113 (90.27%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+S++  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK 114
           P VVES+KTYDD  L+K ADI QMIMVREPGDPAP++ EYRHGLTPPM+DARK
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARK 113

[Close]
BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: gi|659117947|ref|XP_008458871.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 4.2e-70
Identity = 151/201 (75.12%), Postives = 153/201 (76.12%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSED SLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMR----------- 120
           PCVVESYKTYDDTVLIKAADI QMIMVREPGDPAPDSTEYRHGLTPPMR           
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DARK-------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 166
           D                            +AE QDDR EN HH +AKPAS PA KPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPHHTNAKPASAPAPKPDVME 180

[Close]
BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: gi|449450024|ref|XP_004142764.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 9.7e-67
Identity = 146/201 (72.64%), Postives = 150/201 (74.63%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSS+D SLDLSFS+DGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMR----------- 120
           PCVVESYKTYDDTVLIKAADI QMIMVREP DPAPDSTEYRHGLTPPMR           
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 DARK-------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 166
           D                            +AE QDDR EN  H +AKPAS PA KPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 180

[Close]
BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: gi|700196145|gb|KGN51322.1| (hypothetical protein Csa_5G517200 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 9.7e-67
Identity = 146/201 (72.64%), Postives = 150/201 (74.63%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSS+D SLDLSFS+DGRSGTFAIGDDHFPASLLDL
Sbjct: 96  MEEQFVLRVPPSVAERIERLLNENASSSDDASLDLSFSDDGRSGTFAIGDDHFPASLLDL 155

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMR----------- 120
           PCVVESYKTYDDTVLIKAADI QMIMVREP DPAPDSTEYRHGLTPPMR           
Sbjct: 156 PCVVESYKTYDDTVLIKAADIGQMIMVREPSDPAPDSTEYRHGLTPPMRDARKRRFRREP 215

Query: 121 DARK-------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 166
           D                            +AE QDDR EN  H +AKPAS PA KPDVME
Sbjct: 216 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEQQDDRDENPDHTNAKPASAPAPKPDVME 275

[Close]
BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: gi|720005279|ref|XP_010257606.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Nelumbo nucifera])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 126/196 (64.29%), Postives = 139/196 (70.92%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+ENASSSED SLDLSFSEDGR+GTF IG+DHFPA+LLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSENASSSEDKSLDLSFSEDGRNGTFVIGNDHFPAALLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PC+VESYKTYDD VLIK ADI Q+IMVRE GDPAPD  EYRHGLTPPMRDAR+       
Sbjct: 61  PCIVESYKTYDDNVLIKTADIGQIIMVREEGDPAPDGVEYRHGLTPPMRDARRRRFRREP 120

Query: 121 ---------------------LAEHQD----DRHENSHHASAKPASTPAAKPDVMETETT 165
                                 AE+ D    D  EN+  A  K A  PA KPDV ET T 
Sbjct: 121 DLNPELVQRVEKDLVNIMAGGTAENVDVEVEDGDENAPKAPEKAAPEPATKPDVPETGTA 180

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BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: gi|731393192|ref|XP_010651371.1| (PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 123/200 (61.50%), Postives = 139/200 (69.50%), Query Frame = 1 

Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPS+AERIERLLNEN+SSSED SLDLSFSEDGRSGTF IG+DHFPASLLDL
Sbjct: 10  MEEQFILRVPPSIAERIERLLNENSSSSEDKSLDLSFSEDGRSGTFVIGNDHFPASLLDL 69

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCV+ESYKTYDD+VLIK ADI QMIMVRE GD APD  EYRHGLTPPMRDARK       
Sbjct: 70  PCVLESYKTYDDSVLIKTADIGQMIMVREEGDTAPDVVEYRHGLTPPMRDARKRRFRREP 129

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AE ++D  E++ +AS K A  P  KPDV E
Sbjct: 130 DLNPELVRRVERDLLNIMAGGTAENVDVEVAEQEEDGDEHARNASKKSAPAPIPKPDVPE 189

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g23740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF7_ARATH8.0e-4576.99Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana GN=TAF7 ... [more]
TAF7L_MOUSE6.2e-1330.15Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE... [more]
TAF7_CRIGR1.3e-1033.33Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE... [more]
TAF7_HUMAN2.9e-1031.11Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=... [more]
TAF7_PONAB2.9e-1031.11Transcription initiation factor TFIID subunit 7 OS=Pongo abelii GN=TAF7 PE=2 SV=... [more]
BLAST of Cp4.1LG01g23740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSB3_CUCSA6.7e-6772.64Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517200 PE=4 SV=1[more]
A0A067L104_JATCU9.4e-5359.80Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01895 PE=4 SV=1[more]
G7JA67_MEDTR6.1e-5260.50Transcription initiation factor TFIID subunit-like protein OS=Medicago truncatul... [more]
V7CV70_PHAVU5.2e-5161.31Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G056500g PE=4 SV=1[more]
B9GLF9_POPTR1.2e-5057.21Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04340g PE=4 SV=2[more]
BLAST of Cp4.1LG01g23740 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G55300.24.5e-4676.99 TBP-associated factor 7[more]
BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117947|ref|XP_008458871.1|4.2e-7075.12PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis melo][more]
gi|449450024|ref|XP_004142764.1|9.7e-6772.64PREDICTED: transcription initiation factor TFIID subunit 7 [Cucumis sativus][more]
gi|700196145|gb|KGN51322.1|9.7e-6772.64hypothetical protein Csa_5G517200 [Cucumis sativus][more]
gi|720005279|ref|XP_010257606.1|2.2e-5564.29PREDICTED: transcription initiation factor TFIID subunit 7 [Nelumbo nucifera][more]
gi|731393192|ref|XP_010651371.1|3.8e-5561.50PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g23740.1Cp4.1LG01g23740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006751TAFII55 protein, conserved regionPFAMPF04658TAFII55_Ncoord: 1..113
score: 1.9
IPR006751TAFII55 protein, conserved regionSMARTSM01370TAFII55_N_2coord: 1..160
score: 5.8
NoneNo IPR availablePANTHERPTHR12228TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATEDcoord: 1..113
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g23740Cucsa.010900Cucumber (Gy14) v1cgycpeB0522
Cp4.1LG01g23740Cla004655Watermelon (97103) v1cpewmB381
Cp4.1LG01g23740Csa5G517200Cucumber (Chinese Long) v2cpecuB417
Cp4.1LG01g23740MELO3C021620Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g23740ClCG09G019650Watermelon (Charleston Gray)cpewcgB344
Cp4.1LG01g23740CSPI05G17830Wild cucumber (PI 183967)cpecpiB416
Cp4.1LG01g23740MELO3C021620.2Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g23740CsaV3_5G026740Cucumber (Chinese Long) v3cpecucB0519
Cp4.1LG01g23740Bhi06G000522Wax gourdcpewgoB0502
Cp4.1LG01g23740CsGy5G017500Cucumber (Gy14) v2cgybcpeB627
Cp4.1LG01g23740Carg04493Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g23740Silver-seed gourdcarcpeB0374
Cp4.1LG01g23740Cucumber (Chinese Long) v3cpecucB0502
Cp4.1LG01g23740Wax gourdcpewgoB0541
Cp4.1LG01g23740Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g23740Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g23740Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g23740Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g23740Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g23740Bottle gourd (USVL1VR-Ls)cpelsiB336