Carg16319 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16319
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ribosomal RNA small subunit methyltransferase E
Location	Cucurbita_argyrosperma_scaffold_088 : 239772 .. 245891 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGATATTGAGGAACGGCGAAGAGGGACGGCGGTGAACGAGCGGCAAGTAAGGACATAGTATTGCCCGGCGATGGTTAACTGTCGCAGAGGATTGAGTTAAGGATTTCCCACGTAAAGGGAACCTTTCCTTGTTTACAAAACTTTTTTCCTTTTTCACAAATATTTAAAAAGTTTTATTAATATTTTTTAAAAACATTTTAAAAATATCTAAGTCGTGTTAAATTAATAATTTCTCACTTACTTTGTTAGATGAAAATCCCACATCGGCTACTTTGTTCGATGGAAATGTTTGATGGGAGCTCGGAAATTAAATCTACATTGACTATTTTTTTAAATTACACGTCTTTTAAACTTTCTTCAGAGGTACCCATGGTCATGGTTATCCTTATCCAAAACGTGTTGTTTATGACTGTGTGTCCGATGTCACAATCATATTTATATAGTGCCGGTTGTTCATGTCGTGTATAAGACGTCACAATCACGTTTGTATCGTGCGTGTTGTTCATTGTCGATTCTTACCTGAGTTATATGATATCAAAGTTATAGTTGTTGCTTATTCACTTTTAGCCTTTCAAATTGTCTCCAAACCATTTTCTCGCTCACCTTTTATTCCCCTTTTATAAAAATATTTTTATGTCAAACATGATTTAAGGCTCGAACCCAGGTCAAGTGGCATCATACTTTCACTATAAGGTCCCTTCCCTACTTCCAGCGAGAGCCTTTTACCGTTTCAGAGTGGCCAAGCAGAGCTGAGAATTCCATGCTTGTTCAGTGTTGGAAGCTTGAAAGCGTCACACCAGCGGCGATCCTCATGTTCCATAGTTGTTGTTCTTTGCAAATGCGAACTATAGGAGAAATACGACCTCAATTGACGGAGTTATTCAACCGTTCGTGTTTCAGAAGCTTCAGAGTTAGAGCTCTCTCGTCTTCATCTCTGGCTTCCTCGAATCAATCCCGCGGTGGTCTTCCTCGCTTCTTCTCCCAAGTTCTTCCTTCTTATAAGGCAATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTAATTTTCATGTTTTTATATGATCGGAAATTGTTTATATAGTTGTGTATGAGGTTTTGATTGTGAAAATTTGAAGAACCGATTGATTTTCCTCGCGCTGTAGCTTTTACTGTGACTACACGAGTCGGGATTGTGTTATGTTTTGAATGCGATCTGTCCATTTGAATGGATGATTACAAACTTTTTATTCTCTAAGTGAGCCCATATTCGCGTTTCCTACCAAAAAGCTAACCCAACCGAAGAAAATGACTGGAAATGGCTATAAAGAATCTCATTCCTTCCTCCCTTTCTTCCCCTGTTTCTGACATCGATATAGCCCTCTCGAAACCTAGCTATTAGAGTTGCATTTCCGGGCTAATATTCCACTTAGTCCCCAAATGGGTACTTGAACCCTTCTCCGGCCAGGTATAGAACAACTAAGGTGTGGGTCCTCCTCGCTTTGGTTCTGCTTATGTGGTGACCAAGAAGCAAGACCTTGAGCTCAACCAGCCATTGATAATCACTTTTGTGGTTCCCAATCAGGATGGAGTTTCGGTCCAGTGTAGGGGACGCCTTCTTCATGATCTAGGGGTCCAATGTAGCCTGTGTTAAGCGGAGTGTTGGTGACTCTGAATTTTGGAAGACCAAGGAGGCGTGTCAATAGGGGTGGCGTTTGATCCATGAAATGTTAATTATGGAGCTTTGTGTTCTTGTGCAAATTTGGAATGTTTTAGATGGTTCTTTGTGGGGGAGTTGGTATCTATGAACTTATGAGATGGATAATGGCATTTACTAAGATGAAATTGGATAGGATGGATGGTTGTTTCCCTAATGGTATCTCTATTGGTTTCTTCAAGTAAGTCTTTTAGGAATTTGTCATATAATGATATTCTAGTGAAGCTAAACTACATTGTTTAATTTCATGTTGTAGTAAGCTTAATGCTTGATTTGATTTGATAATTTTGTAAAGTTAGATTGTGATGCTTGGTTTGATTGCGGAACTGGAACTGCTGTCTTAACATATGCTTCGTCGTTATCCAGGGTGATGTTATTCGTCTAGAAGGCGATGAAGTCTGGCATATGACTAAAGTTTTGAGGTTGAAGACTGATGATAGGTACTATTTTTAATAGTCACTACAAGAAATAATAGATACGATAGCTTACAAAAAATGCTATCATAGACATTTTATAGCGTTTTTCGTACTAGTCGACGTCATTCACTATTATCTGGACATGTGTGTCACTGGCTAGATCCTTCTATCTTTATCTGATTGTTTTCTTCATGATAATTGGATGTAAATTAAAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAACGGACTCGACATTCTGGCAATGGAAGATCCAAAATCTGTTCTACCTCAAAGCACACAGTGGCATGTATTTGCAGCTTGTGGTGAGATTCTTTTGTGGAATCATTAACTGTTTACTGCATCTTGTGGCATGGAAATTAACATGTCTTTGTTTAGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACAGTAAGTAAATGTAGACTACGGTGTTGCAAATGAAAATTTTTACTTCCTAATTATCTTGCTGCCCCTTTCATTTTATCTAGGAACTGGGTGCCAGTAGCGTAACTCCACTGCTAACAGAACGTTGCGCTACCATATCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTGAGTCAGTATTCAAGTAAACTTTGTTCACCTTGGGAGTGCGAACTTGAGACAGTTCAATTTGGCTTGTTGGTGTTGTCTAATTACGTTTGGGAATTTTTTATGTATCCTTCATCGCAGGTCAAAGACTGCACCAAATGAGTCTGAATTCTCCATTGAAGATTGATGGTCTTTTGCACATAGTGAGTTGCAGCACAATTTTCTTCGTGTACTTTATTGACCTTTGTGCTTGGCTTCGCTAGCATTTTTTTTTTAAAAAAAAAAATCATAAATGAATTATGGACCCTTGGGATAATTTAATAATTAAGCATATTTCCACTACAATTGGTCAAGTCCTTGTAATATTTGTTGAGGATTGTTGGGAGGGAGTTCCACGGGATGATCATGAGTTTATAAGTAAGGAATACATCACCATTGGTATGAGGCCTTTTGAGGAAACCAAAAGTAAAGTCATGAGAGATTATGCTCAAAGTGGACAATATCATATCATTGTGGAGAGTCGTGGTTCCTAACATGGTATCAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATCTTCAAGTGTCAAACAAAGAAGTTGCTAGCCTTGAAGATCTAGTCATAAGTGACTCATGTGTCGAACAAAGAGTGTACTTTGTTCGAGGGCTACATAGGCCTCAGGGGAGGCTCTATGGTGTACTTTGTTCGAGGGGAGGATTGTCGAGGACCGTTGAGGATTGTTGGGAGGGAGTCCCACATTGGCGGCTATTTAGGGAATGATCATGGGTTTAGAAGTAATGAATACATCTCCATTGGTACGAGGCTTTTTGAGGAAGCCCAAAGCAAAGACATGAAAGTTTATGCACAAAGTGGACAATATCATACCATTGTGGAGAACCGTAATTCCTAACAATACGTTAGTTCAAGCTCATGTGTCCTTTTTGATGGGGCCTTCTTCATGAAATGAATGTATTTTTTCAGTTGTGTTGATAACTTGAGATATACTGATAAAAACGAGCAAAACAACCTAGGCGGTGGGGAGGACCCTCGGCCAGAAAAACGACAAAAGAATTTCATAGCATTCTATACTACAAGTTTTTTTTTTTTGAACTTAATTTCATAACTGCCTCAGTTTTATTCTGCTTCCCTGTAGATTAATGAGTCGAAGCTATCTTTTGTAGCAGTTGCAGAAGCAACCCCGCTTGTAAGTGCATTAGCTTCAATTGAAACCGAGTCTGGTGGGCTTTTGGTCGTCGGACCTGAAGGAGGTACATTTTATGAGAGTTTTTCTTTACAAGAGGTTTTTAGGGTAGCCGAGTTTTTATCAAGCAAAATGAAAGAATAAACAAAACGAGTGCAACTCCGAAACTTTACATGAGAGTAAATGAATGAAATCCTCCCTTTTCGAGTCGAAGTTATACAAGAAAAGAAAAAGAAAAACAAGCAAGCAAGCTATAAGAATGGCCTTCAATCCAAAAGAATTAAACAAATTAGAAAAAAATCTGGTTCACAGACGCCCATAAAGATGCATTTAACCTCACCTCCTCTAACAACTTCTCCACCCCTCTAAAAGTTTTACCATTCCTCTCGAGCCACATGCCTCGAGATTATTATTCTATCGTGGAAGAGAGACTTCATCAAGACCTCATCCATCGTTCTTTTTACCAAGAATTTGATCGTCATTGAAAATTACCTATGTTATCTATTGTTAATTGTCCACCTATACCCTCCACTAGTAGATATTGTCTGTTTTATCCCGTTACGTATTACCGTCAGCCTCACGGTTTTAAAATGCGTCTCCACACCTTATAAGGATGCTTTGTTCTCCTCTCTAACCGAGGTGGATCTCACAAATGTGGGCTGCCAGGTCATTTAAATATGCTAGTTAAATAAAATAGTACTTATCATTTAGTGCATTGCATTTTTCATCTTTTTTTTTTTTTTTTTTTTTACGTCTGCTCTTCTTCTTCTTCTTCTTCTTTAGACTTCACCGAAAAAGAGGTCAATATGATGAAAGAAGCAGGTGCAATTCCAGTTGGTCTTGGTCCATATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTGATGTTATGGTCTGACTCGAGAAGTTCTAATCGTTAATCTCTCTTTCAGGTTAGCCCTTGTCTGTTTATGTATTGATAAATCAAATTTTCCTGCATATCTATTTTGTTTTGTTTCAAGGATGAACTAAAAATAAGACAAATGGAATGGGTGCCCATGAAAAAGATTTTGAATGCAGTAAATGAATACAAGATGTACCTATATCAGGTTTCAATAATTTATAGAACAGAAGAAGCAAGAACGTAAGACCAGGATCGGATTTAAACCTTGAATATATTGCCCAGTGTAAGACGCGTTTTAAAAATCTTGAGGGAAAGTTTGAAATGGGAAAGTCCAAAGAGGACAATATCTGCTGATGGTGGGCTTAGACTATTACAAATGTTATCAGAGCCAGATACTGGATGGTGTGCCAACGAGGACACTGGGCCCCCAAGGAAAGTAGACTGTGAGATCCCACATCGGTCGGAGAGGAAAACAAAACATTCCTTATAAAGATATGGAAACGTCTCCCTAGTAGACACATTATAAAACCTTAAAGGAAAGTCCAAAGATAACAATATCTATTAGCGGTGGGTCTAGGATGTTACACCTAGAAATTTACCCTTCTTCCTATTGAATGGACAAAATTACATTCTCATCATATCGAGATCTCGAAAAACAACTAGCATCAGTTTATTGCTTCGTCTCTTCTCGACCTAATAGATGCTACTCATTTTTCTAAAACTCATTGGCCATATCAGACCTACCCATGAAAGTTAACCCATCCCAAACTCACCAACGTGACTTACAGTAAACAACCAGGACATTTCCCATTAGTTTTCACTTGTTTTAATTCTATTTACTGATTTACTGCAATGCCCCATGGTGAAATATGGTCTTAGAAGAACAATACTAACAATGTAAGGTAGTTTCTAGCATTATTTATTTAGGTTTGTAAGGTTAAAGGATTATTGTTCATACATAGTTATTGTCTTGCGTTTGCTAGATAGATCATGTAAACGATTCACCCAAGCTTGGGAGTTTCAACCTTTCTATGGTTTACAGGATATCATCAAGATCAGCACCATTTCTAAGCCTCAAAGTCGGAGCGTTTGAGGCACGAGGCATGTCGACAATTTGAGACATTCTACAAAATAACTTGGGCTCGGTTTGATAACCATTTCTTTTTTTAAGATTAAGAGCAGAAATACTACTTCTATCTATGTTTGTTATATCTACGTTCTAACCATATTTTCGAAATTCATGCACGTTTTGAAAAT

