Cla001613 (gene) Watermelon (97103) v1

Overview
NameCla001613
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRibosomal RNA small subunit methyltransferase E (AHRD V1 ***- Q6E297_ARATH); contains Interpro domain(s) IPR006700 Ribosomal RNA small subunit methyltransferase E
LocationChr2 : 8168133 .. 8171419 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAAAGTGTTGAGGTTGAAGACTGATGATAGGTACTACTTTTAATAGTCAACATCGTTTACTGTTATCTTGACATGTGGGTTTCTGGCTGGATTCTTTTCTTTCTTTATCTGTTTGTTATCTTCATATAATTGGATGTAAATTCAAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTAGAAGGGAGCATAAAGAACATTCGTGTCAATGGGCTTGACATTCTGGCTATGGAAGATCCAAAATCTGTTTTACCCCAAAGCACACAATGGCATGTATTTGCAGCCTGCGGTGAGATTCTTATGAGGAATCATTAAATGTTTACTGCATCCTGTGGCATGGTAACTAATATGTTTCTGTTTAGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACGGTAAGTAAATGTAGACTAAGACGTTGCAAATGAGAATTTTTGCTTCCTAATTTTGTTGCTGCTCTTTTCACTCTATTTAGGAACTGGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATCTCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTGAGTCAGTATTCAAGTTAAGTTTCTTCACCTCCGGAGTGGGAACTTGAGACAGTTCAATTTGGCTTGTTGGTCATTGTCTAATTACGTTTGCATCCTTCATCGCAGGTCAAAGACTCCACCAAATGAATCTGAATTCTCCATTGAAATTTGATGGTCTTTTGCACCTTGTGAGTTGCAATACAACTTTGTTCCAATACTTTCTTGACCTTTGAGCTTGGCTTGGCTATCATAGAAAAAGGTTCCCTCGTGCAAATAAAAAAAATCGTAAAAGAATTGTGTACAATTGTGATAATTTAAGAATTGAGTATATTTCTACAACAAATGATCAAGTACTTCTTGTACTAGTGCCTAGCTGAAGTGGTTACATTTCAGTTTTGATGGTTTTCTTGAAATTTTCAATTTTCTGAGATTCAAGGTTGTAGATCCATCTTAGAAGTAATCATTATGATGTCCTCTTGATGTGGCCTTTTTTATCCATGAATGTTCTTTTTTTTTTTTAGAAATTATGTTGATAAGAACCCGAGACATATTGATAAAAAGGAGAAAAACAGCCTAGGAGCCAGGTAGAGATAACCCCGGCCTGAAGAAACTGTCAAGAATTGCATAGCATTTTATTTTACAAGGTTTTTTCTCGTTAACTTAAATTCATAACTGCTTTGGTTTTATTTTGTTCCATGTAGATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCGCTTGTAAGTACATTAGCTTCAACAGAAATAGAGTCTGGTGGGCTTTTGGTTGTCGGACCTGAAGGAGGTATATTTTATATGATAGTCCTGCTTTCTAAAAATGAGTGCAATTTTCCTACAATATTTAAAAGAGGTTCTTAGTGTAGTTGTTGTTTCCACATTCTGATGAAGATGCATATTAAAGTCTTACAAACCTCAACTCACAATTTGATAGCTTCTGTCATGAATAACATTTTTTCGTTTTAATTTGTGATATTGGATTTGCAACTAAGGATTGAAATATCCGTCAACATAGGATGTGGTGAATGTATTTGTCATCAAGACTAATGGCCAAAAAATAGAGTAATAGCTCTTGATCTCCATACTTTTTACCACAAATTTTATTGCATGGAAAATCACCTATGTTATCTATTGTTAATCGTCCACCTATAGAATAATAAAGATAAACCCTTGAAAGCAGTGGTTAATTTGTTTGAGTTACCAGGTCATTTTAAACATGTTAGTTACATAAACTAGTACTTGAATGACTTTTCCCCTTCATGCTGGATAATATCTAGAAATCCTTTACTTCTCTTCAATCTTCATTAGTGCCTTGCATTTTTTTTTTTTTTTTTTAATTTTCTTCTTCAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCTAGCTATTAATCTCTCTTTCAGGTCAGCCCTCGTCTATTTCTGTATTTTCCTACATATCTAATTTTTTCAAGGATGAACTAAAAATTAAAACTTGAAAGTTGACGAATGAATGAAACACAAAGGAAATCAGTGGAAAAAGTATGAATGAGAAAATGAGAGTGATCATGTGATAGCTATAGAAGATTTTGAAGGTAAGATTAATTTTTATTTTGGTCCTTAAACTTTTAAATGTTGTCTTAAACCGTCAACTTCCAAAAGGTTCTATTTTTGTGTTTTTGGAAAAAAAATATCTAGTTATATTTTTGTGTTTTTGGAAAAAATATCTAGTGCAGTCATTATTTTAATTTCCCATTAATCATTTAATAGGAACTTAAGATCATTTGCAAACCTGACTCCTAGTCTACTATATGAGACTCGAAACACTATCTACATAAATATTTTAGGTAAATGCACACAAGATTGAATTAAGTTGATAGCAATGACAAGGCAAGTTTGAGGACTAAAAGAAAACATTTCATAGTTTATGGACCAAGACAGAAGAAGCAAGAAAGTAAGACTGAATATTTTACTTACAAATTTACCTTTTCTCTTGAATGGACAAAAGTACATTGCCATGGTGGAAAGATCTCGAAAAAAGACTAGTATCAGTTTATTGCTTCATCTCTTGACCTAATAGACACTACTCATTTTTTCTAATACTCTGCGCACATCAGACCTACTCATGAAAGTTAACCCATCCCAAACTCACGAACATGACTTACAGTTAAAAACCATGACGCATTCCACTAGTTTTCACTTGTTTTAGTTCTATTTATTGATTTATAGCAATGATCCATAGTGCGATACAGACTTAGAAGAGCAAAACTAACAATGAAGGTAGTTTCTAGCATTATTTCTTAAGGTGTGTAAGGTGAAAGGATTGTTGTTCACACGAAGTTATTGCTTGCTGTTTGCTTAAAAGATCAACTAAACAATTTGCCCAAACTTGTGGGAAGTTTAAATTTAAAAGAAGTTTCTACTTGGTAAAGTAGAATCCATTCTAGTTGCTTCAACTTTTTTACTGTTCACTGATCACAGGGTATCTCCAAAATCAGCACCATTGAAAAGCCTCAAAGTTGGAGCGTTTGCGGTTTTGGGGCATGTAATACCATTTGATGCATTCTACAAGGTGAATTCCATTTGA

