MELO3C033702.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033702.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr09 : 4686743 .. 4688084 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGAGAGATGAATCATCCTATTATTTGAATTTATTTTAAAAAATGTTTTGAAATCAAATAATAATGTGAAAAATTAGTAATAATACATTTAAATTTTACTTTTCATATTGGTATGGTTATGGCCATTGGTATTTAAGGGGGAGTTGGGTGGCGGTCAGATTGAATTTTGGAGTCTTCCTAAAGGGAAATTGTAATCTTGGTGTTGGTGGGTGTTCAGCTGAATCATGACTCAGAAATTCGGCGGTGGGTTGCGCCCTACGGGAACTCCCTCTGTTGGTTGGTCTTTTGTCGTCGTCGTCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACCACATCTACAAACCAAATCTTGTACTCTTCCTCTCTATTTTCCTCTTTCTGCTTTGTGCATATACACGTAGACTGACCCTTTAATGATTGTTCATTGTCGGAAATATAGCCATGTATTTGTAGATTACTGGGTGCATTTCAACTTAAACAATGCCTGTAACCTGTTCGATAAAATGCCCATCTTGTTATTTTGTGCGAATTGTTTTATTGTTTCACTGTTAGCCTGTTTTTTTATCAACAGGATTCAGATTTCAGAAATATTATCTTGCTATGTTCGCTTTAAGTCAGCTATCAATTTCAGCTACTTCAGAAGTATGGTCATTTCTTATTCGTGTGCTGCGTGTAATTTAACTTGACAATGCCTGTAACATGTTCGATAAAAGGACCATCTTGTAGGTTATGCCCAGTGCCTCATGATTTGAGTATAAGCCTGTCATTTACTGTTTTTGATTAGTGCATTTCAGAAAAATTACCTTGTTATGTTCTGGAAATCAGATATCAATCTCCACTTATATTCTTTTTCCAGAAAATCTAAGGATCACCCATCCATGTTCTATTTCTTGGCTTTCTTTTATTAGCTTTTCATAAAATTCCATAATTTTGTTATGTTGATAGATGTTTGCAGTGGAATTGCTTCCTCCATTTCTCTAGTTTCTCTAAAGAGTGCTATATGCAAAGTGGTCTCTGAATTTCTAACTTTGCCCTTTCTAATTTCTTTGTAGACCTTGCCTCCGGCGGATAGTGCCCAGACGACCAACAAGAAAGACCCTATTTAAAAATAAATTACTTTATAACCATTAGAGTACAGTTAGTTTATTTCTTTCCAAATTCATGTTTTTCTTATTATTAGTTTTTGTTTACATGCTTTGATGTCGAAGTTCTGTTTTGTTGGAAAAGGAACAAAAGAATCTTTAAAGGTTCTTTCGAGAACTGCAAGTGTTGTAAAATTCACCAGTTATAAATAACTAGTGCATTCTCTCTTTGGGAATTTTTTTTTTCTTTGGCCAT

mRNA sequence

AAATGAGAGATGAATCATCCTATTATTTGAATTTATTTTAAAAAATGTTTTGAAATCAAATAATAATGTGAAAAATTAGTAATAATACATTTAAATTTTACTTTTCATATTGGTATGGTTATGGCCATTGGTATTTAAGGGGGAGTTGGGTGGCGGTCAGATTGAATTTTGGAGTCTTCCTAAAGGGAAATTGTAATCTTGGTGTTGGTGGGTGTTCAGCTGAATCATGACTCAGAAATTCGGCGGTGGGTTGCGCCCTACGGGAACTCCCTCTGTTGGTTGGTCTTTTGTCGTCGTCGTCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACCACATCTACAAACCAAATCTTACCTTGCCTCCGGCGGATAGTGCCCAGACGACCAACAAGAAAGACCCTATTTAAAAATAAATTACTTTATAACCATTAGAGTACAGTTAGTTTATTTCTTTCCAAATTCATGTTTTTCTTATTATTAGTTTTTGTTTACATGCTTTGATGTCGAAGTTCTGTTTTGTTGGAAAAGGAACAAAAGAATCTTTAAAGGTTCTTTCGAGAACTGCAAGTGTTGTAAAATTCACCAGTTATAAATAACTAGTGCATTCTCTCTTTGGGAATTTTTTTTTTCTTTGGCCAT