mRNA sequence

ATGGCGGTTGATATTGAGGAACGGCGAAGAGGGACGGCGGTGAACGAGCGGCAATGTTGGAAGCTTGAAAGCGTCACACCAGCGGCGATCCTCATGTTCCATAGTTGTTGTTCTTTGCAAATGCGAACTATAGGAGAAATACGACCTCAATTGACGGAGTTATTCAACCGTTCGTGTTTCAGAAGCTTCAGAGTTAGAGCTCTCTCGTCTTCATCTCTGGCTTCCTCGAATCAATCCCGCGGTGGTCTTCCTCGCTTCTTCTCCCAACTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAACGGACTCGACATTCTGGCAATGGAAGATCCAAAATCTGTTCTACCTCAAAGCACACAGTGGCATGTATTTGCAGCTTGTGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACAGAACTGGGTGCCAGTAGCGTAACTCCACTGCTAACAGAACGTTGCGCTACCATATCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAGTCTGAATTCTCCATTGAAGATTGATGGTCTTTTGCACATAATTAATGAGTCGAAGCTATCTTTTGTAGCAGTTGCAGAAGCAACCCCGCTTGTAAGTGCATTAGCTTCAATTGAAACCGAGTCTGGTGGGCTTTTGGTCGTCGGACCTGAAGGAGACTTCACCGAAAAAGAGGTCAATATGATGAAAGAAGCAGGTGCAATTCCAGTTGGTCTTGGTCCATATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTGATGATATCATCAAGATCAGCACCATTTCTAAGCCTCAAAGTCGGAGCGTTTGAGGCACGAGGCATGTCGACAATTTGAGACATTCTACAAAATAACTTGGGCTCGGTTTGATAACCATTTCTTTTTTTAAGATTAAGAGCAGAAATACTACTTCTATCTATGTTTGTTATATCTACGTTCTAACCATATTTTCGAAATTCATGCACGTTTTGAAAAT

Coding sequence (CDS)

ATGGCGGTTGATATTGAGGAACGGCGAAGAGGGACGGCGGTGAACGAGCGGCAATGTTGGAAGCTTGAAAGCGTCACACCAGCGGCGATCCTCATGTTCCATAGTTGTTGTTCTTTGCAAATGCGAACTATAGGAGAAATACGACCTCAATTGACGGAGTTATTCAACCGTTCGTGTTTCAGAAGCTTCAGAGTTAGAGCTCTCTCGTCTTCATCTCTGGCTTCCTCGAATCAATCCCGCGGTGGTCTTCCTCGCTTCTTCTCCCAACTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACGTTCGTGTCAACGGACTCGACATTCTGGCAATGGAAGATCCAAAATCTGTTCTACCTCAAAGCACACAGTGGCATGTATTTGCAGCTTGTGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACAGAACTGGGTGCCAGTAGCGTAACTCCACTGCTAACAGAACGTTGCGCTACCATATCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAGTCTGAATTCTCCATTGAAGATTGATGGTCTTTTGCACATAATTAATGAGTCGAAGCTATCTTTTGTAGCAGTTGCAGAAGCAACCCCGCTTGTAAGTGCATTAGCTTCAATTGAAACCGAGTCTGGTGGGCTTTTGGTCGTCGGACCTGAAGGAGACTTCACCGAAAAAGAGGTCAATATGATGAAAGAAGCAGGTGCAATTCCAGTTGGTCTTGGTCCATATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTGATGATATCATCAAGATCAGCACCATTTCTAAGCCTCAAAGTCGGAGCGTTTGAGGCACGAGGCATGTCGACAATTTGA

Protein sequence

MAVDIEERRRGTAVNERQCWKLESVTPAAILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQLFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLMISSRSAPFLSLKVGAFEARGMSTI

