CmoCh04G027650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G027650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChrom
LocationCmo_Chr04 : 19979684 .. 19981455 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAGAAATTCGGTGGTCGGTTGCTCCCCACTGGAACCCCCTCGGTGGGTTGGTCCTTCGTCGTCGTCATCTCTTCGCTTCTCGCCGGCGCCTCCGTCGTCCACAACATCTACAAACCGAATCTTGTATTCTCTCAATCTGTTATGTTCTTAAATACGTAGAGTGACTCTCTGATGATTATTCATAGTCGGAAATATGGTCATGTATATGACGATTGCTGGGTGCAATTTAATTTGATAATGCCTATAACCTGTTTGATGAAATGTTCACCTTTTATTTTTTGCCTATTGTCTTCTTATTTGAGTATAAGACTTCCATTTCGGTTTCTGATCAATGAGATTATGAACAATTGTCTAGCTATGTTCTTGAAATCAGATATCAATTTCAGCTTCTTCTTTTTCCAGAAATTAGGTGTGTGTGCCGTGTGCAATTTAACTTGACAATGCCTGCAACCTGTTTGATGAAGGCACATCTTATACTTCTGCCTACTGTCTTCTAATTTGACATCTCCTCGGATCAATGGGATTCAGAACAACTGTCTAGCCATGTTATTGAAAACAGTATTCCATTTCTCTAGTGGATTTCCTTGTTCTTTTTAATTTTTATGTCTATTCTTTCACCAAAATTTTTAAAACACTTTTAGTAGGGAGGGAGAGTTTTTACTTATAAAAAATGCTTCATTTTCGGAGGGAGAGTTTCTACATTCTTATAAAAAATGTTCATTTTCTCCCAACCGAGGTGTGAGATCTCACAATTCACCCCACAATTCACAATCCACAATTCACCCCCTTCTGGGCTCAATGTCTTCGTTGACACTCGTTTTCTTCTCCAATCGATAAAGGACCCTCCCAATCCACCCCTTCAAAGCCCGACATCCTTACTAACATACCGCCTCGTGTCTACCCCTTCGGGACTCAGCCTCCTTACTGATACATCACCCGATGGCTAGCTCTAATACCATTTGTAACAACTCAAGCCCACCGATAGTAGATATTTATTTTTTGAGCTCTCCTTTTAGGCTTCCCTTCAAGGTTTTAAAATATGTTTGTCAGGAAGAAGTTTCTACACCGTTACAAAAAATGTTTCACTCTTCTCCCCAATCGATATGAGTAAGATTCTTTATACAAATGAAAATTTCAGTTTATTGTTTCTTAAGATAGGATCATATCATGTGCTGCGTGCAACTTAACTCGTTGGATGATGAAAATTTCACATCGGCTAATTTAGGAGATGATCATGAGTTTATAATCAAAGAATACTATCTGTATTAGTGTGAGATATTTTGGAAAACCAAAGTAAAACCACGAGAGCATAAGCTCTGTGATTCTTTAACTTAACAATGAGTGCAACCTGATTGATGAAAGTTCCACCCTGAACTTTATTCCGATTGCCTTCTTATTTGAGTATAGGTCTGCTGTTTCCTGTTTCTGATAAAAGGAATTCAGAAAGACTGTCTAGTTGTGCGCTTGAAATCAGATATCAATTTCAGCTTCTTCATTCTTCTTCTTCCTCCCTTTTCTTTTCCAGAAACATCTTGGGATTACTGAGCCATTTTCTGCTTCTTGCATTTCTTTTAGTACCTTTTCATAAAATGTTCGCAAGTTTGTTCTGTTCATACATTTATGCAATTGTATTACTTTATGGTTTAGCAGCATATAGTTTGTCTTTCCAGATAAATGTTTTTCTCATCGTTCAGCTCAAACACTTTTTCACACGCTTTGATGTTGAAGTTCTCTATTGTTGGGAAAGGAAAAAAAAGAATCTTTGA

mRNA sequence

ATGGCTCAGAAATTCGGTGGTCGGTTGCTCCCCACTGGAACCCCCTCGGTGGGTTGGTCCTTCGTCGTCGTCATCTCTTCGCTTCTCGCCGGCGCCTCCGTCGTCCACAACATCTACAAACCGAATCTTATAAATGTTTTTCTCATCGTTCAGCTCAAACACTTTTTCACACGCTTTGATGTTGAAGTTCTCTATTGTTGGGAAAGGAAAAAAAAGAATCTTTGA

Coding sequence (CDS)

ATGGCTCAGAAATTCGGTGGTCGGTTGCTCCCCACTGGAACCCCCTCGGTGGGTTGGTCCTTCGTCGTCGTCATCTCTTCGCTTCTCGCCGGCGCCTCCGTCGTCCACAACATCTACAAACCGAATCTTATAAATGTTTTTCTCATCGTTCAGCTCAAACACTTTTTCACACGCTTTGATGTTGAAGTTCTCTATTGTTGGGAAAGGAAAAAAAAGAATCTTTGA
Homology
[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A0A0KQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M QKFGG L PTGTPSVGWSFVVVISSLLAGAS+VHNI+KPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A077RYL3_WHEAT (Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF014700060CFD_c1 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 3  QKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLI 45
          +KFGG  LPTGTPS+ WS VVV++SLLAGASVVHN+YKP+++
Sbjct: 6  KKFGGGRLPTGTPSLAWSSVVVVASLLAGASVVHNVYKPDMV 47

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A077S0I3_WHEAT (Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF036700050CFD_c1 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 

