MELO3C018504.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C018504.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProline-rich protein 1
Locationchr01 : 709148 .. 710678 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGCTCATCGTCATCCTCGAACAACCAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTTTTGTTGTGTTTCACTTTCATCTCCATTGCTTTCGCCATCGCCGGAGCTCAGTCTCCCTCCAGTCCTCCCACCGCCACCCCTTCTCCTCCCACCACCTCCGCCCCTCCTCCCGCCTCTACTCCTCCCCCTGTTTCATCTCCCCCTCCAGCAGCAACTCCCCCTCCAGCTGCTACTCCTCCTCCAGCATCCCCACCACCGGCGTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCCTCCCCACCACCGGCTTCTCCTCCTCCGGCATCTCCTCCACCAGCATCCCCTCCCCCAGCGATTCCACCGCCTGCACCATTGGCATCACCACCAACGGCAGTGCCAGCTCCTGCACCGAGCAAGAAGAAGGTGAAGGCAGCAGCTCCGGGTCCGGCTCCAGTTTCGAGCCCGCCAGCGCCGTCAGTGGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAATGTAAGTTTCTCCCGCATTTTTTACATTTTTATCAAAGCTGGTTATTATTATATGAACTTAAATTGACTCTAAGTTTTGATTTTGGCGTTGCAAAACTTAGAACACACACACACACACACACATATATAATTCAATCCTCCACCAAAATCTACAAACCACATATACATTGTTGTACTTGTAGTAATCAAATGTATTTTAATTTTAATCGAAAGACATTAATACTAAAAGCAGAAAATGATTTAAGATTTATGATAATTATAATTAAATTTCGCCATTTATTATTAAAATTAATAAAATATTTACATTTTATAAATAAAATAAATAGTTTAAGTTTAAAAAATTTTGATCTTAATGATTTAAAAACATAAATATTTTGTCAATTTTTTATTTTTAAAAAATTCATTTTATTTTATAATTATTCTAATTTAATTAATAAAATTAAGAAGAAAAAAACTAAAAGTGATTATCCAATAAAGTACAAGTATAAATTTTAAAATTTAGTTACGTTGAAAATCTTAATAGTAAAATTGTGATATTTTAAGCTATAAATAATAGTTTAAAAAAATTCAAATAAGTTTTGTTTATGTAAAAAAAAACCGTACTTTTTTAATAGGATCGGAATGTATAAACTTTATAAATGAAAGATGTATAATAATGTTATTTTTCTTTCGACGATTATTTTAGATGATGTTTTTTTAGTTAGTAATTATAATTGACATGATATATTGAACGGATGAACGTTGTTGTTATTGCAGAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAGGGAGAAGAAAATTAAAGGGTTTCCTTTTGCTGTCTATGTGTTTGCCTCTTTCTTTTTTTTTCCCTTCATTATTTCCTTTCTTCTTGGGATGGCTCTATATTTCATTTCA

mRNA sequence

AAACGCTCATCGTCATCCTCGAACAACCAGAAGAAGAAGAAAAATGATGGATCCTCGAGCTTTTTTGTTGTGTTTCACTTTCATCTCCATTGCTTTCGCCATCGCCGGAGCTCAGTCTCCCTCCAGTCCTCCCACCGCCACCCCTTCTCCTCCCACCACCTCCGCCCCTCCTCCCGCCTCTACTCCTCCCCCTGTTTCATCTCCCCCTCCAGCAGCAACTCCCCCTCCAGCTGCTACTCCTCCTCCAGCATCCCCACCACCGGCGTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCCTCCCCACCACCGGCTTCTCCTCCTCCGGCATCTCCTCCACCAGCATCCCCTCCCCCAGCGATTCCACCGCCTGCACCATTGGCATCACCACCAACGGCAGTGCCAGCTCCTGCACCGAGCAAGAAGAAGGTGAAGGCAGCAGCTCCGGGTCCGGCTCCAGTTTCGAGCCCGCCAGCGCCGTCAGTGGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAGGGAGAAGAAAATTAAAGGGTTTCCTTTTGCTGTCTATGTGTTTGCCTCTTTCTTTTTTTTTCCCTTCATTATTTCCTTTCTTCTTGGGATGGCTCTATATTTCATTTCA