Homology

[Close]

BLAST of Carg16319 vs. NCBI nr
Match: XP_023553831.1 (uncharacterized protein LOC111811289 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553832.1 uncharacterized protein LOC111811289 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 500.4 bits (1287), Expect = 4.5e-138
Identity = 266/305 (87.21%), Postives = 267/305 (87.54%), Query Frame = 0


Query: 18  QCWKLESVTPAAILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSN 77
           QCWKLESVTPAAILMFHSC SLQMRTIG IRPQLTELFNRSCFRSFRVRALSSSSLASSN
Sbjct: 4   QCWKLESVTPAAILMFHSCSSLQMRTIGAIRPQLTELFNRSCFRSFRVRALSSSSLASSN 63

Query: 78  QSRGGLPRFFSQ---------------------------------LFNGNGGLVEGSIKN 137
           QSRGGLPRFFSQ                                 LFNGNGGLVEGSIKN
Sbjct: 64  QSRGGLPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN 123

Query: 138 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 197
           VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER
Sbjct: 124 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 183

Query: 198 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL 257
           CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKI GLLHIINESKLSFVAVAEATPL
Sbjct: 184 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIYGLLHIINESKLSFVAVAEATPL 243

Query: 258 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 290
           VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM
Sbjct: 244 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 303

[Close]

BLAST of Carg16319 vs. NCBI nr
Match: XP_022952195.1 (uncharacterized protein LOC111454941 [Cucurbita moschata])

HSP 1 Score: 497.3 bits (1279), Expect = 3.8e-137
Identity = 265/305 (86.89%), Postives = 266/305 (87.21%), Query Frame = 0


Query: 18  QCWKLESVTPAAILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSN 77
           QCWKLESVTPAAILMFHS  SLQMRTIG IRPQLTELFNRSCFRSF VRALSSSSLASSN
Sbjct: 4   QCWKLESVTPAAILMFHSSSSLQMRTIGAIRPQLTELFNRSCFRSFGVRALSSSSLASSN 63

Query: 78  QSRGGLPRFFSQ---------------------------------LFNGNGGLVEGSIKN 137
           QSRGGLPRFFSQ                                 LFNGNGGLVEGSIKN
Sbjct: 64  QSRGGLPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN 123

Query: 138 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 197
           VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER
Sbjct: 124 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 183

Query: 198 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL 257
           CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL
Sbjct: 184 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL 243

Query: 258 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 290
           VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM
Sbjct: 244 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 303

[Close]

BLAST of Carg16319 vs. NCBI nr
Match: XP_022972429.1 (uncharacterized protein LOC111470992 [Cucurbita maxima])

HSP 1 Score: 491.5 bits (1264), Expect = 2.1e-135
Identity = 261/305 (85.57%), Postives = 266/305 (87.21%), Query Frame = 0


Query: 18  QCWKLESVTPAAILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSN 77
           Q WKLESVTPAAILMFHSC SLQMRTIG IRPQLTELF+RSCFRSFRVRALSSSSLASSN
Sbjct: 4   QGWKLESVTPAAILMFHSCSSLQMRTIGAIRPQLTELFDRSCFRSFRVRALSSSSLASSN 63

Query: 78  QSRGGLPRFFSQ---------------------------------LFNGNGGLVEGSIKN 137
           QSRGGLPRFFSQ                                 LFNGNGGLVEGSIKN
Sbjct: 64  QSRGGLPRFFSQVLPSYKGDIIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN 123

Query: 138 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 197
           +RVNG+DILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER
Sbjct: 124 IRVNGIDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 183

Query: 198 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL 257
           CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL
Sbjct: 184 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL 243

Query: 258 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 290
           VSALASIETESGGLLVVGPEGDFTEKEVNM+KEAGAI VGLGPYRLRVETATVAILSTLM
Sbjct: 244 VSALASIETESGGLLVVGPEGDFTEKEVNMIKEAGAIAVGLGPYRLRVETATVAILSTLM 303

[Close]

BLAST of Carg16319 vs. NCBI nr
Match: XP_023553834.1 (uncharacterized protein LOC111811289 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441.0 bits (1133), Expect = 3.2e-120
Identity = 241/305 (79.02%), Postives = 249/305 (81.64%), Query Frame = 0


Query: 18  QCWKLESVTPAAILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSN 77
           QCWKLESVTPAAILMFHSC SLQMRTIG IRPQLTELFNRSCFRSFRVRALSSSSLASSN
Sbjct: 4   QCWKLESVTPAAILMFHSCSSLQMRTIGAIRPQLTELFNRSCFRSFRVRALSSSSLASSN 63

Query: 78  QSRGGLPRFFSQ---------------------------------LFNGNGGLVEGSIKN 137
           QSRGGLPRFFSQ                                 LFNGNGGLVEGSIKN
Sbjct: 64  QSRGGLPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN 123

Query: 138 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 197
           VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER
Sbjct: 124 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 183

Query: 198 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL 257
           CATISDNRVHRFERITLAATKQC+ + + S  +P + +  +    E   SF   AEATPL
Sbjct: 184 CATISDNRVHRFERITLAATKQCESVFK-SKTAPNESEFSI----EDLWSFAHFAEATPL 243

Query: 258 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 290
           VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM
Sbjct: 244 VSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLM 303

[Close]

BLAST of Carg16319 vs. NCBI nr
Match: XP_023553833.1 (uncharacterized protein LOC111811289 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.5 bits (1129), Expect = 9.4e-120
Identity = 242/306 (79.08%), Postives = 251/306 (82.03%), Query Frame = 0