mRNA sequence

ATGACTAAAGTGTTGAGGTTGAAGACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTAGAAGGGAGCATAAAGAACATTCGTGTCAATGGGCTTGACATTCTGGCTATGGAAGATCCAAAATCTGTTTTACCCCAAAGCACACAATGGCATGTATTTGCAGCCTGCGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACGGAACTGGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATCTCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTCCACCAAATGAATCTGAATTCTCCATTGAAATTTGATGGTCTTTTGCACCTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCGCTTGTAAGTACATTAGCTTCAACAGAAATAGAGTCTGGTGGGCTTTTGGTTGTCGGACCTGAAGGAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTCATGTTATGGGTATCTCCAAAATCAGCACCATTGAAAAGCCTCAAAGTTGGAGCGTTTGCGGTTTTGGGGCATGTAATACCATTTGATGCATTCTACAAGGTGAATTCCATTTGA

Coding sequence (CDS)

ATGACTAAAGTGTTGAGGTTGAAGACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTAGAAGGGAGCATAAAGAACATTCGTGTCAATGGGCTTGACATTCTGGCTATGGAAGATCCAAAATCTGTTTTACCCCAAAGCACACAATGGCATGTATTTGCAGCCTGCGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACGGAACTGGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATCTCTGATAACCGGGTACACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTCCACCAAATGAATCTGAATTCTCCATTGAAATTTGATGGTCTTTTGCACCTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCGCTTGTAAGTACATTAGCTTCAACAGAAATAGAGTCTGGTGGGCTTTTGGTTGTCGGACCTGAAGGAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTTGCAATCTTATCAACCCTCATGTTATGGGTATCTCCAAAATCAGCACCATTGAAAAGCCTCAAAGTTGGAGCGTTTGCGGTTTTGGGGCATGTAATACCATTTGATGCATTCTACAAGGTGAATTCCATTTGA

