CmoCh15G003990 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G003990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr15 : 1832498 .. 1833909 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGCGAAGGAAAGTTTAAACATTATTTAAAATTTAGGTCATATTTGATTTGGGCCAATTTTGGGAGATTGGTGCCGAGCTGGGCCGAGGGAAGTTGGCGGGCAGATTGAATTGCGGAACCCTATGTAGCGTGATGTATTTGGGAGTCTCCCGAGTCATTTTACGGGGAATTGAAATCTTGGTGGTGGGTGTTGAGCTGAATCATGGCTCGGAAATTCGGCGGTGGGTTGCGCCCGACTGGAACTCCCTCAGTGGGTTGGTCCTTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTCCACAACATCTACAAACCAAATCTTGTACGCTCCCTCTTTCTCTCTCAATCTGTTCTGTGCATATATCCGTAGAGCGACTCTTTGATGATTTTTCATTGTCGGAAATATAGTCATGTGTCTGTCGATTGGTGGTTTGCCATGCCTGTAACCTGTTCGATGAAACGCCCACCTTGTATTTTGTGCCTATTGTTTTCTTCTTTGATTATGAGCTTTCATTCTCTGTTTTTGATCAATGGGGGGTTCGGAAAAATTGTCCTGCTATGTTTTCTTGATATTAGATATCAATTTCAACTTCTGAGTTTTTTCAGAAATCCATTTGGTACCGTTTGCAATTGAACTTGACAATGCCTGCAACCTGTTCGATGAAAGTCCACCTTGTAATTTATTCCCACTGCCTTCTTATCTGAGTATTAGCCTGTTATTTACTGCTTTTGATCAATGGGTTTAAGAAATCAAATATCAACTTTTTCCCTTTTTCCAGAAATTCCAAGGATCACCGATCCGTTCTCTATTTCTTGCTTTTCTTTTTTGTTAGCTGTTCATAAAAAATTCAATCTTTTCTGTTCATACATTTTTGCTATCGTGTTGCTTCATCCATTTGTCTTGTAGTCTCCCAGTTTCTAACTTTTTATCGTTTTAATGTTCTTGTAGACCTTGCCTCCAGTGGATGGCGTCCAAGCGACCAGCAAGAAAGACCATGTTTAAAATCAATTACTTTATAACTTCATTTCTTTTCAGTTTTCAGAAACATGTTTCTGTTATCGTTGAGCTCATATTGTTTTTCCGCACGTTTTGGTGTGAAAGTTCTCTACGGTTCGGAATGGAACAATGGAGTGTTTGAGGGAGATTCATCTCCAGAGCTTCAAGCGTTGTAAAATTCACGCGTTATAACTAGTGCATTCTCCCTTTTGTTACTGTGATTCTTTATAATTCACAGCTGCTGCTTTACCTTGTTCAAGAAAAGAGTGACTTCACCTTTTACATCGTTCAATCAAAGAGATAGTGAAACCCATATTTACAAGGTTGAGGATTTCATTGACTCGTATTTTTGTTCATGTTCAGGATTTTGTTCGTTTACTCGACTGTAAAGTTCAGGTCAAGTAA

mRNA sequence

TAAGCGAAGGAAAGTTTAAACATTATTTAAAATTTAGGTCATATTTGATTTGGGCCAATTTTGGGAGATTGGTGCCGAGCTGGGCCGAGGGAAGTTGGCGGGCAGATTGAATTGCGGAACCCTATGTAGCGTGATGTATTTGGGAGTCTCCCGAGTCATTTTACGGGGAATTGAAATCTTGGTGGTGGGTGTTGAGCTGAATCATGGCTCGGAAATTCGGCGGTGGGTTGCGCCCGACTGGAACTCCCTCAGTGGGTTGGTCCTTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTCCACAACATCTACAAACCAAATCTTAAATCCATTTGGTACCGTTTGCAATTGAACTTGACAATGCCTGCAACCTGTTCGATGAAAGTCCACCTTACCTTGCCTCCAGTGGATGGCGTCCAAGCGACCAGCAAGAAAGACCATAAACATGTTTCTGTTATCGTTGAGCTCATATTGTTTTTCCGCACGTTTTGGTGTGAAAGTTCTCTACGGTTCGGAATGGAACAATGGAGTGATTTTGTTCGTTTACTCGACTGTAAAGTTCAGGTCAAGTAA

Coding sequence (CDS)

ATGGCTCGGAAATTCGGCGGTGGGTTGCGCCCGACTGGAACTCCCTCAGTGGGTTGGTCCTTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTCCACAACATCTACAAACCAAATCTTAAATCCATTTGGTACCGTTTGCAATTGAACTTGACAATGCCTGCAACCTGTTCGATGAAAGTCCACCTTACCTTGCCTCCAGTGGATGGCGTCCAAGCGACCAGCAAGAAAGACCATAAACATGTTTCTGTTATCGTTGAGCTCATATTGTTTTTCCGCACGTTTTGGTGTGAAAGTTCTCTACGGTTCGGAATGGAACAATGGAGTGATTTTGTTCGTTTACTCGACTGTAAAGTTCAGGTCAAGTAA

Homology

[Close]

BLAST of CmoCh15G003990 vs. TrEMBL
Match: A0A0A0KQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 47/82 (57.32%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M +KFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVHNI+KPN                  
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPN------------------ 59

Query: 61 SMKVHLTLPPVDGVQATSKKDH 83
               LTLPP D  Q T+ K++
Sbjct: 61 -----LTLPPADSAQTTTNKEN 59

[Close]

BLAST of CmoCh15G003990 vs. TrEMBL
Match: I1N569_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG +PTGTPS+ WS VVVV SLLAGAS+VHNIYKPN                  
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPN------------------ 57

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPPVDGV +T +K
Sbjct: 61 -----LTLPPVDGVDSTKQK 57

[Close]

BLAST of CmoCh15G003990 vs. TrEMBL
Match: K7MVD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG +PTGTPS+ WS VVVV SLLAGAS+VHNIYKPN                  
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPN------------------ 76

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPPVDGV +T +K
Sbjct: 80 -----LTLPPVDGVDSTKQK 76

[Close]

BLAST of CmoCh15G003990 vs. TrEMBL
Match: V7B431_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G011200g PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 44/80 (55.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG +PTGTPS+ WS VVVV SLLAGAS+VHNIYKPN                  
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPN------------------ 57

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPP DGV  T +K
Sbjct: 61 -----LTLPPADGVNRTKQK 57

[Close]

BLAST of CmoCh15G003990 vs. TrEMBL
Match: A0A0L9TEH6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan549s011400 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 44/80 (55.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG  PTGTPS+ WS VV+V SLLAGAS+VHNIYKPN                  
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSCVVIVFSLLAGASVVHNIYKPN------------------ 57

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPPVDGV  T +K
Sbjct: 61 -----LTLPPVDGVDRTKQK 57

[Close]

BLAST of CmoCh15G003990 vs. TAIR10
Match: AT4G26055.1 (AT4G26055.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNL 44
          M  KFGG  +PTGTPS+ WS VVVV+SLLAGAS+VHNIYKP+L
Sbjct: 1  MNNKFGGK-KPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDL 42

[Close]

BLAST of CmoCh15G003990 vs. TAIR10
Match: AT5G57080.1 (AT5G57080.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-08
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 8  GLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNL 44
          G  PTGTPS+  S +VVV+SLLAGAS+VHNIYKP+L
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDL 42

[Close]

BLAST of CmoCh15G003990 vs. NCBI nr
Match: gi|700196132|gb|KGN51309.1| (hypothetical protein Csa_5G517080 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 47/82 (57.32%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M +KFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVHNI+KPN                  
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPN------------------ 59

Query: 61 SMKVHLTLPPVDGVQATSKKDH 83
               LTLPP D  Q T+ K++
Sbjct: 61 -----LTLPPADSAQTTTNKEN 59

[Close]

BLAST of CmoCh15G003990 vs. NCBI nr
Match: gi|947052126|gb|KRH01655.1| (hypothetical protein GLYMA_18G290700 [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG +PTGTPS+ WS VVVV SLLAGAS+VHNIYKPN                  
Sbjct: 1  MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPN------------------ 57

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPPVDGV +T +K
Sbjct: 61 -----LTLPPVDGVDSTKQK 57

[Close]

BLAST of CmoCh15G003990 vs. NCBI nr
Match: gi|955386063|ref|XP_014626719.1| (PREDICTED: uncharacterized protein LOC106797182 [Glycine max])

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG +PTGTPS+ WS VVVV SLLAGAS+VHNIYKPN                  
Sbjct: 20 MNRKFGGGKQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPN------------------ 76

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPPVDGV +T +K
Sbjct: 80 -----LTLPPVDGVDSTKQK 76

[Close]

BLAST of CmoCh15G003990 vs. NCBI nr
Match: gi|920681779|gb|KOM28559.1| (hypothetical protein LR48_Vigan549s011400 [Vigna angularis])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 44/80 (55.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG  PTGTPS+ WS VV+V SLLAGAS+VHNIYKPN                  
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSCVVIVFSLLAGASVVHNIYKPN------------------ 57

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPPVDGV  T +K
Sbjct: 61 -----LTLPPVDGVDRTKQK 57

[Close]

BLAST of CmoCh15G003990 vs. NCBI nr
Match: gi|593331582|ref|XP_007139217.1| (hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 44/80 (55.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLKSIWYRLQLNLTMPATC 60
          M RKFGGG +PTGTPS+ WS VVVV SLLAGAS+VHNIYKPN                  
Sbjct: 1  MNRKFGGGRQPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPN------------------ 57

Query: 61 SMKVHLTLPPVDGVQATSKK 81
               LTLPP DGV  T +K
Sbjct: 61 -----LTLPPADGVNRTKQK 57

The following BLAST results are available for this feature:

BLAST of CmoCh15G003990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G003990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQX5_CUCSA	1.2e-15	57.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517080 PE=4 SV=1	[more]
I1N569_SOYBN	3.2e-13	56.25	Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1	[more]
K7MVD8_SOYBN	3.2e-13	56.25	Uncharacterized protein OS=Glycine max GN=GLYMA_18G290700 PE=4 SV=1	[more]
V7B431_PHAVU	1.6e-12	55.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G011200g PE=4 SV=1	[more]
A0A0L9TEH6_PHAAN	1.6e-12	55.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan549s011400 PE=4 SV=1	[more]

BLAST of CmoCh15G003990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26055.1	2.7e-11	74.42	unknown protein	[more]
AT5G57080.1	4.8e-08	72.22	unknown protein	[more]

BLAST of CmoCh15G003990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196132\|gb\|KGN51309.1\|	1.7e-15	57.32	hypothetical protein Csa_5G517080 [Cucumis sativus]	[more]
gi\|947052126\|gb\|KRH01655.1\|	4.7e-13	56.25	hypothetical protein GLYMA_18G290700 [Glycine max]	[more]
gi\|955386063\|ref\|XP_014626719.1\|	4.7e-13	56.25	PREDICTED: uncharacterized protein LOC106797182 [Glycine max]	[more]
gi\|920681779\|gb\|KOM28559.1\|	2.3e-12	55.00	hypothetical protein LR48_Vigan549s011400 [Vigna angularis]	[more]
gi\|593331582\|ref\|XP_007139217.1\|	2.3e-12	55.00	hypothetical protein PHAVU_008G011200g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027858	DUF4516

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G003990.1	CmoCh15G003990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027858	Protein of unknown function DUF4516	PFAM	PF14990	DUF4516	coord: 11..44 score: 2.4
None	No IPR available	PANTHER	PTHR28492	FAMILY NOT NAMED	coord: 2..43 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G003990	Cucsa.010790	Cucumber (Gy14) v1	cgycmoB0543
CmoCh15G003990	CmaCh15G003880	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G003990	CmaCh04G026430	Cucurbita maxima (Rimu)	cmacmoB692
CmoCh15G003990	Csa5G517080	Cucumber (Chinese Long) v2	cmocuB288
CmoCh15G003990	ClCG09G019790	Watermelon (Charleston Gray)	cmowcgB233
CmoCh15G003990	CSPI05G17710	Wild cucumber (PI 183967)	cmocpiB297
CmoCh15G003990	CsaV3_5G026630	Cucumber (Chinese Long) v3	cmocucB0349
CmoCh15G003990	Carg02350	Silver-seed gourd	carcmoB0362

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G003990	CmoCh04G027650	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G003990	Watermelon (97103) v1	cmowmB243
CmoCh15G003990	Cucurbita pepo (Zucchini)	cmocpeB266
CmoCh15G003990	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G003990	Cucurbita pepo (Zucchini)	cmocpeB277
CmoCh15G003990	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G003990	Bottle gourd (USVL1VR-Ls)	cmolsiB260
CmoCh15G003990	Bottle gourd (USVL1VR-Ls)	cmolsiB261
CmoCh15G003990	Bottle gourd (USVL1VR-Ls)	cmolsiB273
CmoCh15G003990	Cucumber (Gy14) v2	cgybcmoB462
CmoCh15G003990	Cucumber (Gy14) v2	cgybcmoB585
CmoCh15G003990	Melon (DHL92) v3.6.1	cmomedB271
CmoCh15G003990	Melon (DHL92) v3.6.1	cmomedB289
CmoCh15G003990	Melon (DHL92) v3.6.1	cmomedB310
CmoCh15G003990	Silver-seed gourd	carcmoB0916
CmoCh15G003990	Silver-seed gourd	carcmoB0936
CmoCh15G003990	Cucumber (Chinese Long) v3	cmocucB0335
CmoCh15G003990	Watermelon (97103) v2	cmowmbB284
CmoCh15G003990	Watermelon (97103) v2	cmowmbB305
CmoCh15G003990	Wax gourd	cmowgoB0374
CmoCh15G003990	Cucurbita moschata (Rifu)	cmocmoB252
CmoCh15G003990	Cucurbita moschata (Rifu)	cmocmoB258
CmoCh15G003990	Cucurbita moschata (Rifu)	cmocmoB259
CmoCh15G003990	Cucumber (Gy14) v1	cgycmoB0466
CmoCh15G003990	Cucurbita maxima (Rimu)	cmacmoB689
CmoCh15G003990	Wild cucumber (PI 183967)	cmocpiB304
CmoCh15G003990	Cucumber (Chinese Long) v2	cmocuB295
CmoCh15G003990	Melon (DHL92) v3.5.1	cmomeB239