Query: 18  QCWKLESVTPAAILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSN 77
           QCWKLESVTPAAILMFHSC SLQMRTIG IRPQLTELFNRSCFRSFRVRALSSSSLASSN
Sbjct: 4   QCWKLESVTPAAILMFHSCSSLQMRTIGAIRPQLTELFNRSCFRSFRVRALSSSSLASSN 63

Query: 78  QSRGGLPRFFSQ---------------------------------LFNGNGGLVEGSIKN 137
           QSRGGLPRFFSQ                                 LFNGNGGLVEGSIKN
Sbjct: 64  QSRGGLPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN 123

Query: 138 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 197
           VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER
Sbjct: 124 VRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 183

Query: 198 CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFV-AVAEATP 257
           CATISDNRVHRFERITLAATKQC+ + + S  +P + +  +    E   SF  +VAEATP
Sbjct: 184 CATISDNRVHRFERITLAATKQCESVFK-SKTAPNESEFSI----EDLWSFAHSVAEATP 243

Query: 258 LVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTL 290
           LVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTL
Sbjct: 244 LVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTL 303

[Close]

BLAST of Carg16319 vs. TAIR10
Match: AT1G50000.1 (methyltransferases)

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-72
Identity = 152/266 (57.14%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 58  SCFRSF-RVRALSSSSLASSNQSRGGLPRFFS---------------------------- 117
           S F+SF  V +   S L   NQSRGGLPRFFS                            
Sbjct: 27  SSFKSFATVSSSPPSDLNLRNQSRGGLPRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLK 86

Query: 118 -----QLFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRAD 177
                +LFNG GGLVEG I+++   G+D +A ED K +LPQ  QW VFAA GTLKGGRAD
Sbjct: 87  QEDRVELFNGKGGLVEGCIQSIDKTGVDFIAQEDQKVILPQGMQWQVFAAFGTLKGGRAD 146

Query: 178 WLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDG 237
           WL+EKCTELGASSVTPLLTER   IS+NRV R ER++ AA KQCQRLHQM LN P+K   
Sbjct: 147 WLIEKCTELGASSVTPLLTERSPIISENRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGT 206

Query: 238 LLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPV 290
           LL  I +SKL  VA AEA PL++A+ S   ES GLL+VGPEGDFT+KEV MM EAG   V
Sbjct: 207 LLDHILKSKLCLVATAEAKPLLNAVNSSAKESSGLLIVGPEGDFTKKEVEMMLEAGGTAV 266

[Close]

BLAST of Carg16319 vs. Swiss-Prot
Match: sp|O66552|RSME_AQUAE (Ribosomal RNA small subunit methyltransferase E OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rsmE PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-10
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 143 DWLVEKCTELGASSVTPLLTERCATISD---NRVHRFERITLAATKQCQRLHQMSLNSPL 202
           D +V + TELG  +  P+++ER     +    +  +++RI + A KQ +R   M +  P+
Sbjct: 87  DTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPV 146

Query: 203 KIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAG 262
           ++  L   I ES+ + +       +     ++E ++   +VVGPEG F+++E  +++E G
Sbjct: 147 RLSDL---IPESEENIILDNFYEGVKPKDVNLEAKTYS-VVVGPEGGFSKRESQILREKG 206

Query: 263 AIPVGLGPYRLRVETATVAILSTLM 285
              V L PY LR ETA V+I+S LM
Sbjct: 207 FKSVLLEPYTLRTETAVVSIVSILM 227

[Close]

BLAST of Carg16319 vs. Swiss-Prot
Match: sp|P72667|RSME_SYNY3 (Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmE PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-10
Identity = 54/198 (27.27%), Postives = 92/198 (46.46%), Query Frame = 0


Query: 90  LFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKC 149
           + +G GG+    + ++      +L     ++ LP      V  A    KG   + ++  C
Sbjct: 104 VLDGGGGVWRAQLNDLAHGTAQLLETVSEQNELPLP----VTLAIALPKGSGFEEIIRPC 163

Query: 150 TELGASSVTPLLTER-CATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLH-I 209
           TELGA++  PLLTER     S N++ R++RI   A +Q +R     + +PL     +  +
Sbjct: 164 TELGATAFQPLLTERTLLKPSQNKLERWQRIVTEAAEQSERQWLPPVAAPLTFGQFVEKV 223

Query: 210 INESKLSFVAVAEA-TPLVSA-LASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIPVGL 269
                L+ + V    +P++ A L      +  +L  GPEG +T+ E+++    G  PV L
Sbjct: 224 AGPETLALLCVTRLNSPMLGAYLKQSNLPAQIVLATGPEGGWTDNEISLAIAKGFQPVSL 283

Query: 270 GPYRLRVETATVAILSTL 284
           G   LR  TA    L+ +
Sbjct: 284 GKRILRAVTAPTVALAQI 297

[Close]

BLAST of Carg16319 vs. Swiss-Prot
Match: sp|P54461|RSME_BACSU (Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmE PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.4e-10
Identity = 51/165 (30.91%), Postives = 77/165 (46.67%), Query Frame = 0


Query: 130 VFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRV-----HRFERITLAAT 189
           V+ A G  KG + +W+++K TELGA +  P    R     D++       R+ +I   A 
Sbjct: 81  VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAA 140

Query: 190 KQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPL--VSALASIETE----SGGL 249
           +Q  R     +        LL  + +     VA  E++    +SA ++I +     S  L
Sbjct: 141 EQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLL 200