Protein sequence

MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNLNSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWVSPKSAPLKSLKVGAFAVLGHVIPFDAFYKVNSI
Homology
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BLAST of Cla001613 vs. Swiss-Prot
Match: RSME_RICCN (Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rsmE PE=3 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 9.1e-13
Identity = 57/208 (27.40%), Postives = 91/208 (43.75%), Query Frame = 1 

Query: 4   VLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLK 63
           VLRLK +D + LFNG  G     I +I  N L +   E  K    +ST   +  A   +K
Sbjct: 32  VLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSVRLKEQLKKPYTKST---LTLAVAIIK 91

Query: 64  GGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNLNSP 123
             +    +   T+LG + + PL+T  C   S N + R  +  + AT+Q +RL    +   
Sbjct: 92  QDKLMLAINMATQLGITKIIPLITRWCQFRSVN-IERLTKCVIEATEQSERLTPPIIEKA 151

Query: 124 LKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMMKE- 183
           +     L   N   L      +    +  ++S+   S   ++VGPEG FT  E+ ++   
Sbjct: 152 ITIQDYLKKNNNLMLYANEHEKEENSILRISSSLSNSDITIIVGPEGGFTNDELELLASY 211

Query: 184 AGAIAVGLGPYRLRVETATVAILSTLML 211
               ++ LG   LR ETA +  ++ + L
Sbjct: 212 KNTKSISLGSNILRAETAAITAIAQVRL 235

[Close]
BLAST of Cla001613 vs. Swiss-Prot
Match: RSME_SYNY3 (Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmE PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 58/212 (27.36%), Postives = 97/212 (45.75%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           + +VLRL+  D   + +G GG+    + ++      +L     ++ LP      V  A  
Sbjct: 90  LQRVLRLQKGDGFMVLDGGGGVWRAQLNDLAHGTAQLLETVSEQNELPLP----VTLAIA 149

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTER-CPTISDNRVHRFERITLAATKQCQRLHQMN 120
             KG   + ++  CTELGA++  PLLTER     S N++ R++RI   A +Q +R     
Sbjct: 150 LPKGSGFEEIIRPCTELGATAFQPLLTERTLLKPSQNKLERWQRIVTEAAEQSERQWLPP 209

Query: 121 LNSPLKFDGLLHLI--NETKLSFVAVAEATPLVST-LASTEIESGGLLVVGPEGDFTEKE 180
           + +PL F   +  +   ET          +P++   L  + + +  +L  GPEG +T+ E
Sbjct: 210 VAAPLTFGQFVEKVAGPETLALLCVTRLNSPMLGAYLKQSNLPAQIVLATGPEGGWTDNE 269

Query: 181 VNMMKEAGAIAVGLGPYRLRVETATVAILSTL 209
           +++    G   V LG   LR  TA    L+ +
Sbjct: 270 ISLAIAKGFQPVSLGKRILRAVTAPTVALAQI 297

[Close]
BLAST of Cla001613 vs. Swiss-Prot
Match: RSME_HAEIN (Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsmE PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 57/221 (25.79%), Postives = 109/221 (49.32%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGL-----VEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHV 60
           + +VLR+   +++ELF+G+  +     +E + K+++V   +IL  E    +  + +   +
Sbjct: 28  VARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKV---EILGRE----LADKESHLKI 87

Query: 61  FAACGTLKGGRADWLVEKCTELGASSVTPLLTERC-----PTISDNRVHRFERITLAATK 120
                  +G R ++ ++K  ELG + +TPL +ERC         D ++ ++++I +AA +
Sbjct: 88  HLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACE 147

Query: 121 QCQRLHQMNLNSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGL-LVVGPE 180
           QC R     +   +K        N+  L       A   + TL +  I +GG+ L++G E
Sbjct: 148 QCGRNIVPEIRPLMKLQDWC-AENDGALKLNLHPRAHYSIKTLPT--IPAGGVRLLIGSE 207

Query: 181 GDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLML 211
           G  + +E+   ++ G   + LG   LR ETA++A +S L +
Sbjct: 208 GGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQI 238

