CsaV3_7G008010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G008010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionclassical arabinogalactan protein 9
Locationchr7 : 5012017 .. 5014093 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGCGAATAGCGGTTGGCCACATGTGCCTCAATGCAATTTTTATAAAGAAAAATGTATGTAAATTACCTAAATGCTCTCTATCCTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAACGCTCATCATCGCCATCGTCCAACAAGAAGAAGAAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTGTTGTGTTTCACTCTCATTTCCATTGCCTTCCCCCTCGCCCGAGCTCAGTCTCCCTCCAGTCCTCCCACTGCCACCCCTTCTCCTCCCACCACCTCCACCCCTCCTCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCGGCATCCCCACCACCGGCCTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCTTCCCCACCACCCGCATCTCCCCCTCCGGCAACTCCTCCACCAGCATCTCCTCCTCCTCCCGCGACTCCACCACCTGCACCATTGGCATCACCGCCGACGGCAGTTCCAGCTCCTGCACCAAGTAAGAAGAAGGTGAAGGCAGCAGCTCCGAGTCCGTCTCCTGTTTCGAGCCCGCCTGCGCCGTCAGTAGAGGCTCCAGGACCTGCAGGTCCTGATCAATCTCCTACCCCATCTCAGAACGACAATGTAAGTTTCTCTCCCACATTTTTTGACATTTTTTTCAAAGGTTATTATGATATGAACTTAAACTGACTCTAAGTTTCGGTTTTGACGTTGCAAAACTTAAGAACACACACACATATATAATTCAATCCTCCACACCAAAATCTACAAATCACATATATTGTTGTAGTGATCAAATGTATTGTAATTTTAGTATGTGTTCTACAATAATGAGTTTAGTTTTAATTTAGTTCTCTACCCTTATAATTTTAATCTTAACATTTAAGCCTCATTTCTTTTTAACTTTGATATTTTAGTAAATAATCATTTTCTTCTTTTAGTATTAATCTCTTTTAAATTAATTTTTTAGAAAATGATAATTATAATTAAAATTTTCCCCTTTTGTTCAAATTAGATTTAAGATTTTATTTATTTTAAGAAATTAAATTGAAAAAATATCCGTACAAAGTTTAATAAATTTTATCTTTTTAACTTTTTTTTTTGTAAATAGTTTTTCCTAATTTTTTTAAAAAAATTCCTTTTATTTATAATTCTTTTAAATTAATTAATAGAATTAAGACAAAAACTAAAAGTAAATATCGCAAAAGTATAAAATTTAAAACTTACGTACTAAATTGAAATACGACTCAATTCTTAATAGTGATCTTTTGAAATTTAGTAACCTAGATAAAAACCCGACACCAAAATGAAGGACTAAAAATGTATTTTTTTTTCCTTCTTTCTTGTAAACTTTAAAACTAAGTTTCCTTTTGTCCTACGTTTATCTTCTTTCTATCTAGGTTTTTAACGAGCACACTATTTTTATATTTTAAAATTCACGAAGATACGAACTTTTATTAGAATGCAAATTTAATATTAAATTCAACAAATAAGTTTTGTTGATCTATATCACATAAAACCGTACATTTTTAATGGAATCATAATGTATGAACTTATAAGAGAAAGATGTATAGTTATAATGTTATTTAAATTTCTTTCCACGATTGTTTTAGATGATATTTTAGTTAGTGATTATGGATCGATTAAACATTGTTATTGTTGTTGATATTGCAGAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAGGGAGAAGAAAAGGGTTTCTTTTTGCTGTCTATGTGTTGCCTCTTCTTTTCTTTTCTTTTTTCTTTCATTATTTCTTCTTCTTTGGATGGCTCTATATTTCATTTCATTTTGATTATTATTATTAATTAGCCCATGTCTTGTTTGGGACTTTTGATTTATTATTATTAGCCTTTTGGATCAGTACTACTCTCTCTTTATATATATATATAATGACCCATTTTGCTTGGGATTCTTTTGAGGCAAAAATATCTTTGTATCTACACCC