Coding sequence (CDS)

ATGACTCAGAAATTCGGCGGTGGGTTGCGCCCTACGGGAACTCCCTCTGTTGGTTGGTCTTTTGTCGTCGTCGTCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACCACATCTACAAACCAAATCTTACCTTGCCTCCGGCGGATAGTGCCCAGACGACCAACAAGAAAGACCCTATTTAA

Protein sequence

MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKKDPI

Homology

[Close]

BLAST of MELO3C033702.2 vs. NCBI nr
Match: KGN51309.1 (hypothetical protein Csa_5G517080 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 6.7e-22
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQ-TTNKKDP 60
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVH+I+KPNLTLPPADSAQ TTNK++P
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 60

[Close]

BLAST of MELO3C033702.2 vs. NCBI nr
Match: XP_007139217.1 (hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris] >ESW11211.1 hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNLTLPPAD    T +K
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPADGVNRTKQK 57

[Close]

BLAST of MELO3C033702.2 vs. NCBI nr
Match: KRH01655.1 (hypothetical protein GLYMA_18G290700 [Glycine max] >KRH01656.1 hypothetical protein GLYMA_18G290700 [Glycine max] >KRH01657.1 hypothetical protein GLYMA_18G290700 [Glycine max] >KRH01658.1 hypothetical protein GLYMA_18G290700 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNLTLPP D   +T +K
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQK 57

[Close]

BLAST of MELO3C033702.2 vs. NCBI nr
Match: XP_014626719.1 (uncharacterized protein LOC106797182 [Glycine max] >KRH01653.1 hypothetical protein GLYMA_18G290700 [Glycine max] >KRH01654.1 hypothetical protein GLYMA_18G290700 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNLTLPP D   +T +K
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQK 76

[Close]

BLAST of MELO3C033702.2 vs. NCBI nr
Match: EEF50078.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFG G +PTGTPS+GWS VVVV SLLAGAS+VH+IYKP+LTLPPAD     NKK
Sbjct: 1  MNKKFGAGKQPTGTPSLGWSCVVVVVSLLAGASVVHNIYKPDLTLPPADIIDAANKK 57

[Close]

BLAST of MELO3C033702.2 vs. TAIR10
Match: AT4G26055.1 (unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-13
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKKD 59
          M  KF GG +PTGTPS+ WS VVVV+SLLAGAS+VH+IYKP+LTLP  ++ +   K++
Sbjct: 1  MNNKF-GGKKPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDLTLPQIENDEGDEKEE 57

[Close]

BLAST of MELO3C033702.2 vs. TAIR10
Match: AT5G57080.1 (unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 8  GLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKKDPI 61
          G  PTGTPS+  S +VVV+SLLAGAS+VH+IYKP+L+LPP +S++   K D +
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDLSLPPLESSEVAKKDDSV 59

[Close]

BLAST of MELO3C033702.2 vs. TrEMBL
Match: tr|A0A0A0KQX5|A0A0A0KQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQ-TTNKKDP 60
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVH+I+KPNLTLPPADSAQ TTNK++P
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNLTLPPADSAQTTTNKENP 60

[Close]

BLAST of MELO3C033702.2 vs. TrEMBL
Match: tr|V7B431|V7B431_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G011200g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.0e-15
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNLTLPPAD    T +K
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPADGVNRTKQK 57

[Close]

BLAST of MELO3C033702.2 vs. TrEMBL
Match: tr|I1N569|I1N569_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=106797182 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNLTLPP D   +T +K
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQK 57

[Close]

BLAST of MELO3C033702.2 vs. TrEMBL
Match: tr|K7MVD8|K7MVD8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=106797182 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNLTLPP D   +T +K
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNLTLPPVDGVDSTKQK 76

[Close]

BLAST of MELO3C033702.2 vs. TrEMBL
Match: tr|B9RFV7|B9RFV7_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1437540 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLTLPPADSAQTTNKK 58
          M +KFG G +PTGTPS+GWS VVVV SLLAGAS+VH+IYKP+LTLPPAD     NKK
Sbjct: 1  MNKKFGAGKQPTGTPSLGWSCVVVVVSLLAGASVVHNIYKPDLTLPPADIIDAANKK 57