Query: 3  QKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLINV 47
          +KFGG  LPTGTPS+ WS VVV+ SLLAGASVVHN+YKP+++ +
Sbjct: 6  RKFGGGRLPTGTPSLAWSSVVVVVSLLAGASVVHNVYKPDMVEI 49

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A0S3RRC0_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.04G026700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 51 MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 93

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: I1N569_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. TAIR10
Match: AT4G26055.1 (AT4G26055.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M  KFGG+  PTGTPS+ WS VVV++SLLAGASVVHNIYKP+L
Sbjct: 1  MNNKFGGKK-PTGTPSLAWSTVVVVASLLAGASVVHNIYKPDL 42

[Close]
BLAST of CmoCh04G027650 vs. TAIR10
Match: AT5G57080.1 (AT5G57080.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M + + G+L PTGTPS+  S +VV++SLLAGASVVHNIYKP+L
Sbjct: 1  MKKPYKGKL-PTGTPSLAMSTLVVVASLLAGASVVHNIYKPDL 42

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|700196132|gb|KGN51309.1| (hypothetical protein Csa_5G517080 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M QKFGG L PTGTPSVGWSFVVVISSLLAGAS+VHNI+KPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|1012353786|gb|KYP64974.1| (Actin-11 [Cajanus cajan])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGKKPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|947052126|gb|KRH01655.1| (hypothetical protein GLYMA_18G290700 [Glycine max])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|593331582|ref|XP_007139217.1| (hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|955386063|ref|XP_014626719.1| (PREDICTED: uncharacterized protein LOC106797182 [Glycine max])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 62

The following BLAST results are available for this feature:
BLAST of CmoCh04G027650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQX5_CUCSA9.5e-1388.37Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1[more]
A0A077RYL3_WHEAT3.8e-0971.43Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF014700060CFD_c1 PE=4 SV... [more]
A0A077S0I3_WHEAT3.8e-0968.18Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF036700050CFD_c1 PE=4 SV... [more]
A0A0S3RRC0_PHAAN3.8e-0976.74Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.04... [more]
I1N569_SOYBN3.8e-0976.74Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1[more]
BLAST of CmoCh04G027650 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26055.11.6e-1174.42 unknown protein[more]
AT5G57080.19.8e-0965.12 unknown protein[more]
BLAST of CmoCh04G027650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196132|gb|KGN51309.1|1.4e-1288.37hypothetical protein Csa_5G517080 [Cucumis sativus][more]
gi|1012353786|gb|KYP64974.1|5.4e-0976.74Actin-11 [Cajanus cajan][more]
gi|947052126|gb|KRH01655.1|5.4e-0976.74hypothetical protein GLYMA_18G290700 [Glycine max][more]
gi|593331582|ref|XP_007139217.1|5.4e-0976.74hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris][more]
gi|955386063|ref|XP_014626719.1|5.4e-0976.74PREDICTED: uncharacterized protein LOC106797182 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027858DUF4516
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G027650.1CmoCh04G027650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027858Protein of unknown function DUF4516PFAMPF14990DUF4516coord: 11..43
score: 1.1
NoneNo IPR availablePANTHERPTHR28492FAMILY NOT NAMEDcoord: 2..43
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G027650Cucsa.010790Cucumber (Gy14) v1cgycmoB0544
CmoCh04G027650CmaCh04G026430Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G027650Csa5G517080Cucumber (Chinese Long) v2cmocuB716
CmoCh04G027650ClCG09G019790Watermelon (Charleston Gray)cmowcgB608
CmoCh04G027650CSPI05G17710Wild cucumber (PI 183967)cmocpiB724
CmoCh04G027650Lsi02G016360Bottle gourd (USVL1VR-Ls)cmolsiB640
CmoCh04G027650MELO3C033702.2Melon (DHL92) v3.6.1cmomedB713
CmoCh04G027650CsaV3_5G026630Cucumber (Chinese Long) v3cmocucB0848
CmoCh04G027650Cla97C09G181220Watermelon (97103) v2cmowmbB772
CmoCh04G027650CsGy5G017370Cucumber (Gy14) v2cgybcmoB626
CmoCh04G027650Carg02350Silver-seed gourdcarcmoB0370
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G027650CmoCh15G003990Cucurbita moschata (Rifu)cmocmoB261
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G027650Cucumber (Chinese Long) v3cmocucB0869
CmoCh04G027650Cucumber (Chinese Long) v3cmocucB0832
CmoCh04G027650Watermelon (97103) v2cmowmbB728
CmoCh04G027650Wax gourdcmowgoB0874
CmoCh04G027650Cucurbita moschata (Rifu)cmocmoB476
CmoCh04G027650Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G027650Melon (DHL92) v3.5.1cmomeB624
CmoCh04G027650Watermelon (97103) v1cmowmB646
CmoCh04G027650Watermelon (97103) v1cmowmB717
CmoCh04G027650Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G027650Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G027650Bottle gourd (USVL1VR-Ls)cmolsiB626
CmoCh04G027650Bottle gourd (USVL1VR-Ls)cmolsiB667
CmoCh04G027650Cucumber (Gy14) v2cgybcmoB520
CmoCh04G027650Cucumber (Gy14) v2cgybcmoB648
CmoCh04G027650Cucumber (Gy14) v2cgybcmoB649
CmoCh04G027650Melon (DHL92) v3.6.1cmomedB730
CmoCh04G027650Melon (DHL92) v3.6.1cmomedB796
CmoCh04G027650Silver-seed gourdcarcmoB0940