CmoCh04G027650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G027650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChrom
LocationCmo_Chr04 : 19979684 .. 19981455 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAGAAATTCGGTGGTCGGTTGCTCCCCACTGGAACCCCCTCGGTGGGTTGGTCCTTCGTCGTCGTCATCTCTTCGCTTCTCGCCGGCGCCTCCGTCGTCCACAACATCTACAAACCGAATCTTGTATTCTCTCAATCTGTTATGTTCTTAAATACGTAGAGTGACTCTCTGATGATTATTCATAGTCGGAAATATGGTCATGTATATGACGATTGCTGGGTGCAATTTAATTTGATAATGCCTATAACCTGTTTGATGAAATGTTCACCTTTTATTTTTTGCCTATTGTCTTCTTATTTGAGTATAAGACTTCCATTTCGGTTTCTGATCAATGAGATTATGAACAATTGTCTAGCTATGTTCTTGAAATCAGATATCAATTTCAGCTTCTTCTTTTTCCAGAAATTAGGTGTGTGTGCCGTGTGCAATTTAACTTGACAATGCCTGCAACCTGTTTGATGAAGGCACATCTTATACTTCTGCCTACTGTCTTCTAATTTGACATCTCCTCGGATCAATGGGATTCAGAACAACTGTCTAGCCATGTTATTGAAAACAGTATTCCATTTCTCTAGTGGATTTCCTTGTTCTTTTTAATTTTTATGTCTATTCTTTCACCAAAATTTTTAAAACACTTTTAGTAGGGAGGGAGAGTTTTTACTTATAAAAAATGCTTCATTTTCGGAGGGAGAGTTTCTACATTCTTATAAAAAATGTTCATTTTCTCCCAACCGAGGTGTGAGATCTCACAATTCACCCCACAATTCACAATCCACAATTCACCCCCTTCTGGGCTCAATGTCTTCGTTGACACTCGTTTTCTTCTCCAATCGATAAAGGACCCTCCCAATCCACCCCTTCAAAGCCCGACATCCTTACTAACATACCGCCTCGTGTCTACCCCTTCGGGACTCAGCCTCCTTACTGATACATCACCCGATGGCTAGCTCTAATACCATTTGTAACAACTCAAGCCCACCGATAGTAGATATTTATTTTTTGAGCTCTCCTTTTAGGCTTCCCTTCAAGGTTTTAAAATATGTTTGTCAGGAAGAAGTTTCTACACCGTTACAAAAAATGTTTCACTCTTCTCCCCAATCGATATGAGTAAGATTCTTTATACAAATGAAAATTTCAGTTTATTGTTTCTTAAGATAGGATCATATCATGTGCTGCGTGCAACTTAACTCGTTGGATGATGAAAATTTCACATCGGCTAATTTAGGAGATGATCATGAGTTTATAATCAAAGAATACTATCTGTATTAGTGTGAGATATTTTGGAAAACCAAAGTAAAACCACGAGAGCATAAGCTCTGTGATTCTTTAACTTAACAATGAGTGCAACCTGATTGATGAAAGTTCCACCCTGAACTTTATTCCGATTGCCTTCTTATTTGAGTATAGGTCTGCTGTTTCCTGTTTCTGATAAAAGGAATTCAGAAAGACTGTCTAGTTGTGCGCTTGAAATCAGATATCAATTTCAGCTTCTTCATTCTTCTTCTTCCTCCCTTTTCTTTTCCAGAAACATCTTGGGATTACTGAGCCATTTTCTGCTTCTTGCATTTCTTTTAGTACCTTTTCATAAAATGTTCGCAAGTTTGTTCTGTTCATACATTTATGCAATTGTATTACTTTATGGTTTAGCAGCATATAGTTTGTCTTTCCAGATAAATGTTTTTCTCATCGTTCAGCTCAAACACTTTTTCACACGCTTTGATGTTGAAGTTCTCTATTGTTGGGAAAGGAAAAAAAAGAATCTTTGA

mRNA sequence

ATGGCTCAGAAATTCGGTGGTCGGTTGCTCCCCACTGGAACCCCCTCGGTGGGTTGGTCCTTCGTCGTCGTCATCTCTTCGCTTCTCGCCGGCGCCTCCGTCGTCCACAACATCTACAAACCGAATCTTATAAATGTTTTTCTCATCGTTCAGCTCAAACACTTTTTCACACGCTTTGATGTTGAAGTTCTCTATTGTTGGGAAAGGAAAAAAAAGAATCTTTGA

Coding sequence (CDS)

ATGGCTCAGAAATTCGGTGGTCGGTTGCTCCCCACTGGAACCCCCTCGGTGGGTTGGTCCTTCGTCGTCGTCATCTCTTCGCTTCTCGCCGGCGCCTCCGTCGTCCACAACATCTACAAACCGAATCTTATAAATGTTTTTCTCATCGTTCAGCTCAAACACTTTTTCACACGCTTTGATGTTGAAGTTCTCTATTGTTGGGAAAGGAAAAAAAAGAATCTTTGA
Homology
[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A0A0KQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.5e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M QKFGG L PTGTPSVGWSFVVVISSLLAGAS+VHNI+KPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A077RYL3_WHEAT (Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF014700060CFD_c1 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 3  QKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLI 45
          +KFGG  LPTGTPS+ WS VVV++SLLAGASVVHN+YKP+++
Sbjct: 6  KKFGGGRLPTGTPSLAWSSVVVVASLLAGASVVHNVYKPDMV 47

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A077S0I3_WHEAT (Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF036700050CFD_c1 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 

Query: 3  QKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLINV 47
          +KFGG  LPTGTPS+ WS VVV+ SLLAGASVVHN+YKP+++ +
Sbjct: 6  RKFGGGRLPTGTPSLAWSSVVVVVSLLAGASVVHNVYKPDMVEI 49