Coding sequence (CDS)

ATGATGGATCCTCGAGCTTTTTTGTTGTGTTTCACTTTCATCTCCATTGCTTTCGCCATCGCCGGAGCTCAGTCTCCCTCCAGTCCTCCCACCGCCACCCCTTCTCCTCCCACCACCTCCGCCCCTCCTCCCGCCTCTACTCCTCCCCCTGTTTCATCTCCCCCTCCAGCAGCAACTCCCCCTCCAGCTGCTACTCCTCCTCCAGCATCCCCACCACCGGCGTCTCCACCTCCCGCATCCCCACCACCAGCGACTCCACCTCCGGCTTCCCCACCACCGGCATCTCCTCCTCCGGCCTCCCCACCACCGGCTTCTCCTCCTCCGGCATCTCCTCCACCAGCATCCCCTCCCCCAGCGATTCCACCGCCTGCACCATTGGCATCACCACCAACGGCAGTGCCAGCTCCTGCACCGAGCAAGAAGAAGGTGAAGGCAGCAGCTCCGGGTCCGGCTCCAGTTTCGAGCCCGCCAGCGCCGTCAGTGGAGGCTCCAGGACCTGCAGGCCCTGATCAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGTGGAGAAAGTTTGGAGAAAGGAGAGTATGGTGGGGAGCATAGTGATTGGAATGGGATATGTATTTTTGATGCTTTAG

Protein sequence

MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAATPPPASPPPASPPPASPPPATPPPASPPPASPPPASPPPASPPPASPPPASPPPAIPPPAPLASPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAPSVEAPGPAGPDQSPTPSQNDNSGVEKVWRKESMVGSIVIGMGYVFLML
Homology
[Close]
BLAST of MELO3C018504.2 vs. NCBI nr
Match: XP_008455018.1 (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 

Query: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDN 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDN
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDN 180

Query: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 208
           SGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 207

[Close]
BLAST of MELO3C018504.2 vs. NCBI nr
Match: XP_004136948.2 (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus] >KGN43867.1 hypothetical protein Csa_7G071560 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 178 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 208
           NDNSGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 165 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 194

[Close]
BLAST of MELO3C018504.2 vs. TrEMBL
Match: tr|A0A1S3BZW9|A0A1S3BZW9_CUCME (classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 

Query: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MMDPRAFLLCFTFISIAFAIAGAQSPSSPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDN 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDN
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDN 180

Query: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 208
           SGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 181 SGVEKVWRKESMVGSIVIGMGYVFLML 207

[Close]
BLAST of MELO3C018504.2 vs. TrEMBL
Match: tr|A0A0A0K6D8|A0A0A0K6D8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.1e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 178 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 208
           NDNSGVEKVWRKESMVGSIVIGMGYVFLML
Sbjct: 165 NDNSGVEKVWRKESMVGSIVIGMGYVFLML 194

The following BLAST results are available for this feature:
BLAST of MELO3C018504.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455018.11.7e-08100.00PREDICTED: classical arabinogalactan protein 9 [Cucumis melo][more]
XP_004136948.21.2e-06100.00PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus] >KGN43867.1 hyp... [more]
BLAST of MELO3C018504.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C018504.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C018504.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BZW9|A0A1S3BZW9_CUCME1.1e-08100.00classical arabinogalactan protein 9 OS=Cucumis melo OX=3656 GN=LOC103495292 PE=4... [more]
tr|A0A0A0K6D8|A0A0A0K6D8_CUCSA8.1e-07100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071560 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018504.2.1MELO3C018504.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 72..97
score: 41.54
coord: 54..71
score: 33.33
coord: 30..46
score: 40.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..171
NoneNo IPR availablePANTHERPTHR37209FAMILY NOT NAMEDcoord: 8..206
NoneNo IPR availablePANTHERPTHR37209:SF1SUBFAMILY NOT NAMEDcoord: 8..206

