Cla97C02G033600 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G033600
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	Cla97Chr02 : 7129896 .. 7132677 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATCGTCAAGCTTTGTTGTGTTTCACTTTCATCTCCATTGCCTTTGCCATCGCCGGAGCTCAGTCTCCCGCCAGTTCTCCCACCTACACCCCTGCTCCTCCCACCACCACCACCCCCCCTTCTACCGCCACTCCTCCCCCTGTTTCAGCTCCCCCACCGGCATCCCCACCTCCAGCAACTCCTCCTCCGGCAACTCCACCTCCGGCAACTCCCCCTCCGGCTACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCCACTCCCCCACCGGCCACTCCTCCACCTGCAACGCCACCACCCGCAACTCCACCGTCTGCACCAACGACATCCCCACCAGCAGCGGTTCCGGCTCAGGGTCCGTCCCCAGTTTCGAGCCCGCCGGCGCCGGCAATGGAAGCTCCAGGACCTGCTGGCCCTGAATCTCCTACTCCGTCTCAGAACGACAATGTGAGTCTCTTTTTCATGTTCCCAAACGTTAATGTCATAAACAAAATAACCCATAAATTTTGGATTTGGTTGCCAAACTCAGAACATATATAATTCAATCTCAGCTTAAAGATTTGAATCTACAGCCCCATTTAAAAAAGGTTTATTCCACACAAAGTGTAATTTTAAAGAAAAATACCCATTTATACTTCTAAACTTAATTAACACTTGGAAGTAGGGGAATATTTTAAAAAAAAATATAATTTCTCTATTAGTTAGGTTGGGCTCATCTTGACAAATGTATTTAAATTAATTTAAGTAACCAAAAAATTTAAAATTTTACCTACACAATTTAAGTTTAAAAAGAAATTAAAGAAAATAATTATTTGTCAAAGTATTTACAATAAAACTTAAATTTTAAATATATTATTTATAAGCATATATAATAATAATAATAACAACAACATAACAATAATTATAATAAATAAATTAAAAAAGAGTTAAACGTGGGTGGGATAGAGAATGGGGTGGAAAAGGGAGGCGGTGAGTGCATTTCCTGCCCCTTGTCCCTGTTATTTTTCTACTACTCACTCCTCCATTGTTTGCCTAAATGAAGAATCACTGCTTCGTTAGAGTGAGTTTTCGTAGGATTTGTCCCTAGAAAAAAATGAACATCTTTAATAGCAACGAAATATTATTTAATTAATTGTGTTAGAGCAAAACTTTCCCCTACTTTTTACATTACAAATACATTTTTAATCTTTTTGTAATATAATGATACGATGGTAAAGATTAAACTTTCCATCTAAAAGAGAAGGTAATAAGTGTTTTCATCCATTAAATTGTGTGTATGATAAATTTAGAAAAATTATTAAATACATTATGAACTACATCCGTTTTAGCTCATTATAATCATGTATTAGAAAAAATAAAAGGTACTTAAAAAACAGAAAAAATAAGAATTTACGACATAGCAAATTGTAATTGGACCCAATGATTTTTCATAAATGTATATATATACTTTTTAGGAAGTAAATGTATAGTTTAGAGGTGCTAAGTAACAGAAAAATGAAAAGAAATTAGTGGATAAAAGATTAGACAAAATATTTAAATCAAATTGAATTATAAAAATTCAAATCTGTATTTTAAAAAATGATAATCCGATGTTGTCGCTTCGTTTTAATAGTTCGAGCTCACGTGGACTAGTATAGTAACGGACATATCTGATTAGATTTATTTTAATTATTATTTTAAAACTAGCTTCGTTCCCCTCATTGACCCACGTTTCTCCTGTCTATCTAGCTTTTCCATCAAAACACTATTTCCATTAAGTTATTAATTATATAATTCAGCTTTATCGTTAAAAATAATCAACTACTTTTTAGCATATTAGAAATTAATATTTTAATGTATAATACAATTGACAAACTAAAAATGAAATTAATTTCTAAACTACAACTTTGATTAAAAATTATATATCTTCCATTGAAAAATTAAAGATATATTTAATAACATTTTTGTATCCTGATTCCTGATTTCGTTTCTTATTTTTAAAGAAATAGATTTTTTTATAACCATTTCTATTTTTTTGTTTCTAGATTTTGAAAAACGTTGTTACAAGAGGTTTCAAATTTGAAAAATTACATAGTTCGTCACTGGTTTAGGGGCTCCTCTTTAATCATTAAAACTCCAAGACTAGGGTTGAAAATTGAAACGATATCTTTTCTTGTTTTTAAAGAGTTCGAATTTAAGTCTATTTGATCTATAAAATTTTAACTTTATGAAGTGTTTAATAAGTTTATGAATTTTTAATATATGTGTCTAAAACATACTTGATCCAATTCAATATCTTTTAAAATTCACAAATCTACTATACAAAAAATTAAAATTTAAGAGTCTTTATTACCTATAAATTCAATTTTAAATCTAATAGATTAATTACTTTCTAAACTTTTCATATATGTCACAAAATTTTATAGATCATTTTTAATAAGATATATATATATACAAAATTAAAAGTTTAGAGAACTCTTAAATACTTTTGAAATTTATAGACTTTTTTTTTTTATTTAAAATAAACTTAAAATGAATGTGTATATATACTTTTTCTTTGAATAATTTTTTTAGATATCACTTAAATTTGTAGGTGATGTTTTTAGTTAGTCATTATCATTTAATACTATTCACGAAATAGTGACATGACATATTGAATGGATGATTATTACAGAGTGGAGTGGAGAACGTTTGGAGAAAGGAGACCATGGTGGGGAGCATATTGATTGGAATGGGATATGTATTTATGATGCTTTAG

mRNA sequence

ATGATGGATCGTCAAGCTTTGTTGTGTTTCACTTTCATCTCCATTGCCTTTGCCATCGCCGGAGCTCAGTCTCCCGCCAGTTCTCCCACCTACACCCCTGCTCCTCCCACCACCACCACCCCCCCTTCTACCGCCACTCCTCCCCCTGTTTCAGCTCCCCCACCGGCATCCCCACCTCCAGCAACTCCTCCTCCGGCAACTCCACCTCCGGCAACTCCCCCTCCGGCTACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCCACTCCCCCACCGGCCACTCCTCCACCTGCAACGCCACCACCCGCAACTCCACCGTCTGCACCAACGACATCCCCACCAGCAGCGGTTCCGGCTCAGGGTCCGTCCCCAGTTTCGAGCCCGCCGGCGCCGGCAATGGAAGCTCCAGGACCTGCTGGCCCTGAATCTCCTACTCCGTCTCAGAACGACAATAGTGGAGTGGAGAACGTTTGGAGAAAGGAGACCATGGTGGGGAGCATATTGATTGGAATGGGATATGTATTTATGATGCTTTAG

Coding sequence (CDS)

ATGATGGATCGTCAAGCTTTGTTGTGTTTCACTTTCATCTCCATTGCCTTTGCCATCGCCGGAGCTCAGTCTCCCGCCAGTTCTCCCACCTACACCCCTGCTCCTCCCACCACCACCACCCCCCCTTCTACCGCCACTCCTCCCCCTGTTTCAGCTCCCCCACCGGCATCCCCACCTCCAGCAACTCCTCCTCCGGCAACTCCACCTCCGGCAACTCCCCCTCCGGCTACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCTACTCCTCCTCCGGCAACTCCCCCTCCGGCCACTCCCCCACCGGCCACTCCTCCACCTGCAACGCCACCACCCGCAACTCCACCGTCTGCACCAACGACATCCCCACCAGCAGCGGTTCCGGCTCAGGGTCCGTCCCCAGTTTCGAGCCCGCCGGCGCCGGCAATGGAAGCTCCAGGACCTGCTGGCCCTGAATCTCCTACTCCGTCTCAGAACGACAATAGTGGAGTGGAGAACGTTTGGAGAAAGGAGACCATGGTGGGGAGCATATTGATTGGAATGGGATATGTATTTATGATGCTTTAG

Protein sequence

MMDRQALLCFTFISIAFAIAGAQSPASSPTYTPAPPTTTTPPSTATPPPVSAPPPASPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPSAPTTSPPAAVPAQGPSPVSSPPAPAMEAPGPAGPESPTPSQNDNSGVENVWRKETMVGSILIGMGYVFMML

Homology

[Close]

BLAST of Cla97C02G033600 vs. NCBI nr
Match: XP_008455018.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 162 NDNSGVENVWRKETMVGSILIGMGYVFMML 192
           NDNSGVE VWRKE+MVGSI+IGMGYVF+ML
Sbjct: 178 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 207

[Close]

BLAST of Cla97C02G033600 vs. NCBI nr
Match: XP_004136948.2 (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus] >KGN43867.1 hypothetical protein Csa_7G071560 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 162 NDNSGVENVWRKETMVGSILIGMGYVFMML 192
           NDNSGVE VWRKE+MVGSI+IGMGYVF+ML
Sbjct: 165 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 194

[Close]

BLAST of Cla97C02G033600 vs. NCBI nr
Match: XP_022952421.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 162 NDNSGVENVWRKETMVGSILIGMGYVFMM 191
           NDNSGVE  WRKETMVGS+LIGMGYV MM
Sbjct: 180 NDNSGVEKSWRKETMVGSMLIGMGYVLMM 208

