ClCG09G015800 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G015800
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	hydroxyproline-rich glycoprotein family protein LENGTH=124
Location	CG_Chr09 : 30716824 .. 30717078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTTCTACTCTTCTCATTGCTTTTGTTGGAACATTGCTTCTTTCAAGCTTGGGTTCTTCTTCTTCCTCCATTATGGTATCTCGCAAGCTTTTGGCTTCAAATTTTCCAGGGTTTCCTGATCTGAATATGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTACATTTTTTGGCCCCAATACTCCTTCTTCCTCCTTTCCCAACTTTCCATTTTTCTCTCCACCCATTAATCCTTCCCCTTGA

mRNA sequence

ATGCCTCGTTCTACTCTTCTCATTGCTTTTGTTGGAACATTGCTTCTTTCAAGCTTGGGTTCTTCTTCTTCCTCCATTATGGTATCTCGCAAGCTTTTGGCTTCAAATTTTCCAGGGTTTCCTGATCTGAATATGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTACATTTTTTGGCCCCAATACTCCTTCTTCCTCCTTTCCCAACTTTCCATTTTTCTCTCCACCCATTAATCCTTCCCCTTGA

Coding sequence (CDS)

ATGCCTCGTTCTACTCTTCTCATTGCTTTTGTTGGAACATTGCTTCTTTCAAGCTTGGGTTCTTCTTCTTCCTCCATTATGGTATCTCGCAAGCTTTTGGCTTCAAATTTTCCAGGGTTTCCTGATCTGAATATGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTACATTTTTTGGCCCCAATACTCCTTCTTCCTCCTTTCCCAACTTTCCATTTTTCTCTCCACCCATTAATCCTTCCCCTTGA

Protein sequence

MPRSTLLIAFVGTLLLSSLGSSSSSIMVSRKLLASNFPGFPDLNMPPFYPEFKLPPPFTFFGPNTPSSSFPNFPFFSPPINPSP

Homology

[Close]

BLAST of ClCG09G015800 vs. TrEMBL
Match: A0A0A0K7G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066190 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-32
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MPRSTLLIAFVGTLLLSSLGSSSSS---IMVSRKLLASNFPGFPDLNMPPFYPEFKLPPP 60
          M R TLLIAFV TLLLSSL SSSSS   I+VSRKLLAS+FPG PD N+PPFYPEFKLPPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60

Query: 61 FTFFGPNTPSSSFPNFPFFSPPINPSP 85
          F+FFGPNTPSS FPNFPFFSPP NPSP
Sbjct: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 87

[Close]

BLAST of ClCG09G015800 vs. NCBI nr
Match: gi|700188528|gb|KGN43761.1| (hypothetical protein Csa_7G066190 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MPRSTLLIAFVGTLLLSSLGSSSSS---IMVSRKLLASNFPGFPDLNMPPFYPEFKLPPP 60
          M R TLLIAFV TLLLSSL SSSSS   I+VSRKLLAS+FPG PD N+PPFYPEFKLPPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60

Query: 61 FTFFGPNTPSSSFPNFPFFSPPINPSP 85
          F+FFGPNTPSS FPNFPFFSPP NPSP
Sbjct: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 87

The following BLAST results are available for this feature:

BLAST of ClCG09G015800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7G8_CUCSA	1.6e-32	82.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066190 PE=4 SV=1	[more]

BLAST of ClCG09G015800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188528\|gb\|KGN43761.1\|	2.3e-32	82.76	hypothetical protein Csa_7G066190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G015800.1	ClCG09G015800.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G015800	CsaV3_7G006950	Cucumber (Chinese Long) v3	cucwcgB535

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G015800	Watermelon (97103) v2	wcgwmbB035
ClCG09G015800	Wax gourd	wcgwgoB033
ClCG09G015800	Cucumber (Gy14) v1	cgywcgB391
ClCG09G015800	Cucurbita maxima (Rimu)	cmawcgB075
ClCG09G015800	Cucurbita maxima (Rimu)	cmawcgB442
ClCG09G015800	Cucurbita moschata (Rifu)	cmowcgB072
ClCG09G015800	Cucurbita moschata (Rifu)	cmowcgB441
ClCG09G015800	Wild cucumber (PI 183967)	cpiwcgB541
ClCG09G015800	Cucumber (Chinese Long) v2	cuwcgB514
ClCG09G015800	Melon (DHL92) v3.5.1	mewcgB176
ClCG09G015800	Watermelon (97103) v1	wcgwmB009
ClCG09G015800	Cucurbita pepo (Zucchini)	cpewcgB218
ClCG09G015800	Cucurbita pepo (Zucchini)	cpewcgB578
ClCG09G015800	Bottle gourd (USVL1VR-Ls)	lsiwcgB215
ClCG09G015800	Cucumber (Gy14) v2	cgybwcgB473
ClCG09G015800	Melon (DHL92) v3.6.1	medwcgB171
ClCG09G015800	Silver-seed gourd	carwcgB0281
ClCG09G015800	Silver-seed gourd	carwcgB0363