[Close]
BLAST of Cla001613 vs. Swiss-Prot
Match: RSME_BACSU (Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168) GN=rsmE PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 59/221 (26.70%), Postives = 99/221 (44.80%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAME--DPKSVLPQSTQWHVFAA 60
           +  V+R+   D++   + +G   +  ++++  + +  L +E  +    LP      V+ A
Sbjct: 29  IVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELPIK----VYIA 88

Query: 61  CGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV-----HRFERITLAATKQCQ 120
            G  KG + +W+++K TELGA +  P    R     D++       R+ +I   A +Q  
Sbjct: 89  SGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSY 148

Query: 121 RLHQMNLNSPLKFDGLLHLINETKLSFVAVAEATP-----LVSTLASTEIESGGLLVV-G 180
           R     +     F  LL  + +     VA  E++        S + S+  +   LL+V G
Sbjct: 149 RNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFG 208

Query: 181 PEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTL 209
           PEG  TE EV  + E   +  GLGP  LR ETA +  LS +
Sbjct: 209 PEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245

[Close]
BLAST of Cla001613 vs. Swiss-Prot
Match: RSME_AQUAE (Ribosomal RNA small subunit methyltransferase E OS=Aquifex aeolicus (strain VF5) GN=rsmE PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 1 

Query: 68  DWLVEKCTELGASSVTPLLTERCPTISD---NRVHRFERITLAATKQCQRLHQMNLNSPL 127
           D +V + TELG  +  P+++ER     +    +  +++RI + A KQ +R   M +  P+
Sbjct: 87  DTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPV 146

Query: 128 KFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMMKEAG 187
           +   L+    E  +         P    L +        +VVGPEG F+++E  +++E G
Sbjct: 147 RLSDLIPESEENIILDNFYEGVKPKDVNLEAKTYS----VVVGPEGGFSKRESQILREKG 206

Query: 188 AIAVGLGPYRLRVETATVAILSTLM 210
             +V L PY LR ETA V+I+S LM
Sbjct: 207 FKSVLLEPYTLRTETAVVSIVSILM 227

[Close]
BLAST of Cla001613 vs. TrEMBL
Match: M5W4K3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009413mg PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 5.3e-84
Identity = 155/211 (73.46%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRL+T+DRVELFNG GGL++G I+++  +GLD +A+EDPKSVLPQSTQWHVFAA G
Sbjct: 75  MTKVLRLRTNDRVELFNGKGGLIQGLIQSVDRSGLDFVALEDPKSVLPQSTQWHVFAAFG 134

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGASS+TPLLTER PT+S+NR+ R +R+ +AA KQCQRLH+M L
Sbjct: 135 TLKGGRADWLVEKCTELGASSLTPLLTERSPTVSENRLDRLQRVNVAAAKQCQRLHEMIL 194

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P K +GLL L+ E+KL+F+AVAE TPLVS L  +  ESGGL+VVGPEGDFTEKEVN +
Sbjct: 195 NPPKKINGLLPLVAESKLAFLAVAEGTPLVSALTLSGTESGGLIVVGPEGDFTEKEVNEL 254

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLW 212
            +AGAI+VGLGP+RLRVETATVA+L+TLMLW
Sbjct: 255 MQAGAISVGLGPHRLRVETATVALLATLMLW 285

[Close]
BLAST of Cla001613 vs. TrEMBL
Match: A0A0D2PMD5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G019500 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-82
Identity = 153/211 (72.51%), Postives = 180/211 (85.31%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRLKTDDRVELFNG GGLVEG I+NI  + +D +A+EDPK VLPQ+ QWH+FAA G
Sbjct: 71  MTKVLRLKTDDRVELFNGKGGLVEGFIQNIDRSSIDFVALEDPKLVLPQTPQWHIFAAFG 130

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           +LKGGRADWLVEKCTELGASSVTPLLT+R  TISDNRV R +R+ LAA KQCQRLH+M L
Sbjct: 131 SLKGGRADWLVEKCTELGASSVTPLLTQRSSTISDNRVERLQRVILAAAKQCQRLHEMKL 190

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P+K D L+ L+ ++K SF+A+AE TPLVS L ST  ES GL++VGPEGDFTEKEV+++
Sbjct: 191 NHPMKIDNLIPLVAKSKQSFIAIAEGTPLVSALTSTTKESSGLIIVGPEGDFTEKEVDLI 250

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLW 212
            EAGA AVGLGP+RLRVETAT+AIL+TL LW
Sbjct: 251 TEAGATAVGLGPHRLRVETATIAILATLTLW 281