Query: 250 LVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTL 284
           +V GPEG  TE EV  + E   +  GLGP  LR ETA +  LS +
Sbjct: 201 IVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245

[Close]

BLAST of Carg16319 vs. Swiss-Prot
Match: sp|Q8K9E4|RSME_BUCAP (Ribosomal RNA small subunit methyltransferase E OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=rsmE PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-09
Identity = 50/203 (24.63%), Postives = 95/203 (46.80%), Query Frame = 0


Query: 89  QLFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEK 148
           ++FN    +    I  +  + ++I+ ++     L      H+       K  + ++ ++K
Sbjct: 43  EIFNNTNYIFFSEILEINNHTIEIIILKKQIKNLESPLLIHLGQVIS--KNEKMNFSIQK 102

Query: 149 CTELGASSVTPLLTERC------ATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKID 208
             ELG +++TPL +E C            ++H +E I +++ +QC R +   + +P  I 
Sbjct: 103 SVELGVNTITPLFSEYCNFQNKLICFPKKKIH-WENIVISSCEQCHRNNIPEIKNPEYIL 162

Query: 209 GLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAIP 268
                  E++   V    AT  ++ L   E  +   L++G EG F+  E+  + + G IP
Sbjct: 163 PWCKRTYENETKIVFSPSATFTINELP--EKINCVRLLIGSEGGFSFLEIEKIIQYGFIP 222

Query: 269 VGLGPYRLRVETATVAILSTLMI 286
           + LGP  LR ETA +A ++ L I
Sbjct: 223 IKLGPRILRTETAVIAAITALQI 240

[Close]

BLAST of Carg16319 vs. Swiss-Prot
Match: sp|P44627|RSME_HAEIN (Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rsmE PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-09
Identity = 54/207 (26.09%), Postives = 100/207 (48.31%), Query Frame = 0


Query: 89  QLFNGN-----GGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRAD 148
           +LF+G+       ++E + K+V+V   +IL  E    +  + +   +       +G R +
Sbjct: 41  ELFDGSNHIYPAKIIESNKKSVKV---EILGRE----LADKESHLKIHLGQVISRGERME 100

Query: 149 WLVEKCTELGASSVTPLLTERC-----ATISDNRVHRFERITLAATKQCQRLHQMSLNSP 208
           + ++K  ELG + +TPL +ERC     A   D ++ ++++I +AA +QC R     +   
Sbjct: 101 FTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPL 160

Query: 209 LKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEA 268
           +K+       N+  L       A   +  L +I    G  L++G EG  + +E+   ++ 
Sbjct: 161 MKLQDWC-AENDGALKLNLHPRAHYSIKTLPTIPA-GGVRLLIGSEGGLSAQEIAQTEQQ 220

Query: 269 GAIPVGLGPYRLRVETATVAILSTLMI 286
           G   + LG   LR ETA++A +S L I
Sbjct: 221 GFTEILLGKRVLRTETASLAAISALQI 238

[Close]

BLAST of Carg16319 vs. TrEMBL
Match: tr|A0A1S3BZZ7|A0A1S3BZZ7_CUCME (ribosomal RNA small subunit methyltransferase E OS=Cucumis melo OX=3656 GN=LOC103495322 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 9.9e-118
Identity = 231/291 (79.38%), Postives = 241/291 (82.82%), Query Frame = 0


Query: 32  MFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQ-- 91
           MFHSCC  QMRTIG  RPQLT+L   S  RSF+VRALSSSSL SSNQSRGGLPRFFSQ  
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 92  -------------------------------LFNGNGGLVEGSIKNVRVNGLDILAMEDP 151
                                          LFNGNGGLVEGSIKNVRVNGLDILAME+P
Sbjct: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 152 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFER 211
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRVHRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 212 ITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGL 271
           ITLAATKQCQRLHQM+LNSPLKIDGLL +INE+KLSFVAVAEATPLVSALAS + ESGGL
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGL 240

Query: 272 LVVGPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLMISSRS 290
           LV+GPEGDFTEKEV+MMKEAGAI VGLGPYRLRVETATVAILSTLM+ S S
Sbjct: 241 LVIGPEGDFTEKEVSMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDS 291

[Close]

BLAST of Carg16319 vs. TrEMBL
Match: tr|A0A2H5P8T1|A0A2H5P8T1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_114290 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.5e-85
Identity = 181/329 (55.02%), Postives = 223/329 (67.78%), Query Frame = 0


Query: 2   AVDIEERRRGTAVNERQCWKL-----ESVTPAAILMFHSCCSLQMRTIGE--IRPQLTEL 61
           AVD++E +R     E + W L      SV      ++ + C L     G+  +RP+  +L
Sbjct: 137 AVDLKEMKRD---QELKGWALFRQPRLSVVNVEKKVWDTVCDLGGGFDGDAAVRPRFVQL 196

Query: 62  FNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQ------------------------- 121
            NR   +   +RA SSSS   +NQSRGGLPRFFSQ                         
Sbjct: 197 LNRPSLKPLSLRAFSSSSSDYANQSRGGLPRFFSQVLPPSKAGGIVRVEGDEFWHMTKVL 256

Query: 122 ---------LFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGG 181
                    LFNG GGL+EG I+ +   GLD++A+EDPK VLPQ TQW+VFAA GTLKGG
Sbjct: 257 RLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDPKLVLPQHTQWNVFAAFGTLKGG 316

