CmoCh02G007800 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G007800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr02 : 4852225 .. 4852641 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA

mRNA sequence

ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA

Coding sequence (CDS)

ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA

Homology

[Close]

BLAST of CmoCh02G007800 vs. TrEMBL
Match: A0A0A0KBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.7e-51
Identity = 107/140 (76.43%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKA 60
           M+ANQ  VVDF R +ME E+K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S DI SKA
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  VLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQRGMCFAPPGGWQHPAVATTFA 120
           +LPLLSPLP SPQP PE +GNR +ANGN VD  GG GDQRG+ F  PGGWQHPAVA TF 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCIVNSKTP 139
           DPSTLFTFFQSQC+V+S TP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of CmoCh02G007800 vs. TrEMBL
Match: A0A068UKW1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028298001 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 55/120 (45.83%), Postives = 64/120 (53.33%), Query Frame = 1


Query: 26  KPPTRLQKQAPASLHLDQLTSVSM----SSGSADISSKAVLPLLSPLPS-SPQPFPETEG 85
           KPPTRLQKQAPA+LHLD + + S     S    D SS A +PLLSP+P  SP      E 
Sbjct: 19  KPPTRLQKQAPAALHLDGIRNASKVFPCSDPPEDASSLAAIPLLSPIPLLSPSREAPDES 78

Query: 86  NRRAANGNTVDGG---------YGDQRGMCFAPPGGWQHPAVATTFADPSTLFTFFQSQC 132
           +     GN   GG         +GD      +  GGWQHPAV T   +PS LF  FQSQC
Sbjct: 79  SGDGGCGNGASGGGQCRIEQQNFGD-----LSASGGWQHPAVTTPLTEPSALFAMFQSQC 133

[Close]

BLAST of CmoCh02G007800 vs. TrEMBL
Match: B9RRF3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1189240 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.2e-12
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 21  KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFP-ETE 80
           K+++ KPPTRLQK+AP+SL ++  T       ++  S    +PLLSPL  SP P   E E
Sbjct: 20  KTKVGKPPTRLQKKAPSSLQVNYSTIYPRMPSTS--SPHTPIPLLSPLIVSPPPLSQEAE 79

Query: 81  GNRRAANGNTVDGGYGDQRGMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIV 134
             R       +D G  D+R +    PGGWQHPAVA  + +PS+LF  FQS+C++
Sbjct: 80  EFRFPLICGEIDKGSNDKRIVSPILPGGWQHPAVANGYMEPSSLFNIFQSKCVL 131

[Close]

BLAST of CmoCh02G007800 vs. TrEMBL
Match: B9HPD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04130g PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 23  RLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFP-ETEGN 82
           ++ KPPTRLQKQAP +L LDQL++  + +  A       +PLLSPL  SP P P E E  
Sbjct: 97  KVGKPPTRLQKQAPRALDLDQLSTPLLPASQAS-PPPTPIPLLSPLSVSPPPLPSEAEEF 156

Query: 83  RRAANGNTVDGGYGDQRGMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIV 134
                    D G  D     ++    WQHPAVA+ + +PS+LFTFFQS+C++
Sbjct: 157 TFPVICGDNDKGREDDVHDAYSEARVWQHPAVASGYIEPSSLFTFFQSKCLL 207

[Close]

BLAST of CmoCh02G007800 vs. TrEMBL
Match: W9RU96_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025298 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-11
Identity = 52/124 (41.94%), Postives = 73/124 (58.87%), Query Frame = 1


Query: 16  MEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGS---ADISSKAVLPLLSPLPSSP 75
           +  E K++  KPPTRLQ QAPASL LDQ+T  + +  +   A  +S+A+ PLLSPL  SP
Sbjct: 9   LRTESKAKAGKPPTRLQAQAPASLRLDQMTFSAPAPANVLPAGDTSRAI-PLLSPLVLSP 68

Query: 76  QPFPETEGNRRAANGNT---VDGGYGDQRGMCFAPPGGWQHPAVATTFADPSTLFTFFQS 134
           Q   ++       +  +    + G  D+     +   GWQH   A TFADPS+LF+FFQS
Sbjct: 69  QLLQDSTEKLTCGHDQSNEHQEEGTADKTNNGGSGESGWQHQE-AATFADPSSLFSFFQS 128

[Close]

BLAST of CmoCh02G007800 vs. NCBI nr
Match: gi|778713845|ref|XP_011657141.1| (PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 8.1e-51
Identity = 107/140 (76.43%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKA 60
           M+ANQ  VVDF R +ME E+K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S DI SKA
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  VLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQRGMCFAPPGGWQHPAVATTFA 120
           +LPLLSPLP SPQP PE +GNR +ANGN VD  GG GDQRG+ F  PGGWQHPAVA TF 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCIVNSKTP 139
           DPSTLFTFFQSQC+V+S TP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of CmoCh02G007800 vs. NCBI nr
Match: gi|659128181|ref|XP_008464087.1| (PREDICTED: uncharacterized protein LOC103502058 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.6e-49
Identity = 106/140 (75.71%), Postives = 114/140 (81.43%), Query Frame = 1


Query: 1   MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKA 60
           MNANQ  VVDF R +ME E K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S D  SKA
Sbjct: 1   MNANQTVVVDFLRGSMENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKA 60

Query: 61  VLPLLSPLPSSPQPFPETEGNRRAANGNTVD--GGYGDQRGMCFAPPGGWQHPAVATTFA 120
           +LPLLSPLP SPQP PE +GNR +A GN V+  GG GDQRG+ F  PGGWQHPAVA TF 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCIVNSKTP 139
           DPSTLFTFFQSQCIV+S TP
Sbjct: 121 DPSTLFTFFQSQCIVSSNTP 140

[Close]

BLAST of CmoCh02G007800 vs. NCBI nr
Match: gi|1009115025|ref|XP_015874007.1| (PREDICTED: uncharacterized protein LOC107411018 [Ziziphus jujuba])

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 1


Query: 26  KPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRR-- 85
           KPPTRLQK+APASL LDQ+ + S ++ S + +SKA+ PLLSPL  SPQP PE    RR  
Sbjct: 14  KPPTRLQKKAPASLKLDQVPT-SAANDSFNETSKAI-PLLSPLVLSPQPLPEMLEKRRFG 73

Query: 86  -AANGNTVDGGYGDQRGMCFA-PPGGWQHPAVATTFADPSTLFTFFQSQCIV 134
            AA+ + V+    D+R      P  GWQHPAV TTF DPS+LF FFQSQC++
Sbjct: 74  CAADQHDVE----DKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVI 119

[Close]

BLAST of CmoCh02G007800 vs. NCBI nr
Match: gi|661887321|emb|CDP09101.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-13
Identity = 55/120 (45.83%), Postives = 64/120 (53.33%), Query Frame = 1


Query: 26  KPPTRLQKQAPASLHLDQLTSVSM----SSGSADISSKAVLPLLSPLPS-SPQPFPETEG 85
           KPPTRLQKQAPA+LHLD + + S     S    D SS A +PLLSP+P  SP      E 
Sbjct: 19  KPPTRLQKQAPAALHLDGIRNASKVFPCSDPPEDASSLAAIPLLSPIPLLSPSREAPDES 78

Query: 86  NRRAANGNTVDGG---------YGDQRGMCFAPPGGWQHPAVATTFADPSTLFTFFQSQC 132
           +     GN   GG         +GD      +  GGWQHPAV T   +PS LF  FQSQC
Sbjct: 79  SGDGGCGNGASGGGQCRIEQQNFGD-----LSASGGWQHPAVTTPLTEPSALFAMFQSQC 133

[Close]

BLAST of CmoCh02G007800 vs. NCBI nr
Match: gi|658018975|ref|XP_008344835.1| (PREDICTED: uncharacterized protein LOC103407729 [Malus domestica])

HSP 1 Score: 82.0 bits (201), Expect = 8.8e-13
Identity = 51/117 (43.59%), Postives = 68/117 (58.12%), Query Frame = 1


Query: 21  KSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEG 80
           K+   K PTRLQ++APASLHLD++ S + ++ S++  +   +PLLSP+   P P P    
Sbjct: 10  KADTGKAPTRLQQRAPASLHLDEIASTASTNPSSNDDATMTIPLLSPV-LIPSPHPVAVA 69

Query: 81  NRRAANGNTVDGGYGDQRGMCFAPP----GGWQHPAVATTFADPSTLFTFFQSQCIV 134
             +A          GDQ     APP    GGWQHPAV   F DPSTLF  FQ+QC++
Sbjct: 70  MEKA----------GDQNVSSIAPPFPAAGGWQHPAVG-PFVDPSTLFAMFQTQCMI 114

The following BLAST results are available for this feature:

BLAST of CmoCh02G007800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G007800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBQ7_CUCSA	5.7e-51	76.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188670 PE=4 SV=1	[more]
A0A068UKW1_COFCA	2.7e-13	45.83	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028298001 PE=4 SV=1	[more]
B9RRF3_RICCO	5.2e-12	42.98	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1189240 PE=4 SV=1	[more]
B9HPD2_POPTR	1.2e-11	43.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04130g PE=4 SV=1	[more]
W9RU96_9ROSA	5.7e-11	41.94	Uncharacterized protein OS=Morus notabilis GN=L484_025298 PE=4 SV=1	[more]

BLAST of CmoCh02G007800 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh02G007800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778713845\|ref\|XP_011657141.1\|	8.1e-51	76.43	PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus]	[more]
gi\|659128181\|ref\|XP_008464087.1\|	2.6e-49	75.71	PREDICTED: uncharacterized protein LOC103502058 [Cucumis melo]	[more]
gi\|1009115025\|ref\|XP_015874007.1\|	9.1e-18	55.36	PREDICTED: uncharacterized protein LOC107411018 [Ziziphus jujuba]	[more]
gi\|661887321\|emb\|CDP09101.1\|	3.9e-13	45.83	unnamed protein product [Coffea canephora]	[more]
gi\|658018975\|ref\|XP_008344835.1\|	8.8e-13	43.59	PREDICTED: uncharacterized protein LOC103407729 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G007800.1	CmoCh02G007800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33912	FAMILY NOT NAMED	coord: 11..132 score: 2.4
None	No IPR available	PANTHER	PTHR33912:SF1	F22G5.17	coord: 11..132 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G007800	CmaCh20G003810	Cucurbita maxima (Rimu)	cmacmoB553
CmoCh02G007800	CmaCh02G007800	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G007800	Cla013327	Watermelon (97103) v1	cmowmB577
CmoCh02G007800	Csa6G188670	Cucumber (Chinese Long) v2	cmocuB609
CmoCh02G007800	MELO3C025891	Melon (DHL92) v3.5.1	cmomeB536
CmoCh02G007800	ClCG02G019900	Watermelon (Charleston Gray)	cmowcgB525
CmoCh02G007800	CSPI06G14230	Wild cucumber (PI 183967)	cmocpiB615
CmoCh02G007800	Lsi10G014000	Bottle gourd (USVL1VR-Ls)	cmolsiB532
CmoCh02G007800	Cp4.1LG16g06130	Cucurbita pepo (Zucchini)	cmocpeB574
CmoCh02G007800	Cp4.1LG05g09250	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G007800	MELO3C025891.2	Melon (DHL92) v3.6.1	cmomedB614
CmoCh02G007800	CsaV3_7G010000	Cucumber (Chinese Long) v3	cmocucB0756
CmoCh02G007800	Cla97C02G045900	Watermelon (97103) v2	cmowmbB588
CmoCh02G007800	Bhi10G000594	Wax gourd	cmowgoB0746
CmoCh02G007800	CsGy6G014070	Cucumber (Gy14) v2	cgybcmoB788
CmoCh02G007800	Carg26587	Silver-seed gourd	carcmoB1226
CmoCh02G007800	Carg03336	Silver-seed gourd	carcmoB0467

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G007800	CmoCh20G004130	Cucurbita moschata (Rifu)	cmocmoB403

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G007800	Cucurbita moschata (Rifu)	cmocmoB180
CmoCh02G007800	Cucurbita moschata (Rifu)	cmocmoB436
CmoCh02G007800	Cucumber (Gy14) v1	cgycmoB0389
CmoCh02G007800	Cucurbita maxima (Rimu)	cmacmoB232
CmoCh02G007800	Cucurbita maxima (Rimu)	cmacmoB821
CmoCh02G007800	Cucurbita pepo (Zucchini)	cmocpeB582
CmoCh02G007800	Cucurbita pepo (Zucchini)	cmocpeB586
CmoCh02G007800	Cucurbita pepo (Zucchini)	cmocpeB588
CmoCh02G007800	Cucurbita pepo (Zucchini)	cmocpeB600
CmoCh02G007800	Cucumber (Gy14) v2	cgybcmoB112
CmoCh02G007800	Silver-seed gourd	carcmoB0121
CmoCh02G007800	Silver-seed gourd	carcmoB0219
CmoCh02G007800	Silver-seed gourd	carcmoB0519
CmoCh02G007800	Silver-seed gourd	carcmoB1339
CmoCh02G007800	Cucumber (Chinese Long) v3	cmocucB0729