CsaV3_7G007700 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCCATAGTTGTTGTTCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGAACCCCTCATGTTTCAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAACCAGTCTCGCGGTGGCCTTCCTCGCTTCTTCTCCCAAGTTCTACCTTCTTATAAGGCAATCCCTCTTTTTGTTTTGTTTGTTTTTTTTTTTTTTTTTCAATTACTAAGTTTTTATACGATTGAAAATTGTGTATGAGATGGGGTTGTGTTAGTTTTGGATGGGGCTGTCGATTTGAATGGATTGTTATTAATTTTTTCCTTTTTGGTTTAAGTGGAATGTTGATGACTCTGAATTTTGGAAGACAGAGTGTTGTCATTATGAGTGGGGTTTGATTTAATCCATTAAATGTTAGTTATGGAGCTTTGTGTTCTTGGGAAAACTTGGAATGCTTTCGATATTTTGTCGTGGGGAGTTGGTATCTATGAACTGAACCTATGAGATGGATAATGGCATTTACTATGATGAAATTGGATGGGATGGGATGGGATGGATGATTATTTTCCTAGTGGCATTTCTATTGATCTCTTCAAGTAAGTCTTAGGAATTTTTCATGTAATGATAGTAGAGGGAAGTTTAACTACATTGTGTAATGTCATGCTGTAGTAAGCTTAATGCATTACTTGATTTGATAGTTTTGTAAAGTTAGATTGTGGAAATGGAACTGCTCTCATATCATATGCTTCATCATTATCCAGGGTGATGTTATTCGTCTAGAAGGTGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAAACTGATGATAGGTACTACTTCTAATAGTCAACAGCAAAACCGTTTGTTATTATCTAGACATATGGGTTACTGGGTGGATTCTTTTCTCTATTTATATGTTTGTTATCTTTATGATAATTGGATGTAAATTCAAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACATTCGTGTCAATGGACTTGAGATTCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCATGCGGTAAGATTCTTATGAGGAATCATTAAACTGTTACTGCATCTTTTATTCTTTGGCATGGAAATTAACTGCCTTTGTTTAGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAAAAATGTACGGTGAGTAAATGTAGACTAAGGTGATGCAAAATAAAAAATTTTGCTTCCTAATTTTCTTGCTGCCTTTTCTCTTTATTTAGGAACTGGGTGCTAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTACAAAGATTTGAACGTATCGCATTGGCAGCAACTAAACAATGTGAGTCATTATTCAAGTTAAGTTTCTTTGCCTTTGGAGTGGGAATTTGAGACATTTCAATCTGGTTTGTTGCTTGACGTCTAATTACGTTTGGAAAATTTACGCAACCTTCATTGCAGGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCTTTGTGAGTTGCAATCCAACTTTTCCCTTGTGCTAATAAACAAAATCATAAAAGAATCACGATTCATGTACATTTGCGATATAGAATTAAGCATATTTCTTCAACAAATGGTCAAGTACTTCCTGTACTAGTGATTAGGTGAAATGGTTTCATTTTCCATGGTTTTCTTGAAATTTTCAACATTCTGAGATTCAAGGTTGTATATCCATCTTAAAAGTAATTCATTATAATGTCCACTTGATGTGGCCTTTTTCATAAACGATTATTCTATTCTTTTAGTAATTATGTTAATAAATGATAAGCAACTGAGACATATTGATACAGAGGAGAAAAGCAGCCTAGGAACCGGAATCCTGGCCTGAAGAAAATACAAAAGAATTGCATAGCATTTTATACTACAAATTCTTCTCTTTAACTTAATTTCATAATCGCTTTGGTTTTATTTTGTTCCCTGTAGATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACGCCGCTTGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGGTATATTTTATATTGTACTTCTGCTTTTTCAAGATGAGTGCAATTTTGCTACAATATTAATAAGTGGTTTTTAGTGTAGTTAGTGTTTCAACATTCTAATGAAGAGGCATATTAAAGTCTTACAAATTTCAGCATTCTGTGATCTGTCGTGAATAGCATTTTTTTAAAAAACATTGTGATGGATTTAAATGTCCATCAGTATGTCAAAATTTTGGCTGTGGTGGATGTATTTGTCGTCAAACTAATCTACCCAAGAAATAGAGTAATAGCTCATATACTTCATACTTTTTACCAGGAAATAGGAATTTTATCGTGCATGGAAAATTACCTATCTTATCTATTGTTAATTGTCCACCTACGGAATAATAATCCGTGGAAAGCAGTGGCTAATGTAATGCAAACAATTGTTTGGGGTACCAGATCATTTTAATATTGTTAGTGACATTAACTAGTACTTGAATGATATTTCCCCTTCATGCTGGAGAATATCAAGAAATCCTTTACTTCTCTTCATCCAGTGCCATGCCGTTCTTTTTTTCTTCATCTTTTCCCCCTTTTTTATTCTTCAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTCGCAATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCCAACTGTTAA ATGTTCCATAGTTGTTGTTCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGAACCCCTCATGTTTCAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAACCAGTCTCGCGGTGGCCTTCCTCGCTTCTTCTCCCAAGTTCTACCTTCTTATAAGGGTGATGTTATTCGTCTAGAAGGTGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAAACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACATTCGTGTCAATGGACTTGAGATTCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCATGCGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAAAAATGTACGGAACTGGGTGCTAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTACAAAGATTTGAACGTATCGCATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCTTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACGCCGCTTGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTCGCAATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCCAACTGTTAA ATGTTCCATAGTTGTTGTTCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGAACCCCTCATGTTTCAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAACCAGTCTCGCGGTGGCCTTCCTCGCTTCTTCTCCCAAGTTCTACCTTCTTATAAGGGTGATGTTATTCGTCTAGAAGGTGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAAACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACATTCGTGTCAATGGACTTGAGATTCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCATGCGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAAAAATGTACGGAACTGGGTGCTAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTACAAAGATTTGAACGTATCGCATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCTTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACGCCGCTTGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTCGCAATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCCAACTGTTAA MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFERIALAATKQCQRLHQMNLNSPLKIDGLLPFINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKSSNC
BLAST of CsaV3_7G007700 vs. NCBI nr
Match: XP_004136932.2 (PREDICTED: uncharacterized protein LOC101213733 [Cucumis sativus]) HSP 1 Score: 590.1 bits (1520), Expect = 4.2e-165 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. NCBI nr
Match: XP_008455052.1 (PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo]) HSP 1 Score: 563.5 bits (1451), Expect = 4.2e-157 Identity = 283/296 (95.61%), Postives = 288/296 (97.30%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. NCBI nr
Match: XP_022972429.1 (uncharacterized protein LOC111470992 [Cucurbita maxima]) HSP 1 Score: 538.9 bits (1387), Expect = 1.1e-149 Identity = 270/295 (91.53%), Postives = 282/295 (95.59%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. NCBI nr
Match: XP_023553831.1 (uncharacterized protein LOC111811289 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553832.1 uncharacterized protein LOC111811289 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 537.7 bits (1384), Expect = 2.4e-149 Identity = 271/295 (91.86%), Postives = 280/295 (94.92%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. NCBI nr
Match: XP_022952195.1 (uncharacterized protein LOC111454941 [Cucurbita moschata]) HSP 1 Score: 534.6 bits (1376), Expect = 2.1e-148 Identity = 270/295 (91.53%), Postives = 279/295 (94.58%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. TAIR10
Match: AT1G50000.1 (methyltransferases) HSP 1 Score: 350.5 bits (898), Expect = 1.0e-96 Identity = 184/288 (63.89%), Postives = 217/288 (75.35%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. Swiss-Prot
Match: sp|Q8K9E4|RSME_BUCAP (Ribosomal RNA small subunit methyltransferase E OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=rsmE PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15 Identity = 68/244 (27.87%), Postives = 118/244 (48.36%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. Swiss-Prot
Match: sp|P54461|RSME_BACSU (Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmE PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.0e-15 Identity = 61/227 (26.87%), Postives = 106/227 (46.70%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. Swiss-Prot
Match: sp|Q92J59|RSME_RICCN (Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=rsmE PE=3 SV=2) HSP 1 Score: 82.8 bits (203), Expect = 7.0e-15 Identity = 62/222 (27.93%), Postives = 101/222 (45.50%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. Swiss-Prot
Match: sp|P44627|RSME_HAEIN (Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rsmE PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.7e-14 Identity = 63/229 (27.51%), Postives = 116/229 (50.66%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. Swiss-Prot
Match: sp|P72667|RSME_SYNY3 (Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmE PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.3e-13 Identity = 59/222 (26.58%), Postives = 106/222 (47.75%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. TrEMBL
Match: tr|A0A1S3BZZ7|A0A1S3BZZ7_CUCME (ribosomal RNA small subunit methyltransferase E OS=Cucumis melo OX=3656 GN=LOC103495322 PE=4 SV=1) HSP 1 Score: 563.5 bits (1451), Expect = 2.8e-157 Identity = 283/296 (95.61%), Postives = 288/296 (97.30%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. TrEMBL
Match: tr|A0A0A0K4E1|A0A0A0K4E1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070790 PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 2.4e-116 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. TrEMBL
Match: tr|A0A2H5P8T1|A0A2H5P8T1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_114290 PE=4 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 2.0e-107 Identity = 196/279 (70.25%), Postives = 236/279 (84.59%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. TrEMBL
Match: tr|M5W4K3|M5W4K3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G149200 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 3.4e-107 Identity = 197/291 (67.70%), Postives = 245/291 (84.19%), Query Frame = 0
BLAST of CsaV3_7G007700 vs. TrEMBL
Match: tr|V4SG52|V4SG52_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030269mg PE=4 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 5.8e-107 Identity = 193/278 (69.42%), Postives = 234/278 (84.17%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |