CsaV3_7G010000 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G010000
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionMajor viral transcription factor
Locationchr7 : 5621176 .. 5622150 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATAATACAGTTTGTGATTTATTATCTAAAAATTAAAAAGAAAGTAAGAAAGATGTTTGAGTTCCAAGGCCAGCATTGAAGGCCTTAAACTTACCAATCCTCTTCTTCAGGAATGGAAAAACAAATTAGTTGAAAAACCTAAAAATGTTTAAGAAGATTTGCTAAATAAAGACGGTAGAAGGTTATGGCAGAAGACGTTAAAGAACAATTCACCCTCTTCTTTCATTTGTTTGCCTTATATTTCTCCTCCAATGAGTGCAAATCAAACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAATACAAACCCAGATTGCCTAAACCTCCAACCAGGTTGCAGAAGCAGGCGCCGGCCAGTCTTCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGCTAGTAACGACATTTGTTCCAAGGCGATTCTTCCTCTCCTATCGCCACTTCCTCTATCGCCACAGCCCTTGCCTGAAATCGACGGAAATAGAATATCTGCAAACGGAAATGCCGTAGACGGCGGCGGTGGTAATGGGGATCAAAGAGGAATAGGTTTTGTAGCTCCTGGTGGTTGGCAACATCCGGCAGTGGCAGCGACATTTCCTGATCCTTCTACGCTGTTTACTTTCTTTCAATCGCAATGCATGGTAAGCAGTAACACACCGTAAGAAGAAGATGGAGATTGTGGATCGATTCTCGCGTCTGATTATCTACGTAAATCCACCAATGTACATTATGATGTATGTGCGTGTGTGCGCGTGTGTGTTTGTTCATCAATTCCGTTAAGATCTCCATGAATACTTCCTCTGGTTTTAAGATTTCACACACTTCATCTTACTCATAATTTAACACCCTGCTTCTTCTTCTTCGTTTTCAATTTCTTCTCTATTCATTCATTCAATCAATTCAATTCATTTGTTGTAATTTGTTATCCATGTTCAAGTCTGAATCACGAATCTTATTTCGCC

mRNA sequence

ATGAGTGCAAATCAAACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAATACAAACCCAGATTGCCTAAACCTCCAACCAGGTTGCAGAAGCAGGCGCCGGCCAGTCTTCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGCTAGTAACGACATTTGTTCCAAGGCGATTCTTCCTCTCCTATCGCCACTTCCTCTATCGCCACAGCCCTTGCCTGAAATCGACGGAAATAGAATATCTGCAAACGGAAATGCCGTAGACGGCGGCGGTGGTAATGGGGATCAAAGAGGAATAGGTTTTGTAGCTCCTGGTGGTTGGCAACATCCGGCAGTGGCAGCGACATTTCCTGATCCTTCTACGCTGTTTACTTTCTTTCAATCGCAATGCATGGTAAGCAGTAACACACCGTAA

Coding sequence (CDS)

ATGAGTGCAAATCAAACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAATACAAACCCAGATTGCCTAAACCTCCAACCAGGTTGCAGAAGCAGGCGCCGGCCAGTCTTCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGCTAGTAACGACATTTGTTCCAAGGCGATTCTTCCTCTCCTATCGCCACTTCCTCTATCGCCACAGCCCTTGCCTGAAATCGACGGAAATAGAATATCTGCAAACGGAAATGCCGTAGACGGCGGCGGTGGTAATGGGGATCAAAGAGGAATAGGTTTTGTAGCTCCTGGTGGTTGGCAACATCCGGCAGTGGCAGCGACATTTCCTGATCCTTCTACGCTGTTTACTTTCTTTCAATCGCAATGCATGGTAAGCAGTAACACACCGTAA

Protein sequence

MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMVSSNTP
BLAST of CsaV3_7G010000 vs. NCBI nr
Match: XP_011657141.1 (PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus] >KGN47125.1 hypothetical protein Csa_6G188670 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 7.4e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 141
           DPSTLFTFFQSQCMVSSNTP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

BLAST of CsaV3_7G010000 vs. NCBI nr
Match: XP_023512816.1 (uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = 0

Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           M+ANQ+ VVDFLR +M+NE   R+PKPPTRLQKQAPA L+LDQLSSVSMSS   +I SK 
Sbjct: 1   MNANQSAVVDFLRAAMDNERGGRIPKPPTRLQKQAPAGLYLDQLSSVSMSSVGTEISSKT 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           +LPLLSPLP SPQP  E +GNR+  NGN  D  GGNGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  VLPLLSPLPSSPQPFSETEGNRMLTNGNGAD-SGGNGDQRGIVFASPGGWQHPAVAATYA 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 141
           DPSTLFTFFQS+C+++SNTP
Sbjct: 121 DPSTLFTFFQSKCIITSNTP 139