Query: 182 RADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATKQCQRLHQMSLNSPLK 241
           RADWLVEKCTELGA SVTPLLTER  +IS+NRV R ER+ LAATKQCQRLH+M LN P+K
Sbjct: 317 RADWLVEKCTELGAQSVTPLLTERSPSISENRVDRLERVILAATKQCQRLHEMVLNPPMK 376

Query: 242 IDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGA 290
           IDGLL ++++SKL+FVA+AEATPLV+AL+S   ES GL++VGPEGDFTEKEVN + EAGA
Sbjct: 377 IDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGA 436

[Close]

BLAST of Carg16319 vs. TrEMBL
Match: tr|V4SG52|V4SG52_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030269mg PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 177/328 (53.96%), Postives = 219/328 (66.77%), Query Frame = 0


Query: 2   AVDIEERRRGTAVNERQCWKL-----ESVTPAAILMFHSCCSLQMRTIGE--IRPQLTEL 61
           AVD++E +R     E + W L      SV      ++   C L     G+  +RP+  + 
Sbjct: 96  AVDLKEMKRD---QELKGWALFRQPRLSVVNVEKKVWDRVCDLGGGFDGDAAVRPRFVQF 155

Query: 62  FNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQ------------------------- 121
            NR   +   +RA SSSS   +NQSRGG+PRFFSQ                         
Sbjct: 156 LNRPSLKPLSLRAFSSSSSDYANQSRGGIPRFFSQVLPSSKGGIVRVEGDEFWHMTKVLR 215

Query: 122 --------LFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGR 181
                   LFNG GGL+EG I+ +   GLD++A+ED K VLPQ TQW+VFAA GTLKGGR
Sbjct: 216 LSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFGTLKGGR 275

Query: 182 ADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKI 241
           ADWLVEKCTELGA SVTPLLTE   +IS+NRV R ER+ LAATKQCQRLH+M LN P+KI
Sbjct: 276 ADWLVEKCTELGAQSVTPLLTEHSPSISENRVDRLERVILAATKQCQRLHEMVLNPPMKI 335

Query: 242 DGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMMKEAGAI 290
           DGLL ++++SKL+FVA+AEATPLV+AL+S   ES GL++VGPEGDFTEKEVN + EAGA 
Sbjct: 336 DGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKIVEAGAT 395

[Close]

BLAST of Carg16319 vs. TrEMBL
Match: tr|M5W4K3|M5W4K3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G149200 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.1e-82
Identity = 173/288 (60.07%), Postives = 209/288 (72.57%), Query Frame = 0


Query: 41  MRTIGEIRPQLTELFNRS----CFRSFRVRALSSSSLAS--SNQSRGGLPRFFS------ 100
           M+T+  IRP+   L++ +      R+   RA SSSS +S  SNQSRGGLPRFFS      
Sbjct: 1   MQTLTPIRPRFARLWSLNPSSLSIRTLSPRAFSSSSSSSDYSNQSRGGLPRFFSELLPTS 60

Query: 101 ---------------------------QLFNGNGGLVEGSIKNVRVNGLDILAMEDPKSV 160
                                      +LFNG GGL++G I++V  +GLD +A+EDPKSV
Sbjct: 61  KGGIVRVQGDEFWHMTKVLRLRTNDRVELFNGKGGLIQGLIQSVDRSGLDFVALEDPKSV 120

Query: 161 LPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITL 220
           LPQSTQWHVFAA GTLKGGRADWLVEKCTELGASS+TPLLTER  T+S+NR+ R +R+ +
Sbjct: 121 LPQSTQWHVFAAFGTLKGGRADWLVEKCTELGASSLTPLLTERSPTVSENRLDRLQRVNV 180

Query: 221 AATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVV 280
           AA KQCQRLH+M LN P KI+GLL ++ ESKL+F+AVAE TPLVSAL    TESGGL+VV
Sbjct: 181 AAAKQCQRLHEMILNPPKKINGLLPLVAESKLAFLAVAEGTPLVSALTLSGTESGGLIVV 240

Query: 281 GPEGDFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLMISSRS 290
           GPEGDFTEKEVN + +AGAI VGLGP+RLRVETATVA+L+TLM+ S S
Sbjct: 241 GPEGDFTEKEVNELMQAGAISVGLGPHRLRVETATVALLATLMLWSDS 288

[Close]

BLAST of Carg16319 vs. TrEMBL
Match: tr|A0A061E1J5|A0A061E1J5_THECC (Methyltransferases isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_007256 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 168/284 (59.15%), Postives = 205/284 (72.18%), Query Frame = 0


Query: 41  MRTIGEIRPQLTELFNRSCF-RSFRVRALSSSSLAS-SNQSRGGLPRFFS---------- 100
           M+T+G +RP+ TEL  R    + F +RA SS+  A+ +NQSRGGL RFFS          
Sbjct: 1   MQTLGTLRPRFTELLKRPWLTKPFNLRAFSSTPPAAYTNQSRGGLRRFFSETLPSSKGGV 60

Query: 101 -----------------------QLFNGNGGLVEGSIKNVRVNGLDILAMEDPKSVLPQS 160
                                  +LFNG GGLVEG I+N+    +D +A+E+PK VLPQS
Sbjct: 61  IRVQGDEFWHMTKVLRLKTDDRIELFNGKGGLVEGCIQNIDRTAIDFVALEEPKLVLPQS 120

Query: 161 TQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATK 220
            QWHVFAA G+LKGGRADWLVEKCTELGA+SVTPLLTER + I+DNRV R +R+ LAATK
Sbjct: 121 -QWHVFAAFGSLKGGRADWLVEKCTELGATSVTPLLTERSSVIADNRVERLQRVILAATK 180

