CmoCh20G004130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G004130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr20 : 1972964 .. 1973383 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAAATCAATCTGCTGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGCCGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGCCTTTTCCTGATACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAACATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA

mRNA sequence

ATGAATGCAAATCAATCTGCTGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGCCGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGCCTTTTCCTGATACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAACATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA

Coding sequence (CDS)

ATGAATGCAAATCAATCTGCTGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGCCGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGCCTTTTCCTGATACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAACATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA

Homology

[Close]

BLAST of CmoCh20G004130 vs. TrEMBL
Match: A0A0A0KBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.7e-48
Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT 60
           M+ANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +  SK 
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  VLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQRGIVFASPGGWQHPAVAATYA 120
           +LPLLSPLP SPQP P+ +GNR+ ANGN V+  GGNGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSKCIITSSTP 140
           DPSTLFTFFQS+C+++S+TP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of CmoCh20G004130 vs. TrEMBL
Match: B9HPD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04130g PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-15
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNR 82
           ++ KPPTRLQKQAP  L LDQLS+  +P+    +   T +PLLSPL  SP P P      
Sbjct: 97  KVGKPPTRLQKQAPRALDLDQLSTPLLPA-SQASPPPTPIPLLSPLSVSPPPLPSEAEEF 156

Query: 83  MLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCII 135
                 G N  G  D     ++    WQHPAVA+ Y +PS+LFTFFQSKC++
Sbjct: 157 TFPVICGDNDKGREDDVHDAYSEARVWQHPAVASGYIEPSSLFTFFQSKCLL 207

[Close]

BLAST of CmoCh20G004130 vs. TrEMBL
Match: B9RRF3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1189240 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 1


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNR 82
           ++ KPPTRLQK+AP+ L ++   S   P + + +   T +PLLSPL  SP P        
Sbjct: 22  KVGKPPTRLQKKAPSSLQVNY--STIYPRMPSTSSPHTPIPLLSPLIVSPPPLSQEAEEF 81

Query: 83  MLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITS 137
                 G    G+ D+R +    PGGWQHPAVA  Y +PS+LF  FQSKC++ +
Sbjct: 82  RFPLICGEIDKGSNDKRIVSPILPGGWQHPAVANGYMEPSSLFNIFQSKCVLVN 133

[Close]

BLAST of CmoCh20G004130 vs. TrEMBL
Match: A0A068UKW1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028298001 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-10
Identity = 48/119 (40.34%), Postives = 62/119 (52.10%), Query Frame = 1


Query: 26  KPPTRLQKQAPAGLYLDQLSSVSM----PSVGTETYSKTVLPLLSPLPS-SPQPFPDTEG 85
           KPPTRLQKQAPA L+LD + + S          +  S   +PLLSP+P  SP      E 
Sbjct: 19  KPPTRLQKQAPAALHLDGIRNASKVFPCSDPPEDASSLAAIPLLSPIPLLSPSREAPDES 78

Query: 86  NRMLANGNGVNSGGN---GDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITS 137
           +     GNG + GG      Q     ++ GGWQHPAV     +PS LF  FQS+C + +
Sbjct: 79  SGDGGCGNGASGGGQCRIEQQNFGDLSASGGWQHPAVTTPLTEPSALFAMFQSQCSLVN 137

[Close]

BLAST of CmoCh20G004130 vs. TrEMBL
Match: W9RU96_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025298 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-10
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 1


Query: 26  KPPTRLQKQAPAGLYLDQL--SSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDT----- 85
           KPPTRLQ QAPA L LDQ+  S+ +  +V     +   +PLLSPL  SPQ   D+     
Sbjct: 19  KPPTRLQAQAPASLRLDQMTFSAPAPANVLPAGDTSRAIPLLSPLVLSPQLLQDSTEKLT 78

Query: 86  ----EGNRMLANGNG--VNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKC 137
               + N     G     N+GG+G+          GWQH   AAT+ADPS+LF+FFQS+C
Sbjct: 79  CGHDQSNEHQEEGTADKTNNGGSGES---------GWQHQE-AATFADPSSLFSFFQSQC 132

