CsaV3_7G006950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 4356407 .. 4357344 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGATTCCCTCTACAATAAAACCCAACCTCTAATTTAGATGGAAGTAATTCCTCCAAACTTTGCATGCATGAATTATACCCATGTAATGAGAACAAAAATCATAATCGAATCTCAATTTCGCTTTAATTACTTACATTGAATCATTATATGTGTTTTGATGATCTTTAATTGCATTTTTTGCATTGTTTAGTTGGTAATCCTTTAACTAATAAAACTTTTTGTGTACTTAAAAGATGGCCAACGCTATTCATCTATATAAAACCTCAAATAATCCAACTTCTAACTCAAACCCACATTACCATTCTTATTGTTAGTTCTATCAACAATGGCTCGTTTTACTCTTCTCATTGCGTTTGTTGCAACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTCCTCCTCCTCCATTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCAGGGCTCCCGGATTTCAACGTGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTTCATTTTTTGGCCCCAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCCACTAATCCTTCTCCTTGATCAGAAACTGAGTTTCATTCTCTAATAAACAGTACTCTCTCTTCTCTCTCTAGCTCTCTTTCTATGTGGGTTATTTGGTGGTATTGTTATGGATGAAAAATAATGAGACTTTTTGTTTAGTTTTTTCTTTTTTCGTCTAAGTTTTCATTGGAAGCTCAAGACGAAGAGTTGTCTCTTAATATGTAATCCTCAAAAACAGGGTGTGAAAGTGCACATTTGATTCCAAGCATTTGTGTGTTTGTCACTTTTTCCTGTTTATTTTGTGTGGAAATAATGATGTATTATTATATTATAATGCATGGAATAAGAATTTAGTATTGTTGTGTGTGCAAAACTATCCCTTTC

mRNA sequence

ATGGCTCGTTTTACTCTTCTCATTGCGTTTGTTGCAACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTCCTCCTCCTCCATTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCAGGGCTCCCGGATTTCAACGTGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTTCATTTTTTGGCCCCAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCCACTAATCCTTCTCCTTGA

Coding sequence (CDS)

ATGGCTCGTTTTACTCTTCTCATTGCGTTTGTTGCAACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTCCTCCTCCTCCATTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCAGGGCTCCCGGATTTCAACGTGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTTCATTTTTTGGCCCCAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCCACTAATCCTTCTCCTTGA

Protein sequence

MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPPFSFFGPNTPSSIFPNFPFFSPPTNPSP
Homology
[Close]
BLAST of CsaV3_7G006950 vs. NCBI nr
Match: KGN43761.1 (hypothetical protein Csa_7G066190 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MARFTLLIAFVXXXXXXXXXXXXXXXXXXXXXXXXLASDFPGLPDFNVPPFXXXXXXXXX 60
          MARFTLLIAFVXXXXXXXXXXXXXXXXXXXXXXXXLASDFPGLPDFNVPPFXXXXXXXXX
Sbjct: 1  MARFTLLIAFVXXXXXXXXXXXXXXXXXXXXXXXXLASDFPGLPDFNVPPFXXXXXXXXX 60

Query: 61 XXXXXPNTPSSIFPNFPFFSPPTNPSP 88
          XXXXXPNTPSSIFPNFPFFSPPTNPSP
Sbjct: 61 XXXXXPNTPSSIFPNFPFFSPPTNPSP 87

[Close]
BLAST of CsaV3_7G006950 vs. TrEMBL
Match: tr|A0A0A0K7G8|A0A0A0K7G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MARFTLLIAFVXXXXXXXXXXXXXXXXXXXXXXXXLASDFPGLPDFNVPPFXXXXXXXXX 60
          MARFTLLIAFVXXXXXXXXXXXXXXXXXXXXXXXXLASDFPGLPDFNVPPFXXXXXXXXX
Sbjct: 1  MARFTLLIAFVXXXXXXXXXXXXXXXXXXXXXXXXLASDFPGLPDFNVPPFXXXXXXXXX 60

Query: 61 XXXXXPNTPSSIFPNFPFFSPPTNPSP 88
          XXXXXPNTPSSIFPNFPFFSPPTNPSP
Sbjct: 61 XXXXXPNTPSSIFPNFPFFSPPTNPSP 87

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43761.12.0e-14100.00hypothetical protein Csa_7G066190 [Cucumis sativus][more]
BLAST of CsaV3_7G006950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7G8|A0A0A0K7G8_CUCSA1.3e-14100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006950.1CsaV3_7G006950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G006950CSPI07G05990Wild cucumber (PI 183967)cpicucB415
CsaV3_7G006950Cp4.1LG15g03760Cucurbita pepo (Zucchini)cpecucB0328
CsaV3_7G006950Cla012889Watermelon (97103) v1cucwmB587
CsaV3_7G006950MELO3C018597Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G006950ClCG09G015800Watermelon (Charleston Gray)cucwcgB535
CsaV3_7G006950Lsi03G007190Bottle gourd (USVL1VR-Ls)cuclsiB551
CsaV3_7G006950MELO3C018597.2Melon (DHL92) v3.6.1cucmedB536
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G006950Cucurbita moschata (Rifu)cmocucB0157
CsaV3_7G006950Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G006950Cucurbita moschata (Rifu)cmocucB0623
CsaV3_7G006950Cucurbita moschata (Rifu)cmocucB0630
CsaV3_7G006950Cucurbita pepo (Zucchini)cpecucB0323
CsaV3_7G006950Cucurbita pepo (Zucchini)cpecucB0866
CsaV3_7G006950Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G006950Wild cucumber (PI 183967)cpicucB252
CsaV3_7G006950Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G006950Melon (DHL92) v3.5.1cucmeB585
CsaV3_7G006950Melon (DHL92) v3.6.1cucmedB572
CsaV3_7G006950Watermelon (97103) v1cucwmB580
CsaV3_7G006950Watermelon (97103) v1cucwmB596
CsaV3_7G006950Watermelon (97103) v2cucwmbB581
CsaV3_7G006950Wax gourdcucwgoB686
CsaV3_7G006950Wax gourdcucwgoB700
CsaV3_7G006950Silver-seed gourdcarcucB0321
CsaV3_7G006950Silver-seed gourdcarcucB0323
CsaV3_7G006950Silver-seed gourdcarcucB0770
CsaV3_7G006950Cucumber (Gy14) v2cgybcucB348
CsaV3_7G006950Cucumber (Gy14) v1cgycucB342
CsaV3_7G006950Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G006950Cucurbita maxima (Rimu)cmacucB0180
CsaV3_7G006950Cucurbita maxima (Rimu)cmacucB0639
CsaV3_7G006950Cucurbita maxima (Rimu)cmacucB0644