Cucsa.010790 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.010790
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Growth hormone receptor
Location	scaffold00154 : 187606 .. 188578 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAGTTGAGTGGCGGTCAGATTGAAGTTTGGAGTCTTCCTAAAGGGAAATTGAAATCTTGGTGTTCGTGGGTGTTCAGCTCAATCATGACTCAAAAATTCGGCGGTGGGTTGCGTCCTACGGGAACTCCCTCAGTTGGTTGGTCTTTTGTCGTCGTCATCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACAACATCTTCAAACCAAATCTTGTACTCTCCCTCTCTATTTCTCTCTATCTGCTTTGTGCATATATACCTAGACTGACCCTTTGATCATTATTCATTGTCGGAAATATAGCCATGTATTTGTAGAGTACTGGGTGCAATTCAACTTAAAACAGTGCCTGTAACCTGTTCGACAAAATGCGCATCTTGCTATTTTGTACCAATTGTTTTATTTCTTCACTATTAGCCTGTTTTTTTTATCAATAGGATTCAGATTTCAGAAATATTATCTTGCTATGTTCCCTTTTAAGTTAGATATCAATTTCAGCTTCTTCAGAAGTATGGTCATTCCTTATTTGTGCTGGGTGTCGTTTCACTTGGCAATGCCTGTAACATGTTCGATGAAAGGTCCACCTTGTAGATTATGCCAAGTGCCTCATGATTTGAGTATAAGCCTGTCATTTACTGTTTTTGATTAGTGCATTTCAGAATTACCTTGTTATGTTCTGGAAATCAGATATCAATCTCTACTTATATTCTTCTTCCAGAAAATCTAAGGACCATCCATCCATATTCTATTTCTTGACTTTCTTTTATTAGCTTTTCATAAAATGTCCATAATTTTGTTGTGTTGATAGATGTTTGCAGTGGAATTGCTTCCTCCATTTCTCTAGTTTCACTAAAGAGTGCTATATGCAAAGTGGTCTCTGAATTTCTAACTTTGTCCTTTCTAATTTCTTTGTAGACCTTGCCTCCGGCGGATAGTGCCCAGACGACGACCAACAAGGAAAACCCTATTTAA

mRNA sequence

GAGGAGTTGAGTGGCGGTCAGATTGAAGTTTGGAGTCTTCCTAAAGGGAAATTGAAATCTTGGTGTTCGTGGGTGTTCAGCTCAATCATGACTCAAAAATTCGGCGGTGGGTTGCGTCCTACGGGAACTCCCTCAGTTGGTTGGTCTTTTGTCGTCGTCATCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACAACATCTTCAAACCAAATCTTACCTTGCCTCCGGCGGATAGTGCCCAGACGACGACCAACAAGGAAAACCCTATTTAA

Coding sequence (CDS)

GAGGAGTTGAGTGGCGGTCAGATTGAAGTTTGGAGTCTTCCTAAAGGGAAATTGAAATCTTGGTGTTCGTGGGTGTTCAGCTCAATCATGACTCAAAAATTCGGCGGTGGGTTGCGTCCTACGGGAACTCCCTCAGTTGGTTGGTCTTTTGTCGTCGTCATCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACAACATCTTCAAACCAAATCTTACCTTGCCTCCGGCGGATAGTGCCCAGACGACGACCAACAAGGAAAACCCTATTTAA

Protein sequence

EELSGGQIEVWSLPKGKLKSWCSWVFSSIMTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENPI*

Homology

[Close]

BLAST of Cucsa.010790 vs. TrEMBL
Match: A0A0A0KQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 89
          MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 60

Query: 90 I 91
          I
Sbjct: 61 I 61

[Close]

BLAST of Cucsa.010790 vs. TrEMBL
Match: V7B431_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G011200g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.4e-15
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNK 87
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNI+KPNLTLPPAD    T  K
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPADGVNRTKQK 57

[Close]

BLAST of Cucsa.010790 vs. TrEMBL
Match: K7MVD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-15
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNI+KPNLTLPP D   +T  K +
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHD 78

[Close]

BLAST of Cucsa.010790 vs. TrEMBL
Match: I1N569_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.6e-15
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNI+KPNLTLPP D   +T  K +
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHD 59

[Close]

BLAST of Cucsa.010790 vs. TrEMBL
Match: A0A0B2QRR8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048673 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-14
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNIFKPNLTLPP D   +   K +
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIFKPNLTLPPVDGVDSNKQKHD 59

[Close]

BLAST of Cucsa.010790 vs. TAIR10
Match: AT4G26055.1 (AT4G26055.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M  KFGG  +PTGTPS+ WS VVV++SLLAGAS+VHNI+KP+LTLP  ++ +    +E+
Sbjct: 1  MNNKFGGK-KPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDLTLPQIENDEGDEKEES 58

[Close]

BLAST of Cucsa.010790 vs. TAIR10
Match: AT5G57080.1 (AT5G57080.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1


Query: 37 GLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          G  PTGTPS+  S +VV++SLLAGAS+VHNI+KP+L+LPP +S++     ++
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDLSLPPLESSEVAKKDDS 58

[Close]

BLAST of Cucsa.010790 vs. NCBI nr
Match: gi|700196132|gb|KGN51309.1| (hypothetical protein Csa_5G517080 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 89
          MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 60

Query: 90 I 91
          I
Sbjct: 61 I 61

[Close]

BLAST of Cucsa.010790 vs. NCBI nr
Match: gi|593331582|ref|XP_007139217.1| (hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNK 87
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNI+KPNLTLPPAD    T  K
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPADGVNRTKQK 57

[Close]

BLAST of Cucsa.010790 vs. NCBI nr
Match: gi|947052126|gb|KRH01655.1| (hypothetical protein GLYMA_18G290700 [Glycine max])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNI+KPNLTLPP D   +T  K +
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHD 59

[Close]

BLAST of Cucsa.010790 vs. NCBI nr
Match: gi|955386063|ref|XP_014626719.1| (PREDICTED: uncharacterized protein LOC106797182 [Glycine max])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNI+KPNLTLPP D   +T  K +
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQKHD 78

[Close]

BLAST of Cucsa.010790 vs. NCBI nr
Match: gi|734384596|gb|KHN24336.1| (hypothetical protein glysoja_048673 [Glycine soja])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-14
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 30 MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKEN 89
          M +KFGGG +PTGTPS+ WS VVV+ SLLAGAS+VHNIFKPNLTLPP D   +   K +
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIFKPNLTLPPVDGVDSNKQKHD 59

The following BLAST results are available for this feature:

BLAST of Cucsa.010790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQX5_CUCSA	1.9e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1	[more]
V7B431_PHAVU	7.4e-15	70.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G011200g PE=4 SV=1	[more]
K7MVD8_SOYBN	9.6e-15	66.10	Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1	[more]
I1N569_SOYBN	9.6e-15	66.10	Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1	[more]
A0A0B2QRR8_GLYSO	1.6e-14	66.10	Uncharacterized protein OS=Glycine soja GN=glysoja_048673 PE=4 SV=1	[more]

BLAST of Cucsa.010790 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26055.1	2.1e-13	57.63	unknown protein	[more]
AT5G57080.1	5.8e-11	53.85	unknown protein	[more]

BLAST of Cucsa.010790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196132\|gb\|KGN51309.1\|	2.7e-26	100.00	hypothetical protein Csa_5G517080 [Cucumis sativus]	[more]
gi\|593331582\|ref\|XP_007139217.1\|	1.1e-14	70.18	hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris]	[more]
gi\|947052126\|gb\|KRH01655.1\|	1.4e-14	66.10	hypothetical protein GLYMA_18G290700 [Glycine max]	[more]
gi\|955386063\|ref\|XP_014626719.1\|	1.4e-14	66.10	PREDICTED: uncharacterized protein LOC106797182 [Glycine max]	[more]
gi\|734384596\|gb\|KHN24336.1\|	2.4e-14	66.10	hypothetical protein glysoja_048673 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027858	DUF4516

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.010790.1	Cucsa.010790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027858	Protein of unknown function DUF4516	PFAM	PF14990	DUF4516	coord: 40..78 score: 1.1
None	No IPR available	PANTHER	PTHR28492	FAMILY NOT NAMED	coord: 31..87 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.010790	Csa5G517080	Cucumber (Chinese Long) v2	cgycuB286
Cucsa.010790	ClCG09G019790	Watermelon (Charleston Gray)	cgywcgB338
Cucsa.010790	CSPI05G17710	Wild cucumber (PI 183967)	cgycpiB296
Cucsa.010790	CmaCh15G003880	Cucurbita maxima (Rimu)	cgycmaB0542
Cucsa.010790	CmaCh04G026430	Cucurbita maxima (Rimu)	cgycmaB0543
Cucsa.010790	CmoCh04G027650	Cucurbita moschata (Rifu)	cgycmoB0544
Cucsa.010790	CmoCh15G003990	Cucurbita moschata (Rifu)	cgycmoB0543
Cucsa.010790	Lsi02G016360	Bottle gourd (USVL1VR-Ls)	cgylsiB318
Cucsa.010790	MELO3C033702.2	Melon (DHL92) v3.6.1	cgymedB331
Cucsa.010790	CsaV3_5G026630	Cucumber (Chinese Long) v3	cgycucB300
Cucsa.010790	Cla97C09G181220	Watermelon (97103) v2	cgywmbB348
Cucsa.010790	Carg02350	Silver-seed gourd	carcgyB0315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.010790	Silver-seed gourd	carcgyB0766
Cucsa.010790	Watermelon (97103) v2	cgywmbB347
Cucsa.010790	Wax gourd	cgywgoB388
Cucsa.010790	Cucumber (Gy14) v1	cgycgyB017
Cucsa.010790	Melon (DHL92) v3.5.1	cgymeB336
Cucsa.010790	Watermelon (97103) v1	cgywmB359
Cucsa.010790	Cucurbita pepo (Zucchini)	cgycpeB0519
Cucsa.010790	Cucurbita pepo (Zucchini)	cgycpeB0522