[Close]

BLAST of CmoCh20G004130 vs. NCBI nr
Match: gi|659128181|ref|XP_008464087.1| (PREDICTED: uncharacterized protein LOC103502058 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-49
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT 60
           MNANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +TYSK 
Sbjct: 1   MNANQTVVVDFLRGSMENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKA 60

Query: 61  VLPLLSPLPSSPQPFPDTEGNRMLANGNGV-NSGGNGDQRGIVFASPGGWQHPAVAATYA 120
           +LPLLSPLP SPQP P+ +GNR+ A GN V   GGNGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSKCIITSSTP 140
           DPSTLFTFFQS+CI++S+TP
Sbjct: 121 DPSTLFTFFQSQCIVSSNTP 140

[Close]

BLAST of CmoCh20G004130 vs. NCBI nr
Match: gi|778713845|ref|XP_011657141.1| (PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT 60
           M+ANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +  SK 
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  VLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQRGIVFASPGGWQHPAVAATYA 120
           +LPLLSPLP SPQP P+ +GNR+ ANGN V+  GGNGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSKCIITSSTP 140
           DPSTLFTFFQS+C+++S+TP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of CmoCh20G004130 vs. NCBI nr
Match: gi|224106405|ref|XP_002314155.1| (hypothetical protein POPTR_0009s04130g [Populus trichocarpa])

HSP 1 Score: 89.0 bits (219), Expect = 7.2e-15
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNR 82
           ++ KPPTRLQKQAP  L LDQLS+  +P+    +   T +PLLSPL  SP P P      
Sbjct: 97  KVGKPPTRLQKQAPRALDLDQLSTPLLPA-SQASPPPTPIPLLSPLSVSPPPLPSEAEEF 156

Query: 83  MLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCII 135
                 G N  G  D     ++    WQHPAVA+ Y +PS+LFTFFQSKC++
Sbjct: 157 TFPVICGDNDKGREDDVHDAYSEARVWQHPAVASGYIEPSSLFTFFQSKCLL 207

[Close]

BLAST of CmoCh20G004130 vs. NCBI nr
Match: gi|1009115025|ref|XP_015874007.1| (PREDICTED: uncharacterized protein LOC107411018 [Ziziphus jujuba])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 52/114 (45.61%), Postives = 69/114 (60.53%), Query Frame = 1


Query: 26  KPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT--VLPLLSPLPSSPQPFPDTEGNRM 85
           KPPTRLQK+APA L LDQ+ +    S   +++++T   +PLLSPL  SPQP P+    R 
Sbjct: 14  KPPTRLQKKAPASLKLDQVPT----SAANDSFNETSKAIPLLSPLVLSPQPLPEMLEKRR 73

Query: 86  LANGNGVNSGGNGDQRGIVFASPG-GWQHPAVAATYADPSTLFTFFQSKCIITS 137
              G   +     D+R      P  GWQHPAV  T+ DPS+LF FFQS+C+I +
Sbjct: 74  F--GCAADQHDVEDKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVIVN 121

[Close]

BLAST of CmoCh20G004130 vs. NCBI nr
Match: gi|743865861|ref|XP_011032299.1| (PREDICTED: uncharacterized protein LOC105131161 [Populus euphratica])

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-14
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNR 82
           ++ KPPTRLQKQAP  L LDQLS+  +P+    +   T +PLLSPL  SP P P      
Sbjct: 22  KVRKPPTRLQKQAPRALDLDQLSTPLLPA-SQASPPPTPIPLLSPLSVSPPPLPSEAEEF 81

Query: 83  MLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCI 134
                 G N  G  D    V++    WQHPAVA+ Y +PS+ FT F+SKC+
Sbjct: 82  TFPVTCGDNDKGKEDDVHDVYSEARVWQHPAVASGYIEPSSFFTLFRSKCL 131

The following BLAST results are available for this feature:

BLAST of CmoCh20G004130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBQ7_CUCSA	7.7e-48	69.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188670 PE=4 SV=1	[more]
B9HPD2_POPTR	5.0e-15	46.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04130g PE=4 SV=1	[more]
B9RRF3_RICCO	3.1e-12	41.23	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1189240 PE=4 SV=1	[more]
A0A068UKW1_COFCA	4.9e-10	40.34	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028298001 PE=4 SV=1	[more]
W9RU96_9ROSA	4.9e-10	41.94	Uncharacterized protein OS=Morus notabilis GN=L484_025298 PE=4 SV=1	[more]

BLAST of CmoCh20G004130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh20G004130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128181\|ref\|XP_008464087.1\|	1.5e-49	71.43	PREDICTED: uncharacterized protein LOC103502058 [Cucumis melo]	[more]
gi\|778713845\|ref\|XP_011657141.1\|	1.1e-47	69.29	PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus]	[more]
gi\|224106405\|ref\|XP_002314155.1\|	7.2e-15	46.43	hypothetical protein POPTR_0009s04130g [Populus trichocarpa]	[more]
gi\|1009115025\|ref\|XP_015874007.1\|	4.7e-14	45.61	PREDICTED: uncharacterized protein LOC107411018 [Ziziphus jujuba]	[more]
gi\|743865861\|ref\|XP_011032299.1\|	8.0e-14	45.05	PREDICTED: uncharacterized protein LOC105131161 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G004130.1	CmoCh20G004130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33912	FAMILY NOT NAMED	coord: 11..134 score: 4.6
None	No IPR available	PANTHER	PTHR33912:SF1	F22G5.17	coord: 11..134 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G004130	CmaCh20G003810	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G004130	CmaCh02G007800	Cucurbita maxima (Rimu)	cmacmoB605
CmoCh20G004130	Cla013327	Watermelon (97103) v1	cmowmB513
CmoCh20G004130	Csa6G188670	Cucumber (Chinese Long) v2	cmocuB543
CmoCh20G004130	MELO3C025891	Melon (DHL92) v3.5.1	cmomeB494
CmoCh20G004130	ClCG02G019900	Watermelon (Charleston Gray)	cmowcgB479
CmoCh20G004130	CSPI06G14230	Wild cucumber (PI 183967)	cmocpiB548
CmoCh20G004130	Lsi10G014000	Bottle gourd (USVL1VR-Ls)	cmolsiB490
CmoCh20G004130	Cp4.1LG16g06130	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G004130	Cp4.1LG05g09250	Cucurbita pepo (Zucchini)	cmocpeB533
CmoCh20G004130	MELO3C025891.2	Melon (DHL92) v3.6.1	cmomedB567
CmoCh20G004130	CsaV3_7G010000	Cucumber (Chinese Long) v3	cmocucB0675
CmoCh20G004130	Cla97C02G045900	Watermelon (97103) v2	cmowmbB545
CmoCh20G004130	Bhi10G000594	Wax gourd	cmowgoB0686
CmoCh20G004130	CsGy6G014070	Cucumber (Gy14) v2	cgybcmoB768
CmoCh20G004130	Carg26587	Silver-seed gourd	carcmoB1225
CmoCh20G004130	Carg03336	Silver-seed gourd	carcmoB0464

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G004130	CmoCh02G007800	Cucurbita moschata (Rifu)	cmocmoB403

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G004130	Cucurbita moschata (Rifu)	cmocmoB422
CmoCh20G004130	Cucumber (Gy14) v1	cgycmoB0386
CmoCh20G004130	Cucurbita maxima (Rimu)	cmacmoB818
CmoCh20G004130	Cucurbita pepo (Zucchini)	cmocpeB522
CmoCh20G004130	Cucurbita pepo (Zucchini)	cmocpeB541
CmoCh20G004130	Cucumber (Gy14) v2	cgybcmoB495
CmoCh20G004130	Silver-seed gourd	carcmoB0218
CmoCh20G004130	Silver-seed gourd	carcmoB1338
CmoCh20G004130	Cucumber (Chinese Long) v3	cmocucB0650