BLAST of CsaV3_7G010000 vs. NCBI nr
Match: XP_022148421.1 (uncharacterized protein LOC111017071 [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 1   MSANQTVVVDFLRGSMENEY--KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICS 60
           M+ANQ+ V+DFLR SME E+  K R+PKPPTRLQKQAPASLHLDQ+SS SM+    +  S
Sbjct: 1   MNANQSAVIDFLRASMEKEHKAKSRIPKPPTRLQKQAPASLHLDQVSSTSMAPGGAETSS 60

Query: 61  KAILPLLSPLPLSPQPLPEID---GNRIS-ANGNAVDGGGGNGDQRG 102
           KAILPLLSPLPLSPQP PE +    NR+S AN NAVDGG   GDQRG
Sbjct: 61  KAILPLLSPLPLSPQPWPETEENNTNRVSAANENAVDGG---GDQRG 104

BLAST of CsaV3_7G010000 vs. NCBI nr
Match: XP_015874007.1 (uncharacterized protein LOC107411018 [Ziziphus jujuba])

HSP 1 Score: 96.3 bits (238), Expect = 8.9e-17
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 0

Query: 26  KPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEIDGNR--- 85
           KPPTRLQK+APASL LDQ+ + + + + N+  SKAI PLLSPL LSPQPLPE+   R   
Sbjct: 14  KPPTRLQKKAPASLKLDQVPTSAANDSFNE-TSKAI-PLLSPLVLSPQPLPEMLEKRRFG 73

Query: 86  ISANGNAVDGGGGNGDQRGIGFVAPG-GWQHPAVAATFPDPSTLFTFFQSQCMV 136
            +A+ + V+      D+R      P  GWQHPAV  TF DPS+LF FFQSQC++
Sbjct: 74  CAADQHDVE------DKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVI 119

BLAST of CsaV3_7G010000 vs. NCBI nr
Match: XP_018855192.1 (PREDICTED: uncharacterized protein LOC109017360 [Juglans regia])

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 19  EYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEI 78
           E KP++ KPPTRLQK APASL LD+ +     SA +    KAI P LSPL LSPQPLPE 
Sbjct: 2   EAKPKVGKPPTRLQKHAPASLQLDKAAPAVDPSAVSGETPKAI-PFLSPLVLSPQPLPET 61

Query: 79  DGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 136
              R   +G+  D    NG++     ++PGGWQHPA A    DP+ L T FQS+C++
Sbjct: 62  VEKRSGESGS--DDQKANGEEEKSEVLSPGGWQHPA-APALADPAALCTSFQSKCLL 114

BLAST of CsaV3_7G010000 vs. TAIR10
Match: AT1G07473.1 (unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0

Query: 21 KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQP 75
          K   P+ PTRLQKQAP +LHL  +        S+D+     +PLLSPL +SP P
Sbjct: 10 KSESPRSPTRLQKQAPTALHLGLVPENPFLQQSSDVVGTTAIPLLSPLFVSPSP 63

BLAST of CsaV3_7G010000 vs. TAIR10
Match: AT1G07476.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 8.1e-04
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0

Query: 21  KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSP 73
           K   P+ PTRLQ+QAPA+L+L ++        S D  + A +PLLSPL +SP
Sbjct: 53  KSESPRLPTRLQRQAPAALNLGRVPENPFLQQSGDEVAGAPIPLLSPLFVSP 104

BLAST of CsaV3_7G010000 vs. TrEMBL
Match: tr|A0A0A0KBQ7|A0A0A0KBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.9e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 141
           DPSTLFTFFQSQCMVSSNTP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

BLAST of CsaV3_7G010000 vs. TrEMBL
Match: tr|A0A2I4HGI9|A0A2I4HGI9_9ROSI (uncharacterized protein LOC109017360 OS=Juglans regia OX=51240 GN=LOC109017360 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 19  EYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEI 78
           E KP++ KPPTRLQK APASL LD+ +     SA +    KAI P LSPL LSPQPLPE 
Sbjct: 2   EAKPKVGKPPTRLQKHAPASLQLDKAAPAVDPSAVSGETPKAI-PFLSPLVLSPQPLPET 61

Query: 79  DGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 136
              R   +G+  D    NG++     ++PGGWQHPA A    DP+ L T FQS+C++
Sbjct: 62  VEKRSGESGS--DDQKANGEEEKSEVLSPGGWQHPA-APALADPAALCTSFQSKCLL 114