Query: 221 QCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEG 280
           QCQRLH+M LN P KID L+ ++ +SKLSF+A+AEATPLV AL S  TES GL++VGPEG
Sbjct: 181 QCQRLHEMKLNHPTKIDNLVPLVAKSKLSFIAIAEATPLVGALTSTRTESSGLIIVGPEG 240

Query: 281 DFTEKEVNMMKEAGAIPVGLGPYRLRVETATVAILSTLMISSRS 290
           DFTEKEVNM+ EAG+  VGLGP+RLRVETAT+AIL+TLM+ S S
Sbjct: 241 DFTEKEVNMIIEAGSTAVGLGPHRLRVETATIAILATLMLWSDS 283

The following BLAST results are available for this feature:

BLAST of Carg16319 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553831.1	4.5e-138	87.21	uncharacterized protein LOC111811289 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022952195.1	3.8e-137	86.89	uncharacterized protein LOC111454941 [Cucurbita moschata]	[more]
XP_022972429.1	2.1e-135	85.57	uncharacterized protein LOC111470992 [Cucurbita maxima]	[more]
XP_023553834.1	3.2e-120	79.02	uncharacterized protein LOC111811289 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023553833.1	9.4e-120	79.08	uncharacterized protein LOC111811289 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg16319 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50000.1	1.4e-72	57.14	methyltransferases	[more]

BLAST of Carg16319 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O66552\|RSME_AQUAE	4.1e-10	31.72	Ribosomal RNA small subunit methyltransferase E OS=Aquifex aeolicus (strain VF5)...	[more]
sp\|P72667\|RSME_SYNY3	4.1e-10	27.27	Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC...	[more]
sp\|P54461\|RSME_BACSU	5.4e-10	30.91	Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168...	[more]
sp\|Q8K9E4\|RSME_BUCAP	2.7e-09	24.63	Ribosomal RNA small subunit methyltransferase E OS=Buchnera aphidicola subsp. Sc...	[more]
sp\|P44627\|RSME_HAEIN	3.5e-09	26.09	Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strai...	[more]

BLAST of Carg16319 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZZ7\|A0A1S3BZZ7_CUCME	9.9e-118	79.38	ribosomal RNA small subunit methyltransferase E OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2H5P8T1\|A0A2H5P8T1_CITUN	6.5e-85	55.02	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_114290 PE=4 SV=1	[more]
tr\|V4SG52\|V4SG52_9ROSI	2.3e-82	53.96	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030269mg PE=4 ...	[more]
tr\|M5W4K3\|M5W4K3_PRUPE	5.1e-82	60.07	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G149200 PE=4 SV=1	[more]
tr\|A0A061E1J5\|A0A061E1J5_THECC	2.2e-80	59.15	Methyltransferases isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_007256 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR029028	Alpha/beta_knot_MTases
IPR029026	tRNA_m1G_MTases_N
IPR006700	rRNA_ssu_MeTrfase-E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16319-RA	Carg16319-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006700	Ribosomal RNA small subunit methyltransferase E	PFAM	PF04452	Methyltrans_RNA	coord: 89..284 e-value: 1.2E-41 score: 142.5
IPR006700	Ribosomal RNA small subunit methyltransferase E	TIGRFAM	TIGR00046	TIGR00046	coord: 126..285 e-value: 1.7E-31 score: 107.3
IPR006700	Ribosomal RNA small subunit methyltransferase E	PANTHER	PTHR30027	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E	coord: 89..289
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	G3DSA:3.40.1280.10		coord: 87..292 e-value: 2.2E-48 score: 166.3
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	SSF75217	alpha/beta knot	coord: 126..285

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16319	Cla001613	Watermelon (97103) v1	carwmB0455
Carg16319	Csa7G070790	Cucumber (Chinese Long) v2	carcuB0487
Carg16319	MELO3C018530	Melon (DHL92) v3.5.1	carmeB0460
Carg16319	ClCG02G007120	Watermelon (Charleston Gray)	carwcgB0445
Carg16319	CSPI07G06740	Wild cucumber (PI 183967)	carcpiB0493
Carg16319	Cucsa.219040	Cucumber (Gy14) v1	carcgyB0524
Carg16319	CmaCh19G005410	Cucurbita maxima (Rimu)	carcmaB0632
Carg16319	CmoCh19G005550	Cucurbita moschata (Rifu)	carcmoB0615
Carg16319	Lsi03G005980	Bottle gourd (USVL1VR-Ls)	carlsiB411
Carg16319	Cp4.1LG15g04260	Cucurbita pepo (Zucchini)	carcpeB0637
Carg16319	MELO3C018530.2	Melon (DHL92) v3.6.1	carmedB0463
Carg16319	CsaV3_7G007700	Cucumber (Chinese Long) v3	carcucB0490
Carg16319	Cla97C02G033960	Watermelon (97103) v2	carwmbB0477

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16319	Silver-seed gourd	carcarB402
Carg16319	Silver-seed gourd	carcarB456
Carg16319	Cucumber (Gy14) v2	carcgybB0464
Carg16319	Cucurbita maxima (Rimu)	carcmaB0630
Carg16319	Cucurbita maxima (Rimu)	carcmaB0634
Carg16319	Cucurbita moschata (Rifu)	carcmoB0612
Carg16319	Cucurbita moschata (Rifu)	carcmoB0616
Carg16319	Cucurbita pepo (Zucchini)	carcpeB0639
Carg16319	Watermelon (97103) v2	carwmbB0480
Carg16319	Wax gourd	carwgoB0552