Carg03336 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03336
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Major viral transcription factor
Location	Cucurbita_argyrosperma_scaffold_005 : 1300710 .. 1301129 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAAATCAATCTGCCGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGCCGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAACATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA

mRNA sequence

ATGAATGCAAATCAATCTGCCGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGCCGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAACATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA

Coding sequence (CDS)

ATGAATGCAAATCAATCTGCCGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGCCGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAACATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA

Protein sequence

MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPETEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

Homology

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BLAST of Carg03336 vs. NCBI nr
Match: XP_023512816.1 (uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.8 bits (660), Expect = 1.0e-65
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT 60
           MNANQSAVVDFLRAAMDN+RGGRIPKPPTRLQKQAPAGLYLDQLSSVSM SVGTE  SKT
Sbjct: 1   MNANQSAVVDFLRAAMDNERGGRIPKPPTRLQKQAPAGLYLDQLSSVSMSSVGTEISSKT 60

Query: 61  VLPLLSPLPSSPQPFPETEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYAD 120
           VLPLLSPLPSSPQPF ETEGNRML NGNG +SGGNGDQRGIVFASPGGWQHPAVAATYAD
Sbjct: 61  VLPLLSPLPSSPQPFSETEGNRMLTNGNGADSGGNGDQRGIVFASPGGWQHPAVAATYAD 120

Query: 121 PSTLFTFFQSKCIITSSTP 140
           PSTLFTFFQSKCIITS+TP
Sbjct: 121 PSTLFTFFQSKCIITSNTP 139

[Close]

BLAST of Carg03336 vs. NCBI nr
Match: XP_011657141.1 (PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus] >KGN47125.1 hypothetical protein Csa_6G188670 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 9.7e-48
Identity = 98/140 (70.00%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT 60
           M+ANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +  SK 
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  VLPLLSPLPSSPQPFPETEGNRMLANGNGVN-SGGNGDQRGIVFASPGGWQHPAVAATYA 120
           +LPLLSPLP SPQP PE +GNR+ ANGN V+  GGNGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSKCIITSSTP 140
           DPSTLFTFFQS+C+++S+TP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of Carg03336 vs. NCBI nr
Match: XP_022148421.1 (uncharacterized protein LOC111017071 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 4.4e-24
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MNANQSAVVDFLRAAMDNDR--GGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYS 60
           MNANQSAV+DFLRA+M+ +     RIPKPPTRLQKQAPA L+LDQ+SS SM   G ET S
Sbjct: 1   MNANQSAVIDFLRASMEKEHKAKSRIPKPPTRLQKQAPASLHLDQVSSTSMAPGGAETSS 60

Query: 61  KTVLPLLSPLPSSPQPFPETEGNR----MLANGNGVNSGGNGDQRG 101
           K +LPLLSPLP SPQP+PETE N       AN N V+  G GDQRG
Sbjct: 61  KAILPLLSPLPLSPQPWPETEENNTNRVSAANENAVD--GGGDQRG 104

[Close]

BLAST of Carg03336 vs. NCBI nr
Match: XP_021642564.1 (uncharacterized protein LOC110636965 [Hevea brasiliensis])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 53/117 (45.30%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSK-TVLPLLSPLPSSPQPFPETEGN 82
           ++ KPPTRLQK+APA L +    + +      E  S  T +PLLSPL  SP P P+    
Sbjct: 22  KVGKPPTRLQKKAPASLQVTNCGNTNHLVPSKEASSPLTPIPLLSPLILSPPPSPQQAEE 81

Query: 83  RMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAAT--YADPSTLFTFFQSKCIITS 137
                 +G    G  D++G  +A PGGWQHPA AAT  Y +PS+LFTFFQSKC++ +
Sbjct: 82  FRFPIVSGEIDKGKEDKKGACYA-PGGWQHPAAAATGGYVEPSSLFTFFQSKCVLVN 137

[Close]

BLAST of Carg03336 vs. NCBI nr
Match: XP_015874007.1 (uncharacterized protein LOC107411018 [Ziziphus jujuba])

HSP 1 Score: 87.4 bits (215), Expect = 4.1e-14
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 26  KPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT--VLPLLSPLPSSPQPFPETEGNRM 85
           KPPTRLQK+APA L LDQ+ +    S   +++++T   +PLLSPL  SPQP PE    R 
Sbjct: 14  KPPTRLQKKAPASLKLDQVPT----SAANDSFNETSKAIPLLSPLVLSPQPLPEMLEKRR 73