[Close]
BLAST of Cla001613 vs. TrEMBL
Match: F6HBL6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00280 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.9e-82
Identity = 153/211 (72.51%), Postives = 178/211 (84.36%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRL  +DRVELFNG GGLVEGSI  I   GLD +A+EDPK VLPQS++WHVFAA G
Sbjct: 235 MTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFG 294

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELG SSVTPLLTER P+IS+NRV R +R+ LAA KQCQRLH+M L
Sbjct: 295 TLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTL 354

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P   D LL ++ ++KLS VAVAEATP+ S L S+  ES GL+++GPEGDFTEKE+NMM
Sbjct: 355 NPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGLMIIGPEGDFTEKELNMM 414

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLW 212
           +EAGA AVGLGP+RLRVETAT+A+L+TLMLW
Sbjct: 415 REAGATAVGLGPHRLRVETATIALLATLMLW 445

[Close]
BLAST of Cla001613 vs. TrEMBL
Match: V4SG52_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030269mg PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.8e-82
Identity = 155/219 (70.78%), Postives = 185/219 (84.47%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRL T+DRVELFNG GGL+EG I+ I   GLD++A+ED K VLPQ TQW+VFAA G
Sbjct: 207 MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDLKLVLPQHTQWNVFAAFG 266

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGA SVTPLLTE  P+IS+NRV R ER+ LAATKQCQRLH+M L
Sbjct: 267 TLKGGRADWLVEKCTELGAQSVTPLLTEHSPSISENRVDRLERVILAATKQCQRLHEMVL 326

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P+K DGLL L++++KL+FVA+AEATPLV+ L+S+  ES GL++VGPEGDFTEKEVN +
Sbjct: 327 NPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKI 386

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLWVSPKSAPL 220
            EAGA AVGLGP+RLRVETAT+A+L+TLML    +  P+
Sbjct: 387 VEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPI 425

[Close]
BLAST of Cla001613 vs. TrEMBL
Match: A0A0B0PV06_GOSAR (Ribosomal RNA small subunit methyltransferase E OS=Gossypium arboreum GN=F383_09325 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.4e-81
Identity = 151/211 (71.56%), Postives = 179/211 (84.83%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRLKTDDRVELFNG GGLVEG I+NI  + +D +A+EDPK VLPQ+ QWH+FAA G
Sbjct: 28  MTKVLRLKTDDRVELFNGKGGLVEGFIQNIDRSSIDFVALEDPKLVLPQTPQWHIFAAFG 87

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           +LKGGRADWLVEKCTELGASSVTPLLT+R  TISDNRV R +R+ LAA KQCQRLH+M L
Sbjct: 88  SLKGGRADWLVEKCTELGASSVTPLLTQRSSTISDNRVERLQRVILAAAKQCQRLHEMKL 147

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P+K D L+ L+ ++K SF+A+AE TPLVS L +T  E  GL++VGPEGDFTEKEV+++
Sbjct: 148 NHPMKIDNLIPLVAKSKQSFIAIAEGTPLVSALTATTKEPSGLIIVGPEGDFTEKEVDLI 207

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLW 212
            EAGA AVGLGP+RLRVETAT+AIL+TL LW
Sbjct: 208 TEAGATAVGLGPHRLRVETATIAILATLTLW 238

[Close]
BLAST of Cla001613 vs. NCBI nr
Match: gi|659110109|ref|XP_008455052.1| (PREDICTED: uncharacterized protein LOC103495322 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 2.3e-109
Identity = 203/215 (94.42%), Postives = 209/215 (97.21%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNGLDILAME+PKSVLPQSTQWHVFAACG
Sbjct: 78  MTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEPKSVLPQSTQWHVFAACG 137

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL
Sbjct: 138 TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 197

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           NSPLK DGLL LINETKLSFVAVAEATPLVS LAST+IESGGLLV+GPEGDFTEKEV+MM
Sbjct: 198 NSPLKIDGLLPLINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPEGDFTEKEVSMM 257

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLWVSPK 216
           KEAGAIAVGLGPYRLRVETATVAILSTLMLW   K
Sbjct: 258 KEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSK 292