The following BLAST results are available for this feature:

BLAST of MELO3C033702.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51309.1	6.7e-22	90.16	hypothetical protein Csa_5G517080 [Cucumis sativus]	[more]
XP_007139217.1	1.4e-14	71.93	hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris] >ESW11211.1 hypothet...	[more]
KRH01655.1	2.3e-14	70.18	hypothetical protein GLYMA_18G290700 [Glycine max] >KRH01656.1 hypothetical prot...	[more]
XP_014626719.1	2.3e-14	70.18	uncharacterized protein LOC106797182 [Glycine max] >KRH01653.1 hypothetical prot...	[more]
EEF50078.1	2.3e-14	71.93	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of MELO3C033702.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26055.1	1.1e-13	60.34	unknown protein	[more]
AT5G57080.1	4.5e-12	58.49	unknown protein	[more]

BLAST of MELO3C033702.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C033702.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQX5\|A0A0A0KQX5_CUCSA	4.4e-22	90.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1	[more]
tr\|V7B431\|V7B431_PHAVU	9.0e-15	71.93	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G011200g PE=4 ...	[more]
tr\|I1N569\|I1N569_SOYBN	1.5e-14	70.18	Uncharacterized protein OS=Glycine max OX=3847 GN=106797182 PE=4 SV=1	[more]
tr\|K7MVD8\|K7MVD8_SOYBN	1.5e-14	70.18	Uncharacterized protein OS=Glycine max OX=3847 GN=106797182 PE=4 SV=1	[more]
tr\|B9RFV7\|B9RFV7_RICCO	1.5e-14	71.93	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1437540 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027858	DUF4516

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033702.2.1	MELO3C033702.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027858	Protein of unknown function DUF4516	PFAM	PF14990	DUF4516	coord: 11..49 e-value: 9.7E-16 score: 57.1
None	No IPR available	PANTHER	PTHR28492	FAMILY NOT NAMED	coord: 1..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C033702.2	Csa5G517080	Cucumber (Chinese Long) v2	cumedB338
MELO3C033702.2	CSPI05G17710	Wild cucumber (PI 183967)	cpimedB340
MELO3C033702.2	Cucsa.010790	Cucumber (Gy14) v1	cgymedB331
MELO3C033702.2	CmaCh04G026430	Cucurbita maxima (Rimu)	cmamedB720
MELO3C033702.2	CmoCh04G027650	Cucurbita moschata (Rifu)	cmomedB713
MELO3C033702.2	Lsi02G016360	Bottle gourd (USVL1VR-Ls)	lsimedB171
MELO3C033702.2	CsGy5G017370	Cucumber (Gy14) v2	cgybmedB300
MELO3C033702.2	ClCG09G019790	Watermelon (Charleston Gray)	medwcgB000
MELO3C033702.2	Cla97C09G181220	Watermelon (97103) v2	medwmbB034
MELO3C033702.2	Carg02350	Silver-seed gourd	carmedB0270
MELO3C033702.2	CsaV3_5G026630	Cucumber (Chinese Long) v3	cucmedB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033702.2	Wax gourd	medwgoB020
MELO3C033702.2	Cucumber (Gy14) v1	cgymedB056
MELO3C033702.2	Cucurbita maxima (Rimu)	cmamedB285
MELO3C033702.2	Cucurbita moschata (Rifu)	cmomedB271
MELO3C033702.2	Cucurbita pepo (Zucchini)	cpemedB182
MELO3C033702.2	Cucurbita pepo (Zucchini)	cpemedB418
MELO3C033702.2	Wild cucumber (PI 183967)	cpimedB259
MELO3C033702.2	Bottle gourd (USVL1VR-Ls)	lsimedB128
MELO3C033702.2	Watermelon (Charleston Gray)	medwcgB023
MELO3C033702.2	Watermelon (97103) v1	medwmB001
MELO3C033702.2	Watermelon (97103) v1	medwmB034
MELO3C033702.2	Silver-seed gourd	carmedB0694