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: A0A0S3RRC0_PHAAN (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.04G026700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 51 MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 93

[Close]
BLAST of CmoCh04G027650 vs. TrEMBL
Match: I1N569_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. TAIR10
Match: AT4G26055.1 (AT4G26055.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M  KFGG+  PTGTPS+ WS VVV++SLLAGASVVHNIYKP+L
Sbjct: 1  MNNKFGGKK-PTGTPSLAWSTVVVVASLLAGASVVHNIYKPDL 42

[Close]
BLAST of CmoCh04G027650 vs. TAIR10
Match: AT5G57080.1 (AT5G57080.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M + + G+L PTGTPS+  S +VV++SLLAGASVVHNIYKP+L
Sbjct: 1  MKKPYKGKL-PTGTPSLAMSTLVVVASLLAGASVVHNIYKPDL 42

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|700196132|gb|KGN51309.1| (hypothetical protein Csa_5G517080 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M QKFGG L PTGTPSVGWSFVVVISSLLAGAS+VHNI+KPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|1012353786|gb|KYP64974.1| (Actin-11 [Cajanus cajan])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGKKPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|947052126|gb|KRH01655.1| (hypothetical protein GLYMA_18G290700 [Glycine max])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|593331582|ref|XP_007139217.1| (hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of CmoCh04G027650 vs. NCBI nr
Match: gi|955386063|ref|XP_014626719.1| (PREDICTED: uncharacterized protein LOC106797182 [Glycine max])

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1 

Query: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNL 44
          M +KFGG   PTGTPS+ WS VVV+ SLLAGASVVHNIYKPNL
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 62

The following BLAST results are available for this feature:
BLAST of CmoCh04G027650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQX5_CUCSA9.5e-1388.37Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1[more]
A0A077RYL3_WHEAT3.8e-0971.43Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF014700060CFD_c1 PE=4 SV... [more]
A0A077S0I3_WHEAT3.8e-0968.18Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF036700050CFD_c1 PE=4 SV... [more]
A0A0S3RRC0_PHAAN3.8e-0976.74Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis GN=Vigan.04... [more]
I1N569_SOYBN3.8e-0976.74Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1[more]
BLAST of CmoCh04G027650 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26055.11.6e-1174.42 unknown protein[more]
AT5G57080.19.8e-0965.12 unknown protein[more]
BLAST of CmoCh04G027650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196132|gb|KGN51309.1|1.4e-1288.37hypothetical protein Csa_5G517080 [Cucumis sativus][more]
gi|1012353786|gb|KYP64974.1|5.4e-0976.74Actin-11 [Cajanus cajan][more]
gi|947052126|gb|KRH01655.1|5.4e-0976.74hypothetical protein GLYMA_18G290700 [Glycine max][more]
gi|593331582|ref|XP_007139217.1|5.4e-0976.74hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris][more]
gi|955386063|ref|XP_014626719.1|5.4e-0976.74PREDICTED: uncharacterized protein LOC106797182 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027858DUF4516
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G027650.1CmoCh04G027650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027858Protein of unknown function DUF4516PFAMPF14990DUF4516coord: 11..43
score: 1.1
NoneNo IPR availablePANTHERPTHR28492FAMILY NOT NAMEDcoord: 2..43
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G027650Cucsa.010790Cucumber (Gy14) v1cgycmoB0544
CmoCh04G027650CmaCh04G026430Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G027650Csa5G517080Cucumber (Chinese Long) v2cmocuB716
CmoCh04G027650ClCG09G019790Watermelon (Charleston Gray)cmowcgB608
CmoCh04G027650CSPI05G17710Wild cucumber (PI 183967)cmocpiB724
CmoCh04G027650Lsi02G016360Bottle gourd (USVL1VR-Ls)cmolsiB640
CmoCh04G027650MELO3C033702.2Melon (DHL92) v3.6.1cmomedB713
CmoCh04G027650CsaV3_5G026630Cucumber (Chinese Long) v3cmocucB0848
CmoCh04G027650Cla97C09G181220Watermelon (97103) v2cmowmbB772
CmoCh04G027650CsGy5G017370Cucumber (Gy14) v2cgybcmoB626
CmoCh04G027650Carg02350Silver-seed gourdcarcmoB0370
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G027650CmoCh15G003990Cucurbita moschata (Rifu)cmocmoB261
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G027650Cucurbita moschata (Rifu)cmocmoB476
CmoCh04G027650Cucurbita maxima (Rimu)cmacmoB308
CmoCh04G027650Melon (DHL92) v3.5.1cmomeB624
CmoCh04G027650Watermelon (97103) v1cmowmB646
CmoCh04G027650Watermelon (97103) v1cmowmB717
CmoCh04G027650Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G027650Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G027650Bottle gourd (USVL1VR-Ls)cmolsiB626
CmoCh04G027650Bottle gourd (USVL1VR-Ls)cmolsiB667
CmoCh04G027650Cucumber (Gy14) v2cgybcmoB520
CmoCh04G027650Cucumber (Gy14) v2cgybcmoB648
CmoCh04G027650Cucumber (Gy14) v2cgybcmoB649
CmoCh04G027650Melon (DHL92) v3.6.1cmomedB730
CmoCh04G027650Melon (DHL92) v3.6.1cmomedB796
CmoCh04G027650Silver-seed gourdcarcmoB0940
CmoCh04G027650Cucumber (Chinese Long) v3cmocucB0869
CmoCh04G027650Cucumber (Chinese Long) v3cmocucB0832
CmoCh04G027650Watermelon (97103) v2cmowmbB728
CmoCh04G027650Wax gourdcmowgoB0874