Cla012889 (gene) Watermelon (97103) v1

Overview
NameCla012889
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 20178815 .. 20179069 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGTTCTACTCTTCTCATTGCTTTTGTTGGAACATTGCTTCTTTCAAGCTTGGGTTCTTCTTCTTCCTCCATTATGGTATCTCGCAAGCTTTTGGCTTCAAATTTTCCAGGGTTTCCTGATCTGAATATGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTACATTTTTTGGCCCCAATACTCCTTCTTCCTCCTTTCCCAACTTTCCATTTTTCTCTCCACCCATTAATCCTTCCCCTTGA

mRNA sequence

ATGCCTCGTTCTACTCTTCTCATTGCTTTTGTTGGAACATTGCTTCTTTCAAGCTTGGGTTCTTCTTCTTCCTCCATTATGGTATCTCGCAAGCTTTTGGCTTCAAATTTTCCAGGGTTTCCTGATCTGAATATGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTACATTTTTTGGCCCCAATACTCCTTCTTCCTCCTTTCCCAACTTTCCATTTTTCTCTCCACCCATTAATCCTTCCCCTTGA

Coding sequence (CDS)

ATGCCTCGTTCTACTCTTCTCATTGCTTTTGTTGGAACATTGCTTCTTTCAAGCTTGGGTTCTTCTTCTTCCTCCATTATGGTATCTCGCAAGCTTTTGGCTTCAAATTTTCCAGGGTTTCCTGATCTGAATATGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTACATTTTTTGGCCCCAATACTCCTTCTTCCTCCTTTCCCAACTTTCCATTTTTCTCTCCACCCATTAATCCTTCCCCTTGA

Protein sequence

MPRSTLLIAFVGTLLLSSLGSSSSSIMVSRKLLASNFPGFPDLNMPPFYPEFKLPPPFTFFGPNTPSSSFPNFPFFSPPINPSP
Homology
[Close]
BLAST of Cla012889 vs. TrEMBL
Match: A0A0A0K7G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066190 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-32
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 1 

Query: 1  MPRSTLLIAFVGTLLLSSLGSSSSS---IMVSRKLLASNFPGFPDLNMPPFYPEFKLPPP 60
          M R TLLIAFV TLLLSSL SSSSS   I+VSRKLLAS+FPG PD N+PPFYPEFKLPPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60

Query: 61 FTFFGPNTPSSSFPNFPFFSPPINPSP 85
          F+FFGPNTPSS FPNFPFFSPP NPSP
Sbjct: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 87

[Close]
BLAST of Cla012889 vs. NCBI nr
Match: gi|700188528|gb|KGN43761.1| (hypothetical protein Csa_7G066190 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 1 

Query: 1  MPRSTLLIAFVGTLLLSSLGSSSSS---IMVSRKLLASNFPGFPDLNMPPFYPEFKLPPP 60
          M R TLLIAFV TLLLSSL SSSSS   I+VSRKLLAS+FPG PD N+PPFYPEFKLPPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60

Query: 61 FTFFGPNTPSSSFPNFPFFSPPINPSP 85
          F+FFGPNTPSS FPNFPFFSPP NPSP
Sbjct: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 87

The following BLAST results are available for this feature:
BLAST of Cla012889 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7G8_CUCSA1.6e-3282.76Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066190 PE=4 SV=1[more]
BLAST of Cla012889 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188528|gb|KGN43761.1|2.3e-3282.76hypothetical protein Csa_7G066190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU08569watermelon EST collection version 2.0transcribed_cluster
WMU56947watermelon EST collection version 2.0transcribed_cluster
WMU58183watermelon EST collection version 2.0transcribed_cluster
WMU79107watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla012889Cla012889.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU56947WMU56947transcribed_cluster
WMU58183WMU58183transcribed_cluster
WMU79107WMU79107transcribed_cluster
WMU08569WMU08569transcribed_cluster