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018504.2Csa7G071560Cucumber (Chinese Long) v2cumedB509
MELO3C018504.2CSPI07G07030Wild cucumber (PI 183967)cpimedB523
MELO3C018504.2Cucsa.219310Cucumber (Gy14) v1cgymedB377
MELO3C018504.2Lsi03G005600Bottle gourd (USVL1VR-Ls)lsimedB260
MELO3C018504.2CsGy7G006600Cucumber (Gy14) v2cgybmedB465
MELO3C018504.2Cla97C02G033600Watermelon (97103) v2medwmbB166
MELO3C018504.2Carg16348Silver-seed gourdcarmedB0463
MELO3C018504.2CsaV3_7G008010Cucumber (Chinese Long) v3cucmedB536
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018504.2Cucumber (Gy14) v2cgybmedB087
MELO3C018504.2Cucumber (Gy14) v2cgybmedB236
MELO3C018504.2Cucumber (Gy14) v1cgymedB568
MELO3C018504.2Cucumber (Gy14) v1cgymedB639
MELO3C018504.2Cucurbita maxima (Rimu)cmamedB018
MELO3C018504.2Cucurbita maxima (Rimu)cmamedB106
MELO3C018504.2Cucurbita maxima (Rimu)cmamedB331
MELO3C018504.2Cucurbita maxima (Rimu)cmamedB535
MELO3C018504.2Cucurbita maxima (Rimu)cmamedB754
MELO3C018504.2Cucurbita maxima (Rimu)cmamedB809
MELO3C018504.2Cucurbita moschata (Rifu)cmomedB006
MELO3C018504.2Cucurbita moschata (Rifu)cmomedB091
MELO3C018504.2Cucurbita moschata (Rifu)cmomedB317
MELO3C018504.2Cucurbita moschata (Rifu)cmomedB523
MELO3C018504.2Cucurbita moschata (Rifu)cmomedB751
MELO3C018504.2Cucurbita pepo (Zucchini)cpemedB103
MELO3C018504.2Cucurbita pepo (Zucchini)cpemedB220
MELO3C018504.2Cucurbita pepo (Zucchini)cpemedB263
MELO3C018504.2Cucurbita pepo (Zucchini)cpemedB457
MELO3C018504.2Cucurbita pepo (Zucchini)cpemedB715
MELO3C018504.2Cucurbita pepo (Zucchini)cpemedB883
MELO3C018504.2Wild cucumber (PI 183967)cpimedB100
MELO3C018504.2Wild cucumber (PI 183967)cpimedB266
MELO3C018504.2Cucumber (Chinese Long) v2cumedB100
MELO3C018504.2Cucumber (Chinese Long) v2cumedB266
MELO3C018504.2Melon (DHL92) v3.6.1medmedB080
MELO3C018504.2Melon (DHL92) v3.6.1medmedB094
MELO3C018504.2Melon (DHL92) v3.6.1medmedB098
MELO3C018504.2Bottle gourd (USVL1VR-Ls)lsimedB306
MELO3C018504.2Bottle gourd (USVL1VR-Ls)lsimedB485
MELO3C018504.2Watermelon (Charleston Gray)medwcgB214
MELO3C018504.2Watermelon (Charleston Gray)medwcgB184
MELO3C018504.2Watermelon (Charleston Gray)medwcgB192
MELO3C018504.2Watermelon (Charleston Gray)medwcgB204
MELO3C018504.2Watermelon (97103) v1medwmB214
MELO3C018504.2Watermelon (97103) v1medwmB215
MELO3C018504.2Watermelon (97103) v1medwmB227
MELO3C018504.2Watermelon (97103) v1medwmB232
MELO3C018504.2Silver-seed gourdcarmedB0189
MELO3C018504.2Silver-seed gourdcarmedB0196
MELO3C018504.2Silver-seed gourdcarmedB0306
MELO3C018504.2Silver-seed gourdcarmedB0382
MELO3C018504.2Cucumber (Chinese Long) v3cucmedB101
MELO3C018504.2Cucumber (Chinese Long) v3cucmedB269
MELO3C018504.2Cucumber (Chinese Long) v3cucmedB275
MELO3C018504.2Watermelon (97103) v2medwmbB160
MELO3C018504.2Watermelon (97103) v2medwmbB178
MELO3C018504.2Watermelon (97103) v2medwmbB179
MELO3C018504.2Watermelon (97103) v2medwmbB190
MELO3C018504.2Wax gourdmedwgoB200
MELO3C018504.2Wax gourdmedwgoB228
MELO3C018504.2Wax gourdmedwgoB264