mRNA sequence

ATGTGCCTCAATGCAATTTTTATAAAGAAAAATGTATGTAAATTACCTAAATGCTCTCTATCCTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAACGCTCATCATCGCCATCGTCCAACAAGAAGAAGAAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTGTTGTGTTTCACTCTCATTTCCATTGCCTTCCCCCTCGCCCGAGCTCAGTCTCCCTCCAGTCCTCCCACTGCCACCCCTTCTCCTCCCACCACCTCCACCCCTCCTCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCGGCATCCCCACCACCGGCCTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCTTCCCCACCACCCGCATCTCCCCCTCCGGCAACTCCTCCACCAGCATCTCCTCCTCCTCCCGCGACTCCACCACCTGCACCATTGGCATCACCGCCGACGGCAGTTCCAGCTCCTGCACCAAGTAAGAAGAAGGTGAAGGCAGCAGCTCCGAGTCCGTCTCCTGTTTCGAGCCCGCCTGCGCCGTCAGTAGAGGCTCCAGGACCTGCAGGTCCTGATCAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAG

Coding sequence (CDS)

ATGTGCCTCAATGCAATTTTTATAAAGAAAAATGTATGTAAATTACCTAAATGCTCTCTATCCTCTCTATTTATTCTCTCCCCTCTTTTGATTTCCCTCTCAAACGCTCATCATCGCCATCGTCCAACAAGAAGAAGAAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTGTTGTGTTTCACTCTCATTTCCATTGCCTTCCCCCTCGCCCGAGCTCAGTCTCCCTCCAGTCCTCCCACTGCCACCCCTTCTCCTCCCACCACCTCCACCCCTCCTCCTGTTTCATCTCCCCCTCCAGCTGCTACTCCTCCTCCGGCATCCCCACCACCGGCCTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCTTCCCCACCACCCGCATCTCCCCCTCCGGCAACTCCTCCACCAGCATCTCCTCCTCCTCCCGCGACTCCACCACCTGCACCATTGGCATCACCGCCGACGGCAGTTCCAGCTCCTGCACCAAGTAAGAAGAAGGTGAAGGCAGCAGCTCCGAGTCCGTCTCCTGTTTCGAGCCCGCCTGCGCCGTCAGTAGAGGCTCCAGGACCTGCAGGTCCTGATCAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAG

Protein sequence

MCLNAIFIKKNVCKLPKCSLSSLFILSPLLISLSNAHHRHRPTRRRRRRRKMMDPRALLCFTLISIAFPLARAQSPSSPPTATPSPPTTSTPPPVSSPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPASPPPPATPPPAPLASPPTAVPAPAPSKKKVKAAAPSPSPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
Homology
[Close]
BLAST of CsaV3_7G008010 vs. NCBI nr
Match: XP_004136948.2 (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus] >KGN43867.1 hypothetical protein Csa_7G071560 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-07
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 54  DPRALLCFTLISIAFPLARAQSPSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 113
           DPRALLCFTLISIAFPLARAQSPSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2   DPRALLCFTLISIAFPLARAQSPSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 173
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDNSGVEKVWRKESMVG 233
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDNSGVEKVWRKESMVG
Sbjct: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDNSGVEKVWRKESMVG 181

Query: 234 SIVIGMGYVFLML 247
           SIVIGMGYVFLML
Sbjct: 182 SIVIGMGYVFLML 194

[Close]
BLAST of CsaV3_7G008010 vs. NCBI nr
Match: XP_008455018.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 8.6e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 217 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 247
           NDNSGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 178 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 207

[Close]
BLAST of CsaV3_7G008010 vs. TrEMBL
Match: tr|A0A0A0K6D8|A0A0A0K6D8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.4e-07
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 

Query: 54  DPRALLCFTLISIAFPLARAQSPSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 113
           DPRALLCFTLISIAFPLARAQSPSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 2   DPRALLCFTLISIAFPLARAQSPSSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 61

Query: 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 173
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDNSGVEKVWRKESMVG 233
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDNSGVEKVWRKESMVG
Sbjct: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDNSGVEKVWRKESMVG 181

Query: 234 SIVIGMGYVFLML 247
           SIVIGMGYVFLML
Sbjct: 182 SIVIGMGYVFLML 194

[Close]
BLAST of CsaV3_7G008010 vs. TrEMBL
Match: tr|A0A1S3BZW9|A0A1S3BZW9_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 217 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 247
           NDNSGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 178 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 207