[Close]
BLAST of Cla001613 vs. NCBI nr
Match: gi|778724803|ref|XP_004136932.2| (PREDICTED: uncharacterized protein LOC101213733 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 8.9e-109
Identity = 203/217 (93.55%), Postives = 208/217 (95.85%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGL+ILAME+PKSVLPQSTQWHVFAACG
Sbjct: 78  MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQSTQWHVFAACG 137

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV RFERI LAATKQCQRLHQMNL
Sbjct: 138 TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFERIALAATKQCQRLHQMNL 197

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           NSPLK DGLL  INETKLSFVAVAEATPLVS LAST+IESGGLLV+GPEGDFTEKEVNMM
Sbjct: 198 NSPLKIDGLLPFINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPEGDFTEKEVNMM 257

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLWVSPKSA 218
           KEAGAIAVGLGPYRLRVETATVAILSTLMLW   KS+
Sbjct: 258 KEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKSS 294

[Close]
BLAST of Cla001613 vs. NCBI nr
Match: gi|595793545|ref|XP_007200521.1| (hypothetical protein PRUPE_ppa009413mg [Prunus persica])

HSP 1 Score: 318.9 bits (816), Expect = 7.6e-84
Identity = 155/211 (73.46%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRL+T+DRVELFNG GGL++G I+++  +GLD +A+EDPKSVLPQSTQWHVFAA G
Sbjct: 75  MTKVLRLRTNDRVELFNGKGGLIQGLIQSVDRSGLDFVALEDPKSVLPQSTQWHVFAAFG 134

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGASS+TPLLTER PT+S+NR+ R +R+ +AA KQCQRLH+M L
Sbjct: 135 TLKGGRADWLVEKCTELGASSLTPLLTERSPTVSENRLDRLQRVNVAAAKQCQRLHEMIL 194

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P K +GLL L+ E+KL+F+AVAE TPLVS L  +  ESGGL+VVGPEGDFTEKEVN +
Sbjct: 195 NPPKKINGLLPLVAESKLAFLAVAEGTPLVSALTLSGTESGGLIVVGPEGDFTEKEVNEL 254

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLW 212
            +AGAI+VGLGP+RLRVETATVA+L+TLMLW
Sbjct: 255 MQAGAISVGLGPHRLRVETATVALLATLMLW 285

[Close]
BLAST of Cla001613 vs. NCBI nr
Match: gi|568867118|ref|XP_006486891.1| (PREDICTED: ribosomal RNA small subunit methyltransferase E [Citrus sinensis])

HSP 1 Score: 318.5 bits (815), Expect = 9.9e-84
Identity = 157/219 (71.69%), Postives = 187/219 (85.39%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRL T+DRVELFNG GGL+EG I+ I   GLD++A+EDPK VLPQ TQW+VFAA G
Sbjct: 70  MTKVLRLSTNDRVELFNGKGGLIEGCIQRIDRTGLDVVALEDPKLVLPQHTQWNVFAAFG 129

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGA SVTPLLTER P+IS+NRV R ER+ LAATKQCQRLH+M L
Sbjct: 130 TLKGGRADWLVEKCTELGAQSVTPLLTERSPSISENRVDRLERVILAATKQCQRLHEMVL 189

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P+K DGLL L++++KL+FVA+AEATPLV+ L+S+  ES GL++VGPEGDFTEKEVN +
Sbjct: 190 NPPMKIDGLLPLVSQSKLAFVAIAEATPLVTALSSSRNESSGLIIVGPEGDFTEKEVNKI 249

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLWVSPKSAPL 220
            EAGA AVGLGP+RLRVETAT+A+L+TLML    +  P+
Sbjct: 250 VEAGATAVGLGPHRLRVETATIALLATLMLCSDSQQMPI 288

[Close]
BLAST of Cla001613 vs. NCBI nr
Match: gi|645261383|ref|XP_008236267.1| (PREDICTED: uncharacterized protein LOC103335052 [Prunus mume])

HSP 1 Score: 315.1 bits (806), Expect = 1.1e-82
Identity = 153/211 (72.51%), Postives = 183/211 (86.73%), Query Frame = 1 

Query: 1   MTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACG 60
           MTKVLRL+T+DRVELFNG GGL++G I+++  +GLD LA+EDPKSVLPQSTQWHVFAA G
Sbjct: 73  MTKVLRLRTNDRVELFNGKGGLIQGLIQSVDRSGLDFLALEDPKSVLPQSTQWHVFAAFG 132