Query: 86  LANGNGVNSGGNGDQRGIVFASPG-GWQHPAVAATYADPSTLFTFFQSKCIITS 137
              G   +     D+R      P  GWQHPAV  T+ DPS+LF FFQS+C+I +
Sbjct: 74  F--GCAADQHDVEDKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVIVN 121

[Close]

BLAST of Carg03336 vs. TAIR10
Match: AT1G07473.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 22/50 (44.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 25 PKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQP 75
          P+ PTRLQKQAP  L+L  +         ++    T +PLLSPL  SP P
Sbjct: 14 PRSPTRLQKQAPTALHLGLVPENPFLQQSSDVVGTTAIPLLSPLFVSPSP 63

[Close]

BLAST of Carg03336 vs. TrEMBL
Match: tr|A0A0A0KBQ7|A0A0A0KBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.4e-48
Identity = 98/140 (70.00%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKT 60
           M+ANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +  SK 
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  VLPLLSPLPSSPQPFPETEGNRMLANGNGVN-SGGNGDQRGIVFASPGGWQHPAVAATYA 120
           +LPLLSPLP SPQP PE +GNR+ ANGN V+  GGNGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSKCIITSSTP 140
           DPSTLFTFFQS+C+++S+TP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of Carg03336 vs. TrEMBL
Match: tr|A0A2I4HGI9|A0A2I4HGI9_9ROSI (uncharacterized protein LOC109017360 OS=Juglans regia OX=51240 GN=LOC109017360 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPETEGNR 82
           ++ KPPTRLQK APA L LD+ +    PS  +    K + P LSPL  SPQP PET   R
Sbjct: 6   KVGKPPTRLQKHAPASLQLDKAAPAVDPSAVSGETPKAI-PFLSPLVLSPQPLPETVEKR 65

Query: 83  MLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCII 135
              +G+  +   NG++      SPGGWQHPA A   ADP+ L T FQSKC++
Sbjct: 66  SGESGSD-DQKANGEEEKSEVLSPGGWQHPA-APALADPAALCTSFQSKCLL 114

[Close]

BLAST of Carg03336 vs. TrEMBL
Match: tr|A0A1Q3CDI7|A0A1Q3CDI7_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21772 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 26  KPPTRLQKQAPAGLYLDQ--LSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPETEGNRM 85
           KPPTRLQK APA L LDQ  +S  + P   +     T +PLLSPL  SP+   ETE  R 
Sbjct: 23  KPPTRLQKHAPASLQLDQVGVSRNADPYALSAETRLTAIPLLSPLIVSPRQETETEEFRF 82

Query: 86  LANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITS 137
                  +S  +GD++   FA  GGWQHPAVA    +PS+LF FFQSKC++ +
Sbjct: 83  PTCSK--SSDTSGDEKKCTFAETGGWQHPAVAGC-TEPSSLFAFFQSKCLLVN 132

[Close]

BLAST of Carg03336 vs. TrEMBL
Match: tr|A0A2R6P663|A0A2R6P663_ACTCH (Major viral transcription factor OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc31766 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 54/117 (46.15%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 24  IPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPETEGNRM 83
           I K PTRLQK AP  L L Q++       G E  S   +PLLSPL  SPQP  E E  R+
Sbjct: 15  IAKSPTRLQKYAPPALQLGQVT-------GNEAASCYTIPLLSPLILSPQPLEEREERRL 74

Query: 84  LAN---GNGVNSGGNGDQRGIVFASPGG-WQHPAVAATYADPSTLFTFFQSKCIITS 137
           +     GNG   G + +   I+ A P G WQHPAV A + D S LF+FFQS+C I +
Sbjct: 75  VGGAGVGNGELQGTHDNNNTIMSALPSGDWQHPAVEAAFPDTSALFSFFQSQCAIVN 124

[Close]

BLAST of Carg03336 vs. TrEMBL
Match: tr|B9RRF3|B9RRF3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1189240 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 50/115 (43.48%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 23  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPF-PETEGN 82
           ++ KPPTRLQK+AP+ L ++   S   P + + +   T +PLLSPL  SP P   E E  
Sbjct: 22  KVGKPPTRLQKKAPSSLQVNY--STIYPRMPSTSSPHTPIPLLSPLIVSPPPLSQEAEEF 81