[Close]

BLAST of Cla97C02G033600 vs. NCBI nr
Match: XP_023553858.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 162 NDNSGVENVWRKETMVGSILIGMGYVFMM 191
           NDNSGVE  WRKETMVGS+LIGMGYV MM
Sbjct: 177 NDNSGVEKSWRKETMVGSMLIGMGYVLMM 205

[Close]

BLAST of Cla97C02G033600 vs. TrEMBL
Match: tr|A0A1S3BZW9|A0A1S3BZW9_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 162 NDNSGVENVWRKETMVGSILIGMGYVFMML 192
           NDNSGVE VWRKE+MVGSI+IGMGYVF+ML
Sbjct: 178 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 207

[Close]

BLAST of Cla97C02G033600 vs. TrEMBL
Match: tr|A0A0A0K6D8|A0A0A0K6D8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 162 NDNSGVENVWRKETMVGSILIGMGYVFMML 192
           NDNSGVE VWRKE+MVGSI+IGMGYVF+ML
Sbjct: 165 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 194

The following BLAST results are available for this feature:

BLAST of Cla97C02G033600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455018.1	4.8e-05	86.67	PREDICTED: classical arabinogalactan protein 9 [Cucumis melo]	[more]
XP_004136948.2	4.8e-05	86.67	PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus] >KGN43867.1 hyp...	[more]
XP_022952421.1	4.0e-04	86.21	classical arabinogalactan protein 9-like [Cucurbita moschata]	[more]
XP_023553858.1	4.0e-04	86.21	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C02G033600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZW9\|A0A1S3BZW9_CUCME	3.2e-05	86.67	classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4...	[more]
tr\|A0A0A0K6D8\|A0A0A0K6D8_CUCSA	3.2e-05	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1	[more]

BLAST of Cla97C02G033600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G033600 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G033600.1	Cla97C02G033600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 29..45 score: 45.88 coord: 64..89 score: 45.38 coord: 46..63 score: 33.33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..156
None	No IPR available	PANTHER	PTHR35077	FAMILY NOT NAMED	coord: 2..164
None	No IPR available	PANTHER	PTHR35077:SF1	SUBFAMILY NOT NAMED	coord: 2..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G033600	Cla016078	Watermelon (97103) v1	wmwmbB317
Cla97C02G033600	Csa7G071560	Cucumber (Chinese Long) v2	cuwmbB530
Cla97C02G033600	MELO3C018504	Melon (DHL92) v3.5.1	mewmbB180
Cla97C02G033600	ClCG02G006600	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G033600	CSPI07G07030	Wild cucumber (PI 183967)	cpiwmbB554
Cla97C02G033600	Cucsa.219310	Cucumber (Gy14) v1	cgywmbB395
Cla97C02G033600	MELO3C018504.2	Melon (DHL92) v3.6.1	medwmbB166
Cla97C02G033600	CsaV3_7G008010	Cucumber (Chinese Long) v3	cucwmbB550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G033600	Watermelon (97103) v2	wmbwmbB101
Cla97C02G033600	Watermelon (97103) v2	wmbwmbB102
Cla97C02G033600	Watermelon (97103) v2	wmbwmbB110
Cla97C02G033600	Silver-seed gourd	carwmbB0193
Cla97C02G033600	Silver-seed gourd	carwmbB0303
Cla97C02G033600	Silver-seed gourd	carwmbB0394
Cla97C02G033600	Silver-seed gourd	carwmbB0477
Cla97C02G033600	Cucumber (Gy14) v2	cgybwmbB503
Cla97C02G033600	Cucumber (Gy14) v1	cgywmbB600
Cla97C02G033600	Cucurbita maxima (Rimu)	cmawmbB104
Cla97C02G033600	Cucurbita maxima (Rimu)	cmawmbB342
Cla97C02G033600	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G033600	Cucurbita maxima (Rimu)	cmawmbB744
Cla97C02G033600	Cucurbita moschata (Rifu)	cmowmbB088
Cla97C02G033600	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G033600	Cucurbita moschata (Rifu)	cmowmbB717
Cla97C02G033600	Cucumber (Chinese Long) v3	cucwmbB292
Cla97C02G033600	Bottle gourd (USVL1VR-Ls)	lsiwmbB226
Cla97C02G033600	Bottle gourd (USVL1VR-Ls)	lsiwmbB277
Cla97C02G033600	Bottle gourd (USVL1VR-Ls)	lsiwmbB433
Cla97C02G033600	Watermelon (97103) v1	wmwmbB088
Cla97C02G033600	Wax gourd	wgowmbB297