BLAST of CsaV3_7G010000 vs. TrEMBL
Match: tr|A0A2I4HTA9|A0A2I4HTA9_9ROSI (uncharacterized protein LOC108980070 OS=Juglans regia OX=51240 GN=LOC109021244 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 56/122 (45.90%), Postives = 72/122 (59.02%), Query Frame = 0

Query: 17  ENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLP 76
           + E K ++ KPPTRLQKQAPASL LD+++    +S +        +P LSPL LSPQPLP
Sbjct: 10  QKEGKAKVGKPPTRLQKQAPASLQLDKVAVYGETSKA--------IPFLSPLILSPQPLP 69

Query: 77  EIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMVS 136
           E    R   +G+  +    NG +R       GGWQHPAV   F +P  LFT FQSQC++ 
Sbjct: 70  ETLEIRSGKSGSNEE--EDNGAKRSKALPPGGGWQHPAV-PVFTEPEALFTCFQSQCLLV 120

Query: 137 SN 139
            N
Sbjct: 130 DN 120

BLAST of CsaV3_7G010000 vs. TrEMBL
Match: tr|A0A2R6P663|A0A2R6P663_ACTCH (Major viral transcription factor OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc31766 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 56/124 (45.16%), Postives = 70/124 (56.45%), Query Frame = 0

Query: 21  KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEIDG 80
           K  + K PTRLQK AP +L L Q++        N+  S   +PLLSPL LSPQPL E + 
Sbjct: 12  KTPIAKSPTRLQKYAPPALQLGQVT-------GNEAASCYTIPLLSPLILSPQPLEEREE 71

Query: 81  NRISANGNAVDGGG-GNGDQRG--------IGFVAPGGWQHPAVAATFPDPSTLFTFFQS 136
            R+      V G G GNG+ +G        +  +  G WQHPAV A FPD S LF+FFQS
Sbjct: 72  RRL------VGGAGVGNGELQGTHDNNNTIMSALPSGDWQHPAVEAAFPDTSALFSFFQS 122

BLAST of CsaV3_7G010000 vs. TrEMBL
Match: tr|A0A068UKW1|A0A068UKW1_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00028298001 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 55/115 (47.83%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 26  KPPTRLQKQAPASLHLDQLSSVS----MSSASNDICSKAILPLLSPLP-LSPQPLPEIDG 85
           KPPTRLQKQAPA+LHLD + + S     S    D  S A +PLLSP+P LSP      + 
Sbjct: 19  KPPTRLQKQAPAALHLDGIRNASKVFPCSDPPEDASSLAAIPLLSPIPLLSPSREAPDES 78

Query: 86  NRISANGNAVDGGGG-NGDQRGIG-FVAPGGWQHPAVAATFPDPSTLFTFFQSQC 134
           +     GN   GGG    +Q+  G   A GGWQHPAV     +PS LF  FQSQC
Sbjct: 79  SGDGGCGNGASGGGQCRIEQQNFGDLSASGGWQHPAVTTPLTEPSALFAMFQSQC 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011657141.17.4e-72100.00PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus] >KGN47125.1 hy... [more]
XP_023512816.12.0e-4871.43uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo][more]
XP_022148421.13.1e-2568.22uncharacterized protein LOC111017071 [Momordica charantia][more]
XP_015874007.18.9e-1753.51uncharacterized protein LOC107411018 [Ziziphus jujuba][more]
XP_018855192.12.2e-1549.57PREDICTED: uncharacterized protein LOC109017360 [Juglans regia][more]
Match NameE-valueIdentityDescription
AT1G07473.11.1e-0546.30unknown protein[more]
AT1G07476.18.1e-0446.15unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KBQ7|A0A0A0KBQ7_CUCSA4.9e-72100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1[more]
tr|A0A2I4HGI9|A0A2I4HGI9_9ROSI1.5e-1549.57uncharacterized protein LOC109017360 OS=Juglans regia OX=51240 GN=LOC109017360 P... [more]
tr|A0A2I4HTA9|A0A2I4HTA9_9ROSI2.7e-1445.90uncharacterized protein LOC108980070 OS=Juglans regia OX=51240 GN=LOC109021244 P... [more]
tr|A0A2R6P663|A0A2R6P663_ACTCH3.0e-1345.16Major viral transcription factor OS=Actinidia chinensis var. chinensis OX=159084... [more]
tr|A0A068UKW1|A0A068UKW1_COFCA4.0e-1347.83Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00028298001 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G010000.1CsaV3_7G010000.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..104
NoneNo IPR availablePANTHERPTHR33912FAMILY NOT NAMEDcoord: 23..136
NoneNo IPR availablePANTHERPTHR33912:SF2F22G5.17coord: 23..136

The following gene(s) are paralogous to this gene:

None