Query: 83  RMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITS 137
           R       ++ G N D+R +    PGGWQHPAVA  Y +PS+LF  FQSKC++ +
Sbjct: 82  RFPLICGEIDKGSN-DKRIVSPILPGGWQHPAVANGYMEPSSLFNIFQSKCVLVN 133

The following BLAST results are available for this feature:

BLAST of Carg03336 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512816.1	1.0e-65	93.53	uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo]	[more]
XP_011657141.1	9.7e-48	70.00	PREDICTED: uncharacterized protein LOC105435808 [Cucumis sativus] >KGN47125.1 hy...	[more]
XP_022148421.1	4.4e-24	65.09	uncharacterized protein LOC111017071 [Momordica charantia]	[more]
XP_021642564.1	2.4e-14	45.30	uncharacterized protein LOC110636965 [Hevea brasiliensis]	[more]
XP_015874007.1	4.1e-14	46.49	uncharacterized protein LOC107411018 [Ziziphus jujuba]	[more]

BLAST of Carg03336 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07473.1	2.7e-04	44.00	unknown protein	[more]

BLAST of Carg03336 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03336 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBQ7\|A0A0A0KBQ7_CUCSA	6.4e-48	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1	[more]
tr\|A0A2I4HGI9\|A0A2I4HGI9_9ROSI	2.7e-14	47.32	uncharacterized protein LOC109017360 OS=Juglans regia OX=51240 GN=LOC109017360 P...	[more]
tr\|A0A1Q3CDI7\|A0A1Q3CDI7_CEPFO	1.8e-13	47.79	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21772 PE=4...	[more]
tr\|A0A2R6P663\|A0A2R6P663_ACTCH	2.3e-13	46.15	Major viral transcription factor OS=Actinidia chinensis var. chinensis OX=159084...	[more]
tr\|B9RRF3\|B9RRF3_RICCO	1.5e-12	43.48	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1189240 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03336-RA	Carg03336-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..99
None	No IPR available	PANTHER	PTHR33912:SF2	F22G5.17	coord: 18..135
None	No IPR available	PANTHER	PTHR33912	FAMILY NOT NAMED	coord: 18..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03336	Cla013327	Watermelon (97103) v1	carwmB0330
Carg03336	Csa6G188670	Cucumber (Chinese Long) v2	carcuB0370
Carg03336	MELO3C025891	Melon (DHL92) v3.5.1	carmeB0339
Carg03336	ClCG02G019900	Watermelon (Charleston Gray)	carwcgB0327
Carg03336	CSPI06G14230	Wild cucumber (PI 183967)	carcpiB0373
Carg03336	CmaCh20G003810	Cucurbita maxima (Rimu)	carcmaB0473
Carg03336	CmaCh02G007800	Cucurbita maxima (Rimu)	carcmaB0477
Carg03336	CmoCh20G004130	Cucurbita moschata (Rifu)	carcmoB0464
Carg03336	CmoCh02G007800	Cucurbita moschata (Rifu)	carcmoB0467
Carg03336	Lsi10G014000	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03336	Cp4.1LG05g09250	Cucurbita pepo (Zucchini)	carcpeB0475
Carg03336	Cp4.1LG16g06130	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03336	CsGy6G014070	Cucumber (Gy14) v2	carcgybB0350
Carg03336	MELO3C025891.2	Melon (DHL92) v3.6.1	carmedB0345
Carg03336	CsaV3_7G010000	Cucumber (Chinese Long) v3	carcucB0379
Carg03336	Cla97C02G045900	Watermelon (97103) v2	carwmbB0346
Carg03336	Bhi10G000594	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03336	Carg26587	Silver-seed gourd	carcarB365

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03336	Cucurbita pepo (Zucchini)	carcpeB0466
Carg03336	Cucurbita pepo (Zucchini)	carcpeB0467
Carg03336	Cucurbita pepo (Zucchini)	carcpeB0481
Carg03336	Cucumber (Chinese Long) v3	carcucB0374
Carg03336	Silver-seed gourd	carcarB097
Carg03336	Silver-seed gourd	carcarB186
Carg03336	Silver-seed gourd	carcarB360
Carg03336	Cucumber (Gy14) v1	carcgyB0393