The following BLAST results are available for this feature:
BLAST of CsaV3_7G008010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136948.26.6e-07100.00PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus] >KGN43867.1 hyp... [more]
XP_008455018.18.6e-07100.00PREDICTED: classical arabinogalactan protein 9 [Cucumis melo][more]
BLAST of CsaV3_7G008010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G008010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G008010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K6D8|A0A0A0K6D8_CUCSA4.4e-07100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1[more]
tr|A0A1S3BZW9|A0A1S3BZW9_CUCME5.7e-07100.00classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G008010.1CsaV3_7G008010.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 97..114
score: 33.33
coord: 80..96
score: 40.0
coord: 120..145
score: 38.46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..210
NoneNo IPR availablePANTHERPTHR37209FAMILY NOT NAMEDcoord: 56..245
NoneNo IPR availablePANTHERPTHR37209:SF1SUBFAMILY NOT NAMEDcoord: 56..245

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G008010CSPI07G07030Wild cucumber (PI 183967)cpicucB415
CsaV3_7G008010Cucsa.219310Cucumber (Gy14) v1cgycucB342
CsaV3_7G008010CmaCh19G005660Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G008010CsGy7G006600Cucumber (Gy14) v2cgybcucB348
CsaV3_7G008010Carg16348Silver-seed gourdcarcucB0490
CsaV3_7G008010MELO3C018504Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G008010ClCG02G006600Watermelon (Charleston Gray)cucwcgB572
CsaV3_7G008010Lsi03G005600Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G008010MELO3C018504.2Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G008010Cla97C02G033600Watermelon (97103) v2cucwmbB550
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G008010Cucumber (Chinese Long) v3cuccucB100
CsaV3_7G008010Cucumber (Chinese Long) v3cuccucB188
CsaV3_7G008010Silver-seed gourdcarcucB0216
CsaV3_7G008010Silver-seed gourdcarcucB0329
CsaV3_7G008010Silver-seed gourdcarcucB0412
CsaV3_7G008010Cucumber (Gy14) v2cgybcucB198
CsaV3_7G008010Cucumber (Gy14) v1cgycucB540
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0057
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0232
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0414
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0589
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0918
CsaV3_7G008010Cucurbita maxima (Rimu)cmacucB0959
CsaV3_7G008010Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G008010Cucurbita moschata (Rifu)cmocucB0409
CsaV3_7G008010Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G008010Cucurbita moschata (Rifu)cmocucB0910
CsaV3_7G008010Cucurbita moschata (Rifu)cmocucB0949
CsaV3_7G008010Cucurbita pepo (Zucchini)cpecucB0141
CsaV3_7G008010Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G008010Cucurbita pepo (Zucchini)cpecucB0582
CsaV3_7G008010Cucurbita pepo (Zucchini)cpecucB0736
CsaV3_7G008010Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G008010Cucurbita pepo (Zucchini)cpecucB0995
CsaV3_7G008010Wild cucumber (PI 183967)cpicucB123
CsaV3_7G008010Wild cucumber (PI 183967)cpicucB248
CsaV3_7G008010Bottle gourd (USVL1VR-Ls)cuclsiB558
CsaV3_7G008010Bottle gourd (USVL1VR-Ls)cuclsiB573
CsaV3_7G008010Melon (DHL92) v3.5.1cucmeB581
CsaV3_7G008010Melon (DHL92) v3.5.1cucmeB569
CsaV3_7G008010Melon (DHL92) v3.6.1cucmedB555
CsaV3_7G008010Melon (DHL92) v3.6.1cucmedB568
CsaV3_7G008010Watermelon (Charleston Gray)cucwcgB585
CsaV3_7G008010Watermelon (Charleston Gray)cucwcgB601
CsaV3_7G008010Watermelon (97103) v1cucwmB607
CsaV3_7G008010Watermelon (97103) v1cucwmB619
CsaV3_7G008010Watermelon (97103) v1cucwmB635
CsaV3_7G008010Watermelon (97103) v2cucwmbB562
CsaV3_7G008010Watermelon (97103) v2cucwmbB563
CsaV3_7G008010Watermelon (97103) v2cucwmbB577
CsaV3_7G008010Wax gourdcucwgoB686
CsaV3_7G008010Wax gourdcucwgoB702
CsaV3_7G008010Wax gourdcucwgoB724