Query: 61  TLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCQRLHQMNL 120
           TLKGGRADWLVEKCTELGA S+TPLLTER PT+S+NR+ R +R+ +AA KQCQRLH+M L
Sbjct: 133 TLKGGRADWLVEKCTELGAGSLTPLLTERSPTVSENRLDRLQRVNMAAAKQCQRLHEMIL 192

Query: 121 NSPLKFDGLLHLINETKLSFVAVAEATPLVSTLASTEIESGGLLVVGPEGDFTEKEVNMM 180
           N P   +GLL L+ E+KL+ +AVAE TPLVS L S+  ES GL+VVGPEGDFTEKEVN +
Sbjct: 193 NPPTNINGLLPLVAESKLALLAVAEGTPLVSALTSSGTESSGLIVVGPEGDFTEKEVNEL 252

Query: 181 KEAGAIAVGLGPYRLRVETATVAILSTLMLW 212
            +AGAI+VGLGP+RLRVETATVA+L+TLMLW
Sbjct: 253 MQAGAISVGLGPHRLRVETATVALLATLMLW 283

The following BLAST results are available for this feature:
BLAST of Cla001613 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RSME_RICCN9.1e-1327.40Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain AT... [more]
RSME_SYNY31.2e-1227.36Ribosomal RNA small subunit methyltransferase E OS=Synechocystis sp. (strain PCC... [more]
RSME_HAEIN1.7e-1125.79Ribosomal RNA small subunit methyltransferase E OS=Haemophilus influenzae (strai... [more]
RSME_BACSU1.7e-1126.70Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168... [more]
RSME_AQUAE2.5e-1031.03Ribosomal RNA small subunit methyltransferase E OS=Aquifex aeolicus (strain VF5)... [more]
BLAST of Cla001613 vs. TrEMBL
Match NameE-valueIdentityDescription
M5W4K3_PRUPE5.3e-8473.46Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009413mg PE=4 SV=1[more]
A0A0D2PMD5_GOSRA1.7e-8272.51Uncharacterized protein OS=Gossypium raimondii GN=B456_008G019500 PE=4 SV=1[more]
F6HBL6_VITVI2.9e-8272.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00280 PE=4 SV=... [more]
V4SG52_9ROSI3.8e-8270.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030269mg PE=4 SV=1[more]
A0A0B0PV06_GOSAR1.4e-8171.56Ribosomal RNA small subunit methyltransferase E OS=Gossypium arboreum GN=F383_09... [more]
BLAST of Cla001613 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110109|ref|XP_008455052.1|2.3e-10994.42PREDICTED: uncharacterized protein LOC103495322 [Cucumis melo][more]
gi|778724803|ref|XP_004136932.2|8.9e-10993.55PREDICTED: uncharacterized protein LOC101213733 [Cucumis sativus][more]
gi|595793545|ref|XP_007200521.1|7.6e-8473.46hypothetical protein PRUPE_ppa009413mg [Prunus persica][more]
gi|568867118|ref|XP_006486891.1|9.9e-8471.69PREDICTED: ribosomal RNA small subunit methyltransferase E [Citrus sinensis][more]
gi|645261383|ref|XP_008236267.1|1.1e-8272.51PREDICTED: uncharacterized protein LOC103335052 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006700rRNA_ssu_MeTrfase-E
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0006364 rRNA processing
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016740 transferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU43339watermelon EST collection version 2.0transcribed_cluster
WMU43436watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001613Cla001613.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU43339WMU43339transcribed_cluster
WMU43436WMU43436transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006700Ribosomal RNA small subunit methyltransferase EPIRPIRSF015601MTase_slr0722coord: 1..213
score: 5.2
IPR006700Ribosomal RNA small subunit methyltransferase EPFAMPF04452Methyltrans_RNAcoord: 1..209
score: 1.1
IPR006700Ribosomal RNA small subunit methyltransferase ETIGRFAMsTIGR00046TIGR00046coord: 2..209
score: 8.1
NoneNo IPR availablePANTHERPTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Ecoord: 1..218
score: 5.1E
NoneNo IPR availablePANTHERPTHR30027:SF4RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE-RELATEDcoord: 